Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1068 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 7.0e-302 1040.0 602 100.0
SMO230G0121 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 9.3e-214 747.3 650 74.5
SMO230G0058 Selaginella moellendorffii HOM05D005355 ORTHO05D006591 2.2e-77 294.3 292 62.3
Medtr3g072480 Medicago truncatula HOM05D005355 ORTHO05D006591 1.2e-27 129.0 428 31.8
HanXRQChr04g0109451 Helianthus annuus HOM05D005355 ORTHO05D006591 2.0e-27 128.3 378 30.7
Cpa.g.sc36.50 Carica papaya HOM05D005355 ORTHO05D006591 2.7e-27 127.9 382 31.2
Phvul.009G124200 Phaseolus vulgaris HOM05D005355 ORTHO05D006591 2.7e-27 127.9 416 29.3
VMungo1309G2754 Vigna mungo HOM05D005355 ORTHO05D006591 3.5e-27 127.5 395 30.1
Ciclev10000938m.g Citrus clementina HOM05D005355 ORTHO05D006591 1.3e-26 125.6 421 29.2
Cc00_g04310 Coffea canephora HOM05D005355 ORTHO05D006591 5.0e-26 123.6 420 27.4
Duzib093G2154 Durio zibethinus HOM05D005355 ORTHO05D006591 2.5e-25 121.3 420 30.0
Hund27026 Selenicereus undatus HOM05D005355 ORTHO05D006591 5.6e-25 120.2 405 28.6
Thhalv10029139m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 9.5e-25 119.4 397 28.7
TWI12G0790 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 9.5e-25 119.4 402 29.9
Glyma.04G250500 Glycine max HOM05D005355 ORTHO05D006591 2.1e-24 118.2 401 30.9
Lj1g0013612 Lotus japonicus HOM05D005355 ORTHO05D006591 3.6e-24 117.5 419 31.0
CANSAT25G1794 Cannabis sativa HOM05D005355 ORTHO05D006591 4.7e-24 117.1 416 29.8
Sc01g0001210 Simmondsia chinensis HOM05D005355 ORTHO05D006591 4.7e-24 117.1 405 28.6
GSVIVG01008886001 Vitis vinifera HOM05D005355 ORTHO05D006591 4.7e-24 117.1 429 28.9
MSTRG.326 Avicennia marina HOM05D005355 ORTHO05D006591 6.2e-24 116.7 408 28.4
Nn5g28219 Nelumbo nucifera HOM05D005355 ORTHO05D006591 8.1e-24 116.3 432 29.2
Potri.002G085000 Populus trichocarpa HOM05D005355 ORTHO05D006591 8.1e-24 116.3 427 30.4
CiPaw.05G223300 Carya illinoinensis HOM05D005355 ORTHO05D006591 1.1e-23 115.9 414 29.0
Ca_15194_v3 Cicer arietinum L. HOM05D005355 ORTHO05D006591 1.1e-23 115.9 417 29.7
ATR0104G007 Amborella trichopoda HOM05D005355 ORTHO05D006591 2.3e-23 114.8 407 28.3
Gohir.A05G234400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 4.0e-23 114.0 447 34.2
CAN.G127.21 Capsicum annuum HOM05D005355 ORTHO05D006591 1.2e-22 112.5 419 28.6
CsaV3_2G014020 Cucumis sativus L. HOM05D005355 ORTHO05D006591 1.2e-22 112.5 438 27.4
Manes.18G076200 Manihot esculenta HOM05D005355 ORTHO05D006591 2.0e-22 111.7 406 29.6
AUR62019052 Chenopodium quinoa HOM05D005355 ORTHO05D006591 3.4e-22 110.9 421 31.1
PSO170G1761 Papaver somniferum HOM05D005355 ORTHO05D006591 4.4e-22 110.5 423 27.2
C06p00770 Brassica napus HOM05D005355 ORTHO05D006591 5.8e-22 110.2 364 30.5
Lj4A622G14 Lonicera japonica HOM05D005355 ORTHO05D006591 5.8e-22 110.2 420 31.7
Os11g0544600 Oryza sativa ssp. japonica HOM05D005355 ORTHO05D006591 5.8e-22 110.2 412 28.9
Glyma.06G112300 Glycine max HOM05D005355 ORTHO05D006591 7.5e-22 109.8 412 29.9
TAR625G0673 Trochodendron aralioides HOM05D005355 ORTHO05D006591 7.5e-22 109.8 398 32.2
BolC6t35219H Brassica oleracea HOM05D005355 ORTHO05D006591 9.9e-22 109.4 366 30.3
Psat5g132440 Pisum sativum HOM05D005355 ORTHO05D006591 9.9e-22 109.4 445 30.8
TPR.G24014 Trifolium pratense HOM05D005355 ORTHO05D006591 9.9e-22 109.4 422 29.9
EL10Ac1g01045 Beta vulgaris HOM05D005355 ORTHO05D006591 1.7e-21 108.6 402 32.6
Cfa016002 Carpinus fangiana HOM05D005355 ORTHO05D006591 2.2e-21 108.2 385 29.4
ECA238G0419 Erigeron canadensis HOM05D005355 ORTHO05D006591 2.2e-21 108.2 392 28.3
MBI06_g20714_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.2e-21 108.2 417 27.1
Sp1g33640 Schrenkiella parvula HOM05D005355 ORTHO05D006591 2.2e-21 108.2 394 29.9
Prupe.1G500200 Prunus persica HOM05D005355 ORTHO05D006591 2.9e-21 107.8 424 30.0
PGR044G2411 Punica granatum HOM05D005355 ORTHO05D006591 2.9e-21 107.8 410 28.3
QL09p035410 Quercus lobata HOM05D005355 ORTHO05D006591 2.9e-21 107.8 413 32.4
CiPaw.06G029200 Carya illinoinensis HOM05D005355 ORTHO05D006591 3.7e-21 107.5 466 27.9
FAN27G0453 Fragaria x ananassa HOM05D005355 ORTHO05D006591 3.7e-21 107.5 434 28.1
Oeu062052.1 Olea europaea HOM05D005355 ORTHO05D006591 3.7e-21 107.5 405 27.9
BcaB07g33934 Brassica carinata HOM05D005355 ORTHO05D006591 4.9e-21 107.1 412 30.3
Gorai.010G049600 Gossypium raimondii HOM05D005355 ORTHO05D006591 4.9e-21 107.1 430 29.8
PSO528G0270 Papaver somniferum HOM05D005355 ORTHO05D006591 8.3e-21 106.3 423 26.7
Zm00001eb113700 Zea mays HOM05D005355 ORTHO05D006591 8.3e-21 106.3 414 30.0
AagrBONN_evm.TU.Sc2ySwM_362.1810 Anthoceros agrestis HOM05D005355 ORTHO05D006591 1.1e-20 105.9 412 34.0
CSS0023513 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 1.1e-20 105.9 430 29.5
MD15G1351600 Malus domestica HOM05D005355 ORTHO05D006591 1.1e-20 105.9 463 30.5
Gohir.A06G043600 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.9e-20 105.1 432 29.2
Gohir.D05G236700 Gossypium hirsutum HOM05D005355 ORTHO05D006591 1.9e-20 105.1 438 31.1
CSS0006134 Camellia sinensis var. sinensis HOM05D005355 ORTHO05D006591 2.4e-20 104.8 429 31.7
MELO3C010600.2 Cucumis melo HOM05D005355 ORTHO05D006591 2.4e-20 104.8 275 34.5
SGA_v2.0_scaffold122G33176 Striga asiatica HOM05D005355 ORTHO05D006591 2.4e-20 104.8 400 29.0
AL1G52440 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 5.4e-20 103.6 470 26.2
COL.COLO4_35946 Corchorus olitorius HOM05D005355 ORTHO05D006591 1.2e-19 102.4 369 30.9
Thhalv10011453m.g Eutrema salsugineum HOM05D005355 ORTHO05D006591 1.2e-19 102.4 390 28.5
Gorai.009G245100 Gossypium raimondii HOM05D005355 ORTHO05D006591 1.2e-19 102.4 439 31.7
TWI56G0611 Tripterygium wilfordii HOM05D005355 ORTHO05D006591 1.2e-19 102.4 426 30.0
arahy.Tifrunner.gnm1.ann1.SCI4MN Arachis hypogaea HOM05D005355 ORTHO05D006591 1.6e-19 102.1 285 41.4
Gohir.D06G044400 Gossypium hirsutum HOM05D005355 ORTHO05D006591 2.1e-19 101.7 430 30.0
Sabra02G0066400 Salix brachista HOM05D005355 ORTHO05D006591 2.1e-19 101.7 447 28.0
THA.LOC104817273 Tarenaya hassleriana HOM05D005355 ORTHO05D006591 2.1e-19 101.7 433 33.5
Eucgr.F04357 Eucalyptus grandis HOM05D005355 ORTHO05D006591 2.7e-19 101.3 415 28.7
CARHR036040 Cardamine hirsuta HOM05D005355 ORTHO05D006591 3.5e-19 100.9 384 36.2
Aqoxy6G00187 Aquilegia oxysepala HOM05D005355 ORTHO05D006591 6.0e-19 100.1 411 28.5
Haze_00460 Corylus avellana HOM05D005355 ORTHO05D006591 6.0e-19 100.1 300 32.0
BraSC36t46079Z Brassica rapa HOM05D005355 ORTHO05D006591 7.8e-19 99.8 406 28.8
FAN20G1264 Fragaria x ananassa HOM05D005355 ORTHO05D006591 7.8e-19 99.8 418 28.9
Lsat_1_v5_gn_5_101461 Lactuca sativa HOM05D005355 ORTHO05D006591 1.0e-18 99.4 391 29.7
MBI15_g24178_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 1.3e-18 99.0 369 33.6
Sp6g09690 Schrenkiella parvula HOM05D005355 ORTHO05D006591 1.3e-18 99.0 406 35.7
Thecc.08G123400 Theobroma cacao HOM05D005355 ORTHO05D006591 1.7e-18 98.6 423 27.7
AT1G44780 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 2.3e-18 98.2 380 28.7
CDE06G1640 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.3e-18 98.2 386 27.5
MBI15_g20159_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 2.3e-18 98.2 376 30.1
BcaC08g42867 Brassica carinata HOM05D005355 ORTHO05D006591 3.0e-18 97.8 406 29.1
A10p07350 Brassica napus HOM05D005355 ORTHO05D006591 3.0e-18 97.8 406 28.6
FvH4_2g26711 Fragaria vesca HOM05D005355 ORTHO05D006591 3.0e-18 97.8 417 28.8
Duzib116G0422 Durio zibethinus HOM05D005355 ORTHO05D006591 5.1e-18 97.1 426 28.6
ClCG08G005570 Citrullus lanatus HOM05D005355 ORTHO05D006591 6.6e-18 96.7 274 32.8
arahy.Tifrunner.gnm1.ann1.Y2U2DK Arachis hypogaea HOM05D005355 ORTHO05D006591 8.6e-18 96.3 288 40.6
Migut.F01876 Erythranthe guttata HOM05D005355 ORTHO05D006591 1.5e-17 95.5 425 28.9
FAN24G2565 Fragaria x ananassa HOM05D005355 ORTHO05D006591 1.9e-17 95.1 434 27.2
Sopen11g007660 Solanum pennellii HOM05D005355 ORTHO05D006591 2.5e-17 94.7 401 25.7
MD00G1157400 Malus domestica HOM05D005355 ORTHO05D006591 4.3e-17 94.0 444 31.5
Solyc11g012920.3 Solanum lycopersicum HOM05D005355 ORTHO05D006591 5.6e-17 93.6 397 25.4
DCAR_011614 Daucus carota HOM05D005355 ORTHO05D006591 7.3e-17 93.2 295 30.2
Lalb_Chr08g0241491 Lupinus albus HOM05D005355 ORTHO05D006591 7.3e-17 93.2 421 34.2
Nitab4.5_0001803g0130 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.5e-17 92.8 352 29.8
unitig_52.g17510 Utricularia gibba HOM05D005355 ORTHO05D006467 1.6e-16 92.0 441 25.6
Sabra05G0133000 Salix brachista HOM05D005355 ORTHO05D006591 2.1e-16 91.7 264 37.9
RcHm_v2.0_Chr6g0295601 Rosa chinensis HOM05D005355 ORTHO05D006591 4.7e-16 90.5 265 32.1
Atru.chr13.1433 Acer truncatum HOM05D005355 ORTHO05D006591 6.2e-16 90.1 237 33.3
Aa31LG9G14260 Aethionema arabicum HOM05D005355 ORTHO05D006591 6.2e-16 90.1 428 32.7
Sed0010827 Sechium edule HOM05D005355 ORTHO05D006591 1.1e-15 89.4 277 35.7
Potri.005G176400 Populus trichocarpa HOM05D005355 ORTHO05D006591 1.4e-15 89.0 264 40.2
RhsimUnG0093800 Rhododendron simsii HOM05D005355 ORTHO05D006591 4.0e-15 87.4 439 28.5
FAN15G2971 Fragaria x ananassa HOM05D005355 ORTHO05D006591 5.2e-15 87.0 442 27.1
AT4G08310 Arabidopsis thaliana HOM05D005355 ORTHO05D006591 1.5e-14 85.5 404 33.4
SHI29459 Sapria himalayana HOM05D005355 ORTHO05D006591 2.6e-14 84.7 381 27.3
Carub.0006s2687 Capsella rubella HOM05D005355 ORTHO05D006591 9.9e-14 82.8 405 33.6
AL6G42080 Arabidopsis lyrata HOM05D005355 ORTHO05D006591 1.3e-13 82.4 425 31.3
Dinv27329 Davidia involucrata HOM05D005355 ORTHO05D006591 3.8e-13 80.9 429 26.1
CDE06G0823 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 4.9e-13 80.5 83 56.6
Mapoly0004s0202 Marchantia polymorpha HOM05D005355 ORTHO05D006591 1.1e-12 79.3 498 28.3
SMO164G0216 Selaginella moellendorffii HOM05D000001 ORTHO05D000003 1.2e-11 75.9 139 41.7
CARHR259390 Cardamine hirsuta HOM05D005355 ORTHO05D006591 2.1e-11 75.1 431 26.2
MBI15_g20157_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D010248 1.0e-10 72.8 271 31.7
MBI15_g19197_MAGBIO Magnolia biondii HOM05D005355 ORTHO05D006591 5.1e-10 70.5 73 56.2
Nitab4.5_0001273g0020 Nicotiana tabacum HOM05D005355 ORTHO05D006591 2.1e-08 65.1 72 52.8
SMO367G0959 Selaginella moellendorffii HOM05D000001 ORTHO05D375041 2.4e-07 61.6 71 53.5
HPP92_011157 Vanilla planifolia HOM05D005355 ORTHO05D006591 6.9e-07 60.1 176 27.8
CDE06G1231 Ceratophyllum demersum HOM05D005355 ORTHO05D006591 2.6e-06 58.2 201 25.9
AUR62027892 Chenopodium quinoa HOM05D005355 ORTHO05D006591 2.6e-06 58.2 268 35.8
arahy.Tifrunner.gnm1.ann1.V8LFJN Arachis hypogaea HOM05D005355 ORTHO05D006591 3.4e-06 57.8 284 24.3
Nitab4.5_0001273g0010 Nicotiana tabacum HOM05D005355 ORTHO05D006591 7.6e-06 56.6 85 40.0
Nitab4.5_0001803g0110 Nicotiana tabacum HOM05D005355 ORTHO05D006591 9.9e-06 56.2 73 42.5


User provided reference genes

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