Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.5e-209 731.9 373 100.0
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 7.4e-153 544.3 371 73.9
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.1e-145 520.4 361 73.4
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 9.7e-145 517.3 361 71.7
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.2e-144 516.2 361 71.7
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 2.8e-144 515.8 361 73.1
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.7e-144 515.4 361 72.6
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.7e-144 515.4 363 69.4
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.8e-144 515.0 361 72.0
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 6.3e-144 514.6 361 71.5
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 1.1e-143 513.8 361 71.5
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 1.8e-143 513.1 361 71.7
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.1e-143 512.3 361 72.0
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.1e-143 512.3 361 71.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.1e-143 511.9 361 71.7
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 4.1e-143 511.9 361 71.7
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 5.3e-143 511.5 361 72.3
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 5.3e-143 511.5 361 72.6
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 5.3e-143 511.5 361 72.3
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 5.3e-143 511.5 361 71.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 72.0
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 71.5
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 71.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 71.5
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 71.7
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 7.0e-143 511.1 361 71.7
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.2e-142 510.4 371 69.8
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-142 510.4 361 71.7
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 1.6e-142 510.0 361 71.7
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 1.6e-142 510.0 361 71.7
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.0e-142 509.6 365 71.5
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 2.0e-142 509.6 361 72.0
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 2.6e-142 509.2 361 71.2
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 2.6e-142 509.2 361 71.2
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.6e-142 509.2 361 71.7
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.6e-142 509.2 361 70.9
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 3.5e-142 508.8 361 71.5
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 4.5e-142 508.4 361 71.5
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 4.5e-142 508.4 361 71.2
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 4.5e-142 508.4 361 71.5
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 4.5e-142 508.4 361 71.5
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 4.5e-142 508.4 361 71.7
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 5.9e-142 508.1 363 70.8
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 5.9e-142 508.1 363 70.8
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 5.9e-142 508.1 361 72.0
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 5.9e-142 508.1 361 71.2
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.9e-142 508.1 361 71.5
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 5.9e-142 508.1 361 71.5
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 5.9e-142 508.1 361 71.2
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 7.7e-142 507.7 361 71.5
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 7.7e-142 507.7 361 70.9
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 7.7e-142 507.7 361 71.2
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.7e-142 507.7 361 72.3
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-141 507.3 371 70.4
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-141 506.9 361 72.0
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.3e-141 506.9 361 72.0
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.3e-141 506.9 371 70.4
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.7e-141 506.5 359 70.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 2.2e-141 506.1 361 71.5
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 2.2e-141 506.1 361 71.5
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 2.2e-141 506.1 361 71.7
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.2e-141 506.1 361 71.5
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.2e-141 506.1 358 72.3
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 2.2e-141 506.1 361 71.7
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 2.9e-141 505.8 361 70.9
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 2.9e-141 505.8 361 70.9
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 3.8e-141 505.4 361 71.2
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.8e-141 505.4 361 71.2
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 3.8e-141 505.4 362 70.4
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 5.0e-141 505.0 363 70.2
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 5.0e-141 505.0 361 71.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 5.0e-141 505.0 361 70.9
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 5.0e-141 505.0 361 70.6
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 6.5e-141 504.6 363 71.1
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 6.5e-141 504.6 361 71.2
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-140 503.8 361 71.2
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.1e-140 503.8 361 71.2
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.9e-140 503.1 361 70.1
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-140 503.1 361 71.5
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 1.9e-140 503.1 361 69.8
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.9e-140 503.1 361 71.2
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.9e-140 503.1 361 70.9
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 2.5e-140 502.7 404 64.9
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 3.2e-140 502.3 361 71.2
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 3.2e-140 502.3 361 70.9
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.2e-140 502.3 361 70.9
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 3.2e-140 502.3 361 70.9
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 3.2e-140 502.3 361 70.1
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.2e-140 502.3 358 70.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 4.2e-140 501.9 361 70.1
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 4.2e-140 501.9 361 70.6
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.5e-140 501.5 361 71.2
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 5.5e-140 501.5 361 70.9
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 5.5e-140 501.5 361 70.4
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 5.5e-140 501.5 361 71.2
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 7.2e-140 501.1 361 70.9
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 9.4e-140 500.7 361 70.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 9.4e-140 500.7 361 70.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-139 500.4 359 70.8
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.2e-139 500.4 359 70.8
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.2e-139 500.4 361 70.6
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 2.1e-139 499.6 361 69.8
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 2.1e-139 499.6 361 70.1
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.7e-139 499.2 361 70.4
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 3.6e-139 498.8 361 70.4
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 4.7e-139 498.4 361 70.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 4.7e-139 498.4 361 70.4
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 4.7e-139 498.4 361 70.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.0e-139 497.7 361 70.4
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.0e-138 497.3 361 70.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 2.3e-138 496.1 361 70.1
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 2.3e-138 496.1 361 69.8
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.0e-138 495.7 362 68.8
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.2e-137 493.8 361 70.1
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.2e-137 493.8 361 70.1
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 1.5e-137 493.4 361 70.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.7e-137 491.5 361 70.1
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.7e-137 491.5 403 65.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.7e-136 488.8 339 72.3
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 2.9e-133 479.2 361 68.1
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 6.5e-133 478.0 361 69.3
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.8e-130 469.9 372 65.9
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 1.4e-127 460.3 361 67.0
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 1.8e-127 459.9 435 57.7
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 2.4e-127 459.5 360 62.5
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 7.0e-127 458.0 361 66.8
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 1.0e-125 454.1 319 71.8
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.3e-125 453.0 362 63.3
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.5e-124 450.3 351 61.5
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 1.9e-124 449.9 360 61.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 5.5e-124 448.4 305 74.1
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.5e-124 448.4 357 61.3
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 3.0e-122 442.6 374 60.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 6.8e-122 441.4 359 59.9
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 9.8e-121 437.6 351 61.3
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 4.1e-119 432.2 361 64.0
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.7e-117 426.8 287 74.9
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.2e-115 420.6 299 71.9
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.1e-115 419.9 289 74.0
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 4.7e-115 418.7 356 57.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 2.0e-113 413.3 363 60.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 4.9e-112 408.7 360 55.3
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 3.5e-110 402.5 356 55.6
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 5.8e-105 385.2 317 64.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 1.4e-82 310.8 298 55.7
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 2.0e-81 307.0 356 48.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.7e-78 296.6 341 47.2
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 3.1e-74 283.1 217 65.9
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 5.8e-57 225.7 186 65.6
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.3e-53 214.5 159 67.3
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 2.6e-49 200.3 136 77.2
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 5.9e-49 199.1 188 54.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 5.5e-39 166.0 118 67.8
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 8.5e-32 142.1 211 39.8
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.9e-31 141.0 110 70.0
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 6.7e-29 132.5 119 54.6
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 5.7e-28 129.4 83 77.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.9e-25 119.4 78 67.9
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.7e-22 110.5 68 76.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 7.7e-17 92.4 76 61.8
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 2.9e-16 90.5 76 60.5
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.7e-14 84.0 86 51.2
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 2.3e-13 80.9 51 74.5


User provided reference genes

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