Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.6e-52 208.4 100 100.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 8.1e-38 160.2 100 71.0
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 2.4e-37 158.7 98 70.4
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 5.2e-37 157.5 100 70.0
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 8.9e-37 156.8 100 69.0
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 8.9e-37 156.8 100 69.0
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 1.2e-36 156.4 100 69.0
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 2.0e-36 155.6 100 69.0
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 2.0e-36 155.6 100 69.0
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 2.6e-36 155.2 100 67.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.4e-36 154.8 100 69.0
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.4e-36 154.8 100 67.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 4.4e-36 154.5 100 67.0
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 4.4e-36 154.5 100 67.0
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 7.6e-36 153.7 100 65.0
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 9.9e-36 153.3 100 67.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 9.9e-36 153.3 100 68.0
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 9.9e-36 153.3 100 67.0
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 1.3e-35 152.9 100 66.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 1.3e-35 152.9 100 66.0
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.3e-35 152.9 100 66.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.7e-35 152.5 100 65.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.7e-35 152.5 100 67.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.7e-35 152.5 100 65.0
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 1.7e-35 152.5 100 68.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 2.2e-35 152.1 98 66.3
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.2e-35 152.1 100 66.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 2.2e-35 152.1 100 67.0
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.2e-35 152.1 100 66.0
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 2.9e-35 151.8 100 64.0
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.9e-35 151.8 100 64.0
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 2.9e-35 151.8 100 66.0
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.9e-35 151.8 100 66.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 2.9e-35 151.8 100 65.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.9e-35 151.8 100 65.0
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 3.8e-35 151.4 100 63.0
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 3.8e-35 151.4 100 66.0
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 4.9e-35 151.0 100 63.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 4.9e-35 151.0 100 65.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 6.4e-35 150.6 100 66.0
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 6.4e-35 150.6 100 66.0
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 8.4e-35 150.2 100 64.0
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 8.4e-35 150.2 100 64.0
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 68.0
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 65.0
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 65.0
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 64.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 66.0
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 1.1e-34 149.8 100 66.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 1.4e-34 149.4 100 62.0
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.9e-34 149.1 100 63.0
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-34 149.1 100 62.0
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.9e-34 149.1 100 62.0
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.9e-34 149.1 100 62.0
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.9e-34 149.1 100 62.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.9e-34 149.1 100 65.0
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.9e-34 149.1 100 65.0
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.9e-34 149.1 100 65.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 2.4e-34 148.7 100 63.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 2.4e-34 148.7 100 64.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 2.4e-34 148.7 100 65.0
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 3.2e-34 148.3 100 61.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 4.2e-34 147.9 100 64.0
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 5.4e-34 147.5 100 63.0
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 5.4e-34 147.5 100 63.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 5.4e-34 147.5 99 64.6
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 7.1e-34 147.1 100 67.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 9.2e-34 146.7 100 64.0
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 9.2e-34 146.7 100 62.0
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.2e-33 146.4 100 62.0
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.6e-33 146.0 100 64.0
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.6e-33 146.0 100 61.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 1.6e-33 146.0 100 63.0
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.6e-33 146.0 100 63.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.6e-33 146.0 100 63.0
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 2.1e-33 145.6 100 62.0
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 2.1e-33 145.6 98 67.3
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 2.1e-33 145.6 100 66.0
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.7e-33 145.2 100 64.0
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 3.5e-33 144.8 100 59.0
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 3.5e-33 144.8 100 64.0
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 4.6e-33 144.4 98 63.3
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 6.0e-33 144.1 100 61.0
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 6.0e-33 144.1 100 64.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 6.0e-33 144.1 109 59.6
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 6.0e-33 144.1 100 61.0
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 1.0e-32 143.3 98 65.3
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 1.3e-32 142.9 100 63.0
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 1.3e-32 142.9 97 63.9
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 2.3e-32 142.1 111 59.5
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 3.9e-32 141.4 91 67.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 5.1e-32 141.0 98 61.2
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 5.1e-32 141.0 104 63.5
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 6.6e-32 140.6 98 62.2
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 6.6e-32 140.6 98 62.2
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.1e-31 139.8 98 62.2
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 2.5e-31 138.7 91 65.9
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 4.3e-31 137.9 91 65.9
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.3e-30 136.3 100 58.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 3.6e-30 134.8 91 63.7
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 5.3e-29 131.0 93 60.2
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 5.3e-29 131.0 98 52.0
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 3.8e-27 124.8 100 53.0
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 5.4e-26 120.9 98 50.0
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.3e-24 116.3 69 72.5
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 3.9e-24 114.8 73 69.9
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.1e-24 114.4 73 67.1
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 1.5e-23 112.8 73 69.9
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 1.6e-22 109.4 72 66.7
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 2.1e-22 109.0 72 63.9
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.8e-22 108.6 74 63.5
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 8.1e-22 107.1 80 57.5
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 3.1e-21 105.1 70 65.7
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 3.1e-21 105.1 97 48.5
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 4.0e-21 104.8 70 64.3
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.6e-20 102.1 71 62.0
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 5.8e-20 100.9 73 58.9
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 4.9e-19 97.8 69 59.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 4.3e-15 84.7 104 44.2
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 1.4e-13 79.7 63 57.1
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 2.6e-12 75.5 63 57.1
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 7.1e-10 67.4 54 51.9
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 2.1e-06 55.8 43 55.8


User provided reference genes

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