Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.7e-238 828.9 416 100.0
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 9.5e-125 451.1 372 58.3
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 3.6e-124 449.1 375 58.1
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 5.2e-123 445.3 379 55.9
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.5e-122 443.7 379 55.9
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 2.0e-122 443.4 390 55.4
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.2e-121 439.9 377 56.0
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 3.8e-121 439.1 371 55.8
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 6.4e-121 438.3 369 56.4
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 6.4e-121 438.3 379 55.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 1.4e-120 437.2 369 55.3
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.9e-120 436.8 377 56.0
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 5.4e-120 435.3 377 55.4
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 7.1e-120 434.9 377 56.0
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 9.2e-120 434.5 377 56.2
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.2e-119 434.1 369 57.2
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.6e-119 433.7 369 55.3
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 2.7e-119 433.0 377 55.4
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.7e-119 433.0 372 57.5
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 7.8e-119 431.4 373 55.2
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 7.8e-119 431.4 374 55.3
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 7.8e-119 431.4 376 55.1
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.0e-118 431.0 369 55.8
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.3e-118 429.9 369 55.8
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 2.3e-118 429.9 369 55.8
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 3.0e-118 429.5 368 55.4
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 3.0e-118 429.5 399 53.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 3.9e-118 429.1 377 55.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.9e-118 429.1 377 54.9
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 6.6e-118 428.3 377 54.1
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.1e-117 427.6 367 55.6
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-117 427.6 367 55.6
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.5e-117 427.2 369 55.8
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 1.9e-117 426.8 384 53.6
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 1.9e-117 426.8 375 54.9
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 3.3e-117 426.0 377 55.4
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 4.3e-117 425.6 377 54.1
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.3e-117 425.6 367 55.3
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 9.6e-117 424.5 369 55.0
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 9.6e-117 424.5 369 56.1
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 2.8e-116 422.9 369 54.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 2.8e-116 422.9 395 53.4
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.8e-116 422.9 369 55.0
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 3.6e-116 422.5 377 55.2
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.6e-116 422.5 377 53.6
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 6.2e-116 421.8 369 55.3
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 6.2e-116 421.8 369 55.6
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 6.2e-116 421.8 387 54.5
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.2e-116 421.8 369 57.2
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 8.1e-116 421.4 410 51.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 1.8e-115 420.2 369 55.3
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 2.4e-115 419.9 369 53.9
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 2.4e-115 419.9 369 55.0
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.4e-115 419.9 369 55.0
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.1e-115 419.5 369 55.3
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.0e-115 419.1 369 54.2
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 4.0e-115 419.1 369 54.7
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 4.0e-115 419.1 369 54.7
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 6.9e-115 418.3 367 54.2
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 6.9e-115 418.3 373 53.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 8.9e-115 417.9 369 54.5
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.2e-114 417.5 369 53.9
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 1.2e-114 417.5 373 53.9
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.5e-114 417.2 369 55.0
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.0e-114 416.8 369 54.5
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.6e-114 416.4 354 56.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.4e-114 416.0 398 51.5
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 4.4e-114 415.6 377 53.6
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 7.6e-114 414.8 377 52.8
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 7.6e-114 414.8 373 53.6
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 1.7e-113 413.7 370 54.3
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 2.9e-113 412.9 370 54.9
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 2.9e-113 412.9 373 53.4
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 3.8e-113 412.5 374 53.5
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 4.9e-113 412.1 370 53.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 6.4e-113 411.8 399 51.6
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 1.1e-112 411.0 371 53.6
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 3.2e-112 409.5 422 49.5
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 4.2e-112 409.1 407 51.4
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 9.3e-112 407.9 369 52.8
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.2e-111 407.5 369 54.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.2e-111 407.5 369 54.5
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 4.6e-111 405.6 369 54.2
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 4.6e-111 405.6 369 54.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 7.8e-111 404.8 383 53.0
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 5.1e-110 402.1 370 52.2
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.9e-109 400.2 370 52.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 9.6e-109 397.9 344 54.9
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-107 394.4 377 51.2
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.4e-107 394.0 371 53.4
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.4e-107 393.3 344 54.4
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 6.4e-105 385.2 359 54.9
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 4.2e-104 382.5 326 57.4
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 4.6e-103 379.0 376 50.0
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.1e-101 374.4 392 46.4
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 8.1e-100 368.2 372 48.9
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 5.3e-99 365.5 371 50.1
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 1.3e-97 360.9 524 39.9
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.2e-97 360.1 323 52.9
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.9e-96 357.1 402 46.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 1.6e-95 354.0 320 53.8
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 4.6e-95 352.4 337 52.2
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 6.0e-95 352.1 310 56.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.8e-92 343.2 334 52.4
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 3.7e-92 342.8 295 56.3
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.9e-89 333.2 394 45.9
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 3.2e-88 329.7 299 55.2
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 5.7e-85 318.9 369 44.2
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 9.6e-85 318.2 308 52.9
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 8.5e-81 305.1 311 50.2
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 5.5e-80 302.4 382 45.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.8e-78 297.4 258 54.3
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 6.9e-75 285.4 227 62.1
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 2.9e-73 280.0 320 46.6
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 2.5e-72 276.9 276 51.8
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 3.0e-70 270.0 376 36.4
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.7e-49 201.1 252 44.0
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 3.7e-44 183.3 226 45.1
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-39 168.3 167 53.9
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.7e-36 157.9 144 52.1
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.7e-36 156.8 148 50.7
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 1.4e-35 154.8 149 49.0
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 1.2e-34 151.8 293 31.7
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.1e-31 139.4 419 31.3
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 3.9e-25 120.2 140 42.9
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 6.6e-25 119.4 108 50.9
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.6e-24 116.3 101 52.5
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.6e-24 116.3 96 60.4
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.9e-20 104.0 106 50.0
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.9e-17 93.6 62 72.6
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.8e-14 84.7 129 37.2
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.7e-12 78.2 88 46.6
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.2e-11 73.9 76 46.1
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 1.2e-10 72.0 61 52.5
CBR_g38907 Chara braunii HOM05D021006 ORTHO05D024937 1.3e-09 68.6 260 27.7
CBR_g38908 Chara braunii HOM05D021006 ORTHO05D024937 3.9e-09 67.0 260 27.3
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.1e-08 65.5 67 44.8
CBR_g38900 Chara braunii HOM05D021006 ORTHO05D024937 4.7e-07 60.1 144 27.8
CBR_g38904 Chara braunii HOM05D021006 ORTHO05D024937 1.4e-06 58.5 144 27.1


User provided reference genes

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