Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra01G0008300 Salix brachista HOM05D000055 ORTHO05D349660 1.6e-208 729.2 368 100.0
Potri.003G215201 Populus trichocarpa HOM05D000055 ORTHO05D003892 4.7e-35 152.9 375 36.5
Sabra03G0160600 Salix brachista HOM05D000055 ORTHO05D003892 3.1e-26 123.6 368 31.0
Potri.001G010700 Populus trichocarpa HOM05D000055 ORTHO05D003892 5.3e-26 122.9 277 35.7
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 8.4e-16 89.0 251 30.7
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 4.2e-15 86.7 204 34.8
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 1.2e-14 85.1 214 31.8
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 2.3e-13 80.9 182 37.4
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 3.9e-13 80.1 184 32.6
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 3.9e-13 80.1 194 33.5
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.9e-12 77.8 191 31.9
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 9.6e-12 75.5 212 34.9
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 1.3e-11 75.1 189 32.8
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 1.3e-11 75.1 233 29.6
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 1.6e-11 74.7 190 32.1
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 2.1e-11 74.3 182 34.1
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 2.1e-11 74.3 200 32.0
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 2.8e-11 73.9 194 32.5
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 3.7e-11 73.6 191 33.0
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 4.8e-11 73.2 191 33.0
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 4.8e-11 73.2 192 34.4
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 4.8e-11 73.2 181 33.1
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 4.8e-11 73.2 185 31.9
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 4.8e-11 73.2 189 33.3
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 6.2e-11 72.8 185 33.0
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 6.2e-11 72.8 249 28.9
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 6.2e-11 72.8 191 32.5
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 6.2e-11 72.8 188 31.4
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 6.2e-11 72.8 191 33.0
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 8.2e-11 72.4 191 33.0
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 1.1e-10 72.0 191 31.9
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 1.1e-10 72.0 192 33.9
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 1.1e-10 72.0 191 33.5
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 1.1e-10 72.0 231 29.4
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 1.1e-10 72.0 193 33.2
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 1.1e-10 72.0 182 31.3
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.4e-10 71.6 191 32.5
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 1.4e-10 71.6 191 31.9
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 1.4e-10 71.6 259 30.9
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 1.4e-10 71.6 182 32.4
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 1.4e-10 71.6 192 32.8
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.8e-10 71.2 192 31.2
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 2.4e-10 70.9 191 30.9
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 2.4e-10 70.9 184 32.6
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 2.4e-10 70.9 227 29.1
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 2.4e-10 70.9 194 32.0
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 2.4e-10 70.9 191 30.9
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 3.1e-10 70.5 227 29.1
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 3.1e-10 70.5 193 32.6
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 3.1e-10 70.5 193 33.2
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 3.1e-10 70.5 191 31.9
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 3.1e-10 70.5 182 31.9
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 3.1e-10 70.5 189 32.8
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 4.0e-10 70.1 185 31.9
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 4.0e-10 70.1 191 33.0
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 4.0e-10 70.1 191 32.5
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 4.0e-10 70.1 180 31.7
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 5.3e-10 69.7 193 32.6
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 5.3e-10 69.7 250 28.0
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 5.3e-10 69.7 184 32.6
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 5.3e-10 69.7 185 30.8
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 5.3e-10 69.7 190 34.7
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 6.9e-10 69.3 182 32.4
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 6.9e-10 69.3 182 32.4
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 6.9e-10 69.3 182 32.4
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 6.9e-10 69.3 205 30.2
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 6.9e-10 69.3 191 31.9
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 9.0e-10 68.9 225 29.3
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 9.0e-10 68.9 194 30.9
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 9.0e-10 68.9 191 31.4
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 9.0e-10 68.9 191 33.0
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 9.0e-10 68.9 191 33.0
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 9.0e-10 68.9 191 33.0
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 9.0e-10 68.9 211 28.4
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.2e-09 68.6 183 32.8
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.2e-09 68.6 182 31.9
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.2e-09 68.6 179 30.7
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 1.2e-09 68.6 225 27.6
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 1.2e-09 68.6 225 27.6
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 1.5e-09 68.2 182 32.4
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 1.5e-09 68.2 182 32.4
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 1.5e-09 68.2 191 31.9
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.5e-09 68.2 194 31.4
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 1.5e-09 68.2 192 32.8
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 1.5e-09 68.2 184 32.1
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 2.0e-09 67.8 193 32.1
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 2.0e-09 67.8 193 31.6
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 2.0e-09 67.8 184 34.2
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 2.0e-09 67.8 194 31.4
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 2.6e-09 67.4 191 30.9
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 2.6e-09 67.4 199 30.7
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.6e-09 67.4 205 29.8
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 2.6e-09 67.4 184 31.5
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 3.4e-09 67.0 192 31.8
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 3.4e-09 67.0 193 32.1
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 3.4e-09 67.0 195 31.8
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 4.5e-09 66.6 191 31.4
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 4.5e-09 66.6 225 28.0
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 4.5e-09 66.6 195 31.8
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 4.5e-09 66.6 184 31.5
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 5.8e-09 66.2 191 31.4
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 5.8e-09 66.2 193 31.6
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 5.8e-09 66.2 193 31.6
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 7.6e-09 65.9 182 33.0
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 7.6e-09 65.9 191 32.5
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 7.6e-09 65.9 191 31.9
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 7.6e-09 65.9 194 30.9
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 1.0e-08 65.5 203 31.0
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 1.0e-08 65.5 191 31.9
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.0e-08 65.5 179 30.7
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 1.0e-08 65.5 185 30.8
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 1.3e-08 65.1 191 30.9
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.3e-08 65.1 179 30.7
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 1.3e-08 65.1 203 31.0
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.3e-08 65.1 191 29.8
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.3e-08 65.1 188 30.9
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 1.7e-08 64.7 182 31.9
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 1.7e-08 64.7 186 32.3
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 1.7e-08 64.7 195 31.8
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 2.2e-08 64.3 186 32.3
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 2.2e-08 64.3 186 32.3
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 2.2e-08 64.3 181 30.9
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 2.2e-08 64.3 181 30.9
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 2.2e-08 64.3 195 31.3
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 2.9e-08 63.9 184 31.5
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 2.9e-08 63.9 184 31.5
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 3.8e-08 63.5 186 32.3
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 3.8e-08 63.5 189 30.7
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 3.8e-08 63.5 192 31.2
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 3.8e-08 63.5 186 32.3
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 3.8e-08 63.5 206 28.6
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 4.9e-08 63.2 191 31.4
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 4.9e-08 63.2 200 30.5
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 4.9e-08 63.2 203 29.1
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 6.5e-08 62.8 224 27.7
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 6.5e-08 62.8 182 31.3
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 6.5e-08 62.8 229 29.7
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 6.5e-08 62.8 195 30.3
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 8.4e-08 62.4 227 28.6
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 1.1e-07 62.0 229 28.8
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 1.1e-07 62.0 191 30.4
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.4e-07 61.6 182 30.8
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 1.4e-07 61.6 227 28.2
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 1.4e-07 61.6 191 31.4
TAR633G1761 Trochodendron aralioides HOM05D000055 ORTHO05D003892 1.4e-07 61.6 37 73.0
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 1.9e-07 61.2 182 30.8
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 2.5e-07 60.8 192 30.2
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 2.5e-07 60.8 179 31.8
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 2.5e-07 60.8 191 30.9
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 3.2e-07 60.5 37 70.3
FAN25G0102 Fragaria x ananassa HOM05D000055 ORTHO05D003892 3.2e-07 60.5 37 70.3
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 5.5e-07 59.7 37 70.3
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 5.5e-07 59.7 225 27.6
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 9.3e-07 58.9 179 27.9
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 1.2e-06 58.5 201 28.9
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 1.6e-06 58.2 191 31.4
Oeu025527.2 Olea europaea HOM05D000055 ORTHO05D003892 1.6e-06 58.2 38 65.8
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 1.6e-06 58.2 191 30.9
Pp3c1_23490 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.6e-06 58.2 256 26.6
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 1.6e-06 58.2 191 30.4
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 2.1e-06 57.8 191 30.4
Duzib114G0286 Durio zibethinus HOM05D000055 ORTHO05D003892 2.1e-06 57.8 176 30.1
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 2.7e-06 57.4 187 27.3
AUR62009881 Chenopodium quinoa HOM05D000055 ORTHO05D003892 6.1e-06 56.2 181 29.8
HPP92_020313 Vanilla planifolia HOM05D010659 ORTHO05D003892 6.1e-06 56.2 37 64.9


User provided reference genes

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