Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G1012 Selaginella moellendorffii HOM05D000322 ORTHO05D000114 6.0e-77 290.8 151 100.0
SMO367G0596 Selaginella moellendorffii HOM05D000322 ORTHO05D000114 9.3e-70 266.9 151 89.4
SMO114G0135 Selaginella moellendorffii HOM05D000197 ORTHO05D000114 1.4e-30 136.7 149 45.0
SMO337G0049 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 4.8e-18 95.1 150 37.3
SEGI_13418 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 2.1e-13 79.7 154 33.1
SEGI_23096 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 3.6e-13 79.0 152 32.9
ATR0693G208 Amborella trichopoda HOM05D000322 ORTHO05D000186 1.0e-12 77.4 153 33.3
Ah.03g132470 Amaranthus hybridus HOM05D000197 ORTHO05D000114 2.3e-12 76.3 138 37.7
HPP92_006905 Vanilla planifolia HOM05D000322 ORTHO05D000186 3.0e-12 75.9 153 33.3
SEGI_04347 Sequoiadendron giganteum HOM05D000197 ORTHO05D000114 4.0e-12 75.5 143 35.0
Mapoly0131s0013 Marchantia polymorpha HOM05D008409 ORTHO05D010483 8.8e-12 74.3 142 35.9
TWI09G0198 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 8.8e-12 74.3 154 30.5
HPP92_025196 Vanilla planifolia HOM05D000322 ORTHO05D000186 8.8e-12 74.3 148 31.8
SEGI_04706 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.2e-11 73.9 152 32.2
Peaxi162Scf00421g00328 Petunia axillaris HOM05D000197 ORTHO05D000114 1.5e-11 73.6 141 33.3
HPP92_010019 Vanilla planifolia HOM05D000197 ORTHO05D000114 1.5e-11 73.6 141 36.2
MSTRG.611 Avicennia marina HOM05D000197 ORTHO05D000114 2.6e-11 72.8 147 32.0
Mapoly0040s0030 Marchantia polymorpha HOM05D000322 ORTHO05D000186 2.6e-11 72.8 148 33.8
SMO141G0029 Selaginella moellendorffii HOM05D000322 ORTHO05D000186 2.6e-11 72.8 148 31.8
AUR62013976 Chenopodium quinoa HOM05D000197 ORTHO05D000114 3.3e-11 72.4 133 36.8
Nn8g41278 Nelumbo nucifera HOM05D000322 ORTHO05D000186 5.7e-11 71.6 153 27.5
TWI53G1556 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 5.7e-11 71.6 156 28.8
TAR622G0730 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.7e-11 71.6 144 34.7
HPP92_015289 Vanilla planifolia HOM05D000197 ORTHO05D000114 5.7e-11 71.6 141 35.5
EL10Ac6g13631 Beta vulgaris HOM05D000197 ORTHO05D000114 7.5e-11 71.2 135 37.8
Eucgr.H03981 Eucalyptus grandis HOM05D000322 ORTHO05D000186 7.5e-11 71.2 153 35.3
AUR62005328 Chenopodium quinoa HOM05D000197 ORTHO05D000114 9.7e-11 70.9 133 36.1
Nitab4.5_0001474g0070 Nicotiana tabacum HOM05D000197 ORTHO05D000114 9.7e-11 70.9 148 33.1
Potri.004G032900 Populus trichocarpa HOM05D000322 ORTHO05D000186 9.7e-11 70.9 154 27.3
SEGI_22247 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 9.7e-11 70.9 153 29.4
vmacro16271 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 9.7e-11 70.9 143 32.9
Potri.004G033000 Populus trichocarpa HOM05D000322 ORTHO05D000186 1.3e-10 70.5 154 27.3
Potri.010G000600 Populus trichocarpa HOM05D000322 ORTHO05D000186 1.3e-10 70.5 154 33.8
Zm00001eb410040 Zea mays HOM05D021418 ORTHO05D000186 1.3e-10 70.5 154 30.5
Dinv24891 Davidia involucrata HOM05D000197 ORTHO05D000114 1.7e-10 70.1 143 35.0
MBI03_g42550_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.7e-10 70.1 153 32.7
SEGI_16799 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.7e-10 70.1 154 29.9
Sabra15G0087800 Salix brachista HOM05D000322 ORTHO05D000186 2.2e-10 69.7 154 27.9
vmacro16272 Vaccinium macrocarpon HOM05D000197 ORTHO05D000114 2.2e-10 69.7 145 33.8
HPP92_025195 Vanilla planifolia HOM05D000322 ORTHO05D000186 2.8e-10 69.3 130 33.1
ECA246G2358 Erigeron canadensis HOM05D000197 ORTHO05D000114 8.2e-10 67.8 144 34.7
Sopen05g001890 Solanum pennellii HOM05D000197 ORTHO05D000114 8.2e-10 67.8 144 35.4
Lsat_1_v5_gn_5_100681 Lactuca sativa HOM05D000197 ORTHO05D000114 1.1e-09 67.4 141 35.5
MBI18_g04567_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 1.1e-09 67.4 155 28.4
SEGI_23828 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.1e-09 67.4 147 32.7
SEGI_23044 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.4e-09 67.0 153 30.1
Solyc05g005865.1 Solanum lycopersicum HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 35.4
PGSC0003DMG400004131 Solanum tuberosum HOM05D000197 ORTHO05D000114 1.4e-09 67.0 144 33.3
Hund05969 Selenicereus undatus HOM05D000197 ORTHO05D000114 1.8e-09 66.6 148 32.4
HanXRQChr11g0351041 Helianthus annuus HOM05D000197 ORTHO05D000114 2.4e-09 66.2 144 35.4
MBI06_g35209_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 2.4e-09 66.2 154 30.5
Os12g0555500 Oryza sativa ssp. japonica HOM05D021418 ORTHO05D000186 2.4e-09 66.2 152 32.2
Mapoly0151s0036 Marchantia polymorpha HOM05D000322 ORTHO05D000186 3.1e-09 65.9 144 27.1
CAN.G205.30 Capsicum annuum HOM05D000197 ORTHO05D000114 4.1e-09 65.5 141 32.6
Ciclev10006674m.g Citrus clementina HOM05D000322 ORTHO05D000186 4.1e-09 65.5 153 28.1
HanXRQChr17g0563811 Helianthus annuus HOM05D000197 ORTHO05D000114 5.3e-09 65.1 144 36.1
MBI03_g42551_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.3e-09 65.1 153 32.0
PGR004G1906 Punica granatum HOM05D000322 ORTHO05D000186 5.3e-09 65.1 153 33.3
SMO332G0032 Selaginella moellendorffii HOM05D008409 ORTHO05D000186 5.3e-09 65.1 136 33.1
Os03g0300400 Oryza sativa ssp. japonica HOM05D000322 ORTHO05D000186 7.0e-09 64.7 146 33.6
SEGI_21487 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 7.0e-09 64.7 136 30.9
HPP92_011864 Vanilla planifolia HOM05D000322 ORTHO05D000186 7.0e-09 64.7 155 27.7
CDE12G0840 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 9.1e-09 64.3 153 27.5
Lsat_1_v5_gn_3_48941 Lactuca sativa HOM05D000197 ORTHO05D000114 9.1e-09 64.3 144 34.0
TAR374G0922 Trochodendron aralioides HOM05D000197 ORTHO05D000114 1.2e-08 63.9 148 31.8
Ca_22763_v3 Cicer arietinum L. HOM05D000197 ORTHO05D000114 1.6e-08 63.5 146 34.9
Lj3A826T84 Lonicera japonica HOM05D000322 ORTHO05D000186 1.6e-08 63.5 153 32.0
QL06p010956 Quercus lobata HOM05D000322 ORTHO05D000186 1.6e-08 63.5 149 30.9
Sabra10G0068600 Salix brachista HOM05D000197 ORTHO05D000114 1.6e-08 63.5 134 37.3
CDE01G0674 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 2.0e-08 63.2 155 29.0
Aqoxy4G00952 Aquilegia oxysepala HOM05D000322 ORTHO05D000186 2.7e-08 62.8 153 31.4
CDE12G0035 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 2.7e-08 62.8 155 27.7
Psat4g125760 Pisum sativum HOM05D000197 ORTHO05D000114 2.7e-08 62.8 141 31.2
CDE01G0729 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.5e-08 62.4 116 30.2
CDE01G0755 Ceratophyllum demersum HOM05D000322 ORTHO05D000186 3.5e-08 62.4 153 25.5
Rhsim12G0123000 Rhododendron simsii HOM05D000197 ORTHO05D000114 3.5e-08 62.4 145 32.4
TAR365G0633 Trochodendron aralioides HOM05D000322 ORTHO05D000186 3.5e-08 62.4 144 31.9
Lalb_Chr03g0030521 Lupinus albus HOM05D001593 ORTHO05D010032 4.5e-08 62.0 138 30.4
MD16G1088600 Malus domestica HOM05D000197 ORTHO05D000114 4.5e-08 62.0 141 29.8
Atru.chr4.2935 Acer truncatum HOM05D000322 ORTHO05D000186 5.9e-08 61.6 154 27.3
TAR622G0624 Trochodendron aralioides HOM05D000197 ORTHO05D000114 5.9e-08 61.6 141 31.9
Aqoxy3G03061 Aquilegia oxysepala HOM05D000197 ORTHO05D000114 7.7e-08 61.2 141 31.9
CiPaw.07G113000 Carya illinoinensis HOM05D000322 ORTHO05D000186 7.7e-08 61.2 154 32.5
MBI14_g31146_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 7.7e-08 61.2 95 34.7
MD13G1088200 Malus domestica HOM05D000197 ORTHO05D000114 7.7e-08 61.2 141 30.5
Zm00001eb013990 Zea mays HOM05D000322 ORTHO05D000186 7.7e-08 61.2 146 34.2
Zm00001eb014000 Zea mays HOM05D000322 ORTHO05D000186 7.7e-08 61.2 146 34.2
Mapoly0064s0111 Marchantia polymorpha HOM05D000322 ORTHO05D000186 1.0e-07 60.8 146 32.9
Zm00001eb014010 Zea mays HOM05D000322 ORTHO05D000186 1.0e-07 60.8 146 32.9
SEGI_03749 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 1.3e-07 60.5 154 27.3
Lsat_1_v5_gn_6_114720 Lactuca sativa HOM05D000322 ORTHO05D000186 1.7e-07 60.1 153 30.1
TWI53G1719 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 1.7e-07 60.1 152 32.2
GSVIVG01020183001 Vitis vinifera HOM05D000197 ORTHO05D000114 1.7e-07 60.1 142 31.7
CiPaw.01G144000 Carya illinoinensis HOM05D000322 ORTHO05D000186 2.2e-07 59.7 154 27.9
GSVIVG01035074001 Vitis vinifera HOM05D000322 ORTHO05D000186 2.2e-07 59.7 153 35.3
Prupe.4G188400 Prunus persica HOM05D001593 ORTHO05D010032 2.9e-07 59.3 144 28.5
CAN.G524.26 Capsicum annuum HOM05D000322 ORTHO05D000186 3.8e-07 58.9 156 30.8
Prupe.8G265500 Prunus persica HOM05D000322 ORTHO05D000186 3.8e-07 58.9 154 31.2
TWI09G0541 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 3.8e-07 58.9 141 31.2
Lalb_Chr19g0134421 Lupinus albus HOM05D001593 ORTHO05D010032 5.0e-07 58.5 133 30.1
Cc01_g01380 Coffea canephora HOM05D001593 ORTHO05D010032 6.5e-07 58.2 121 32.2
Dinv29698 Davidia involucrata HOM05D000322 ORTHO05D000186 6.5e-07 58.2 154 33.8
Duzib268G1105 Durio zibethinus HOM05D000197 ORTHO05D000114 6.5e-07 58.2 146 33.6
HanXRQChr02g0054531 Helianthus annuus HOM05D001593 ORTHO05D002007 6.5e-07 58.2 119 32.8
PSO478G3712 Papaver somniferum HOM05D000197 ORTHO05D000114 6.5e-07 58.2 144 28.5
CiPaw.05G148600 Carya illinoinensis HOM05D000197 ORTHO05D000114 8.5e-07 57.8 147 29.9
Eucgr.A00133 Eucalyptus grandis HOM05D000322 ORTHO05D000186 8.5e-07 57.8 154 31.8
HanXRQChr02g0054541 Helianthus annuus HOM05D001593 ORTHO05D002007 8.5e-07 57.8 119 30.3
Psat4g024960 Pisum sativum HOM05D000322 ORTHO05D000186 8.5e-07 57.8 155 29.7
Prupe.1G258100 Prunus persica HOM05D000197 ORTHO05D000114 8.5e-07 57.8 141 27.7
SEGI_17416 Sequoiadendron giganteum HOM05D000322 ORTHO05D000186 8.5e-07 57.8 98 34.7
Haze_18643 Corylus avellana HOM05D000322 ORTHO05D000186 1.1e-06 57.4 140 32.1
Migut.G00116 Erythranthe guttata HOM05D000322 ORTHO05D000186 1.1e-06 57.4 149 32.9
Rhsim04G0230800 Rhododendron simsii HOM05D000322 ORTHO05D000186 1.1e-06 57.4 153 29.4
Gohir.A03G141700 Gossypium hirsutum HOM05D000197 ORTHO05D000114 1.5e-06 57.0 144 32.6
Gohir.D02G164700 Gossypium hirsutum HOM05D000197 ORTHO05D000114 1.5e-06 57.0 144 32.6
Gorai.005G184600 Gossypium raimondii HOM05D000197 ORTHO05D000114 1.5e-06 57.0 144 32.6
Potri.010G096000 Populus trichocarpa HOM05D000197 ORTHO05D000114 1.5e-06 57.0 131 32.1
COL.COLO4_23298 Corchorus olitorius HOM05D000322 ORTHO05D000186 1.9e-06 56.6 153 30.7
Gohir.D10G175800 Gossypium hirsutum HOM05D000322 ORTHO05D000186 1.9e-06 56.6 127 34.6
A07p13670 Brassica napus HOM05D000197 ORTHO05D000114 2.5e-06 56.2 146 31.5
BraA07t29119Z Brassica rapa HOM05D000197 ORTHO05D000114 2.5e-06 56.2 146 31.5
Oeu054421.1 Olea europaea HOM05D000322 ORTHO05D000186 2.5e-06 56.2 155 28.4
HPP92_013740 Vanilla planifolia HOM05D000322 ORTHO05D000186 2.5e-06 56.2 98 35.7
BcaC06g35074 Brassica carinata HOM05D000197 ORTHO05D000114 3.2e-06 55.8 140 32.1
Lsat_1_v5_gn_6_114941 Lactuca sativa HOM05D000322 ORTHO05D000186 3.2e-06 55.8 151 29.1
Nn4g25701 Nelumbo nucifera HOM05D000322 ORTHO05D000186 3.2e-06 55.8 153 30.7
TPR.G21805 Trifolium pratense HOM05D000322 ORTHO05D000186 3.2e-06 55.8 153 27.5
CiPaw.01G143300 Carya illinoinensis HOM05D000322 ORTHO05D000186 4.2e-06 55.5 154 31.2
Ca_21501_v3 Cicer arietinum L. HOM05D000322 ORTHO05D000186 4.2e-06 55.5 153 26.8
TPR.G25548 Trifolium pratense HOM05D000197 ORTHO05D000114 4.2e-06 55.5 143 31.5
Actinidia40327 Actinidia chinensis HOM05D000322 ORTHO05D000186 5.5e-06 55.1 153 32.7
Haze_01114 Corylus avellana HOM05D000322 ORTHO05D000186 5.5e-06 55.1 146 30.8
Haze_01116 Corylus avellana HOM05D000322 ORTHO05D000186 5.5e-06 55.1 146 30.8
Lj3A1050T27 Lonicera japonica HOM05D000197 ORTHO05D000114 5.5e-06 55.1 143 30.1
MBI14_g31144_MAGBIO Magnolia biondii HOM05D000322 ORTHO05D000186 5.5e-06 55.1 83 33.7
Nn4g25699 Nelumbo nucifera HOM05D000322 ORTHO05D000186 5.5e-06 55.1 97 33.0
BcaB03g14124 Brassica carinata HOM05D000197 ORTHO05D000114 7.2e-06 54.7 143 30.1
Eucgr.F03348 Eucalyptus grandis HOM05D001593 ORTHO05D010032 7.2e-06 54.7 124 31.5
Gorai.011G196600 Gossypium raimondii HOM05D000322 ORTHO05D000186 7.2e-06 54.7 127 34.6
Thecc.01G306600 Theobroma cacao HOM05D000322 ORTHO05D000186 7.2e-06 54.7 152 28.9
TWI75G0119 Tripterygium wilfordii HOM05D000197 ORTHO05D000114 7.2e-06 54.7 136 31.6
Glyma.06G249800 Glycine max HOM05D001593 ORTHO05D010032 9.4e-06 54.3 131 34.4
Lj3A1049T59 Lonicera japonica HOM05D000197 ORTHO05D000114 9.4e-06 54.3 120 33.3
Lalb_Chr07g0182221 Lupinus albus HOM05D000322 ORTHO05D000186 9.4e-06 54.3 153 27.5
Mapoly0064s0061 Marchantia polymorpha HOM05D008409 ORTHO05D010032 9.4e-06 54.3 151 27.2
Oeu006051.1 Olea europaea HOM05D000322 ORTHO05D000186 9.4e-06 54.3 147 29.9
TWI09G0811 Tripterygium wilfordii HOM05D000322 ORTHO05D000186 9.4e-06 54.3 152 28.9


User provided reference genes

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