Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0940 Selaginella moellendorffii HOM05D005353 ORTHO05D006248 1.6e-80 302.8 155 100.0
Mapoly0061s0084 Marchantia polymorpha HOM05D005353 ORTHO05D006248 5.2e-52 208.0 156 66.7
Pp3c9_8740 Physcomitrium patens HOM05D005353 ORTHO05D006248 1.1e-49 200.3 156 62.2
SEGI_40739 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.3e-47 193.4 156 62.2
Pp3c15_4650 Physcomitrium patens HOM05D005353 ORTHO05D006248 9.6e-46 187.2 156 59.0
CiPaw.02G068200 Carya illinoinensis HOM05D005353 ORTHO05D006248 1.9e-41 172.9 156 57.7
HPP92_012759 Vanilla planifolia HOM05D005353 ORTHO05D006248 1.9e-41 172.9 155 54.8
DCAR_023424 Daucus carota HOM05D005353 ORTHO05D006248 4.2e-41 171.8 156 55.1
ATR0796G336 Amborella trichopoda HOM05D005353 ORTHO05D006248 1.2e-40 170.2 156 57.1
Rhsim02G0049500 Rhododendron simsii HOM05D005353 ORTHO05D006248 1.6e-40 169.9 156 57.1
Manes.12G155100 Manihot esculenta HOM05D005353 ORTHO05D006248 2.1e-40 169.5 155 58.1
Aqoxy2G00444 Aquilegia oxysepala HOM05D005353 ORTHO05D006248 2.7e-40 169.1 155 55.5
Eucgr.H04153 Eucalyptus grandis HOM05D005353 ORTHO05D006248 2.7e-40 169.1 156 56.4
Gorai.004G265200 Gossypium raimondii HOM05D005353 ORTHO05D006248 2.7e-40 169.1 155 56.8
RcHm_v2.0_Chr4g0428081 Rosa chinensis HOM05D005353 ORTHO05D006248 2.7e-40 169.1 156 57.1
Gohir.D08G248600 Gossypium hirsutum HOM05D005353 ORTHO05D006248 4.6e-40 168.3 155 56.1
FvH4_4g21840 Fragaria vesca HOM05D005353 ORTHO05D006248 7.8e-40 167.5 156 55.8
FAN07G1699 Fragaria x ananassa HOM05D005353 ORTHO05D006248 7.8e-40 167.5 156 55.8
FAN12G4199 Fragaria x ananassa HOM05D005353 ORTHO05D006248 7.8e-40 167.5 156 55.8
FAN17G0053 Fragaria x ananassa HOM05D005353 ORTHO05D006248 7.8e-40 167.5 156 55.8
Gohir.A08G228300 Gossypium hirsutum HOM05D005353 ORTHO05D006248 7.8e-40 167.5 155 55.5
THA.LOC104821816 Tarenaya hassleriana HOM05D005353 ORTHO05D006248 7.8e-40 167.5 155 56.8
TAR633G0169 Trochodendron aralioides HOM05D005353 ORTHO05D006248 1.0e-39 167.2 155 54.8
Actinidia39944 Actinidia chinensis HOM05D005353 ORTHO05D006248 1.3e-39 166.8 156 55.1
arahy.Tifrunner.gnm1.ann1.XSBG43 Arachis hypogaea HOM05D005353 ORTHO05D006248 1.7e-39 166.4 155 55.5
Lsat_1_v5_gn_0_37861 Lactuca sativa HOM05D005353 ORTHO05D006248 1.7e-39 166.4 156 55.1
Prupe.1G209100 Prunus persica HOM05D005353 ORTHO05D006248 1.7e-39 166.4 156 55.8
SalBow7G1146 Salvia bowleyana HOM05D005353 ORTHO05D006248 2.3e-39 166.0 155 54.8
COL.COLO4_25111 Corchorus olitorius HOM05D005353 ORTHO05D006248 3.9e-39 165.2 154 57.1
Duzib116G0935 Durio zibethinus HOM05D005353 ORTHO05D006248 3.9e-39 165.2 155 56.8
Oeu002498.1 Olea europaea HOM05D005353 ORTHO05D006248 3.9e-39 165.2 155 52.9
GSVIVG01017718001 Vitis vinifera HOM05D005353 ORTHO05D006248 5.1e-39 164.9 155 55.5
Hma1.2p1_1067F.1_g253910 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 6.6e-39 164.5 156 56.4
Cfa015762 Carpinus fangiana HOM05D005353 ORTHO05D006248 1.1e-38 163.7 156 56.4
CBR_g40142 Chara braunii HOM05D005353 ORTHO05D006248 1.5e-38 163.3 158 55.1
CAN.G1337.25 Capsicum annuum HOM05D005353 ORTHO05D006248 1.9e-38 162.9 156 53.2
Lalb_Chr12g0200451 Lupinus albus HOM05D005353 ORTHO05D006248 1.9e-38 162.9 156 53.8
Thecc.08G167300 Theobroma cacao HOM05D005353 ORTHO05D006248 2.5e-38 162.5 154 55.8
CANSAT78G1361 Cannabis sativa HOM05D005353 ORTHO05D006248 3.3e-38 162.2 156 55.8
Lj6A705T54 Lonicera japonica HOM05D005353 ORTHO05D006248 3.3e-38 162.2 155 52.9
Lj2g0027327 Lotus japonicus HOM05D005353 ORTHO05D006248 3.3e-38 162.2 156 55.1
MBI18_g03863_MAGBIO Magnolia biondii HOM05D005353 ORTHO05D006248 4.3e-38 161.8 155 52.9
Sc10g0003710 Simmondsia chinensis HOM05D005353 ORTHO05D006248 5.6e-38 161.4 155 53.5
Zm00001eb332500 Zea mays HOM05D005353 ORTHO05D006248 5.6e-38 161.4 154 53.9
MSTRG.14933 Avicennia marina HOM05D005353 ORTHO05D006248 7.3e-38 161.0 155 54.2
Ciclev10021112m.g Citrus clementina HOM05D005353 ORTHO05D006248 7.3e-38 161.0 155 55.5
PSO761G0146 Papaver somniferum HOM05D005353 ORTHO05D006248 7.3e-38 161.0 155 55.5
Potri.010G004600 Populus trichocarpa HOM05D005353 ORTHO05D006248 7.3e-38 161.0 155 54.2
Solyc07g042930.3 Solanum lycopersicum HOM05D005353 ORTHO05D006248 7.3e-38 161.0 156 51.9
Aa31LG8G4490 Aethionema arabicum HOM05D005353 ORTHO05D006248 9.6e-38 160.6 155 55.5
Peaxi162Scf00322g00917 Petunia axillaris HOM05D005353 ORTHO05D006248 9.6e-38 160.6 156 53.2
QL06p014836 Quercus lobata HOM05D005353 ORTHO05D006248 9.6e-38 160.6 184 49.5
SGA_v2.0_scaffold73G24528 Striga asiatica HOM05D005353 ORTHO05D006248 9.6e-38 160.6 155 53.5
Sopen07g022530 Solanum pennellii HOM05D005353 ORTHO05D006248 1.3e-37 160.2 156 51.3
AL3G30690 Arabidopsis lyrata HOM05D005353 ORTHO05D006248 1.6e-37 159.8 155 54.2
AT3G17611 Arabidopsis thaliana HOM05D005353 ORTHO05D006248 1.6e-37 159.8 155 54.2
Cc04_g14300 Coffea canephora HOM05D005353 ORTHO05D006248 1.6e-37 159.8 157 53.5
Ca_21356_v3 Cicer arietinum L. HOM05D005353 ORTHO05D006248 2.1e-37 159.5 155 53.5
Nitab4.5_0007722g0010 Nicotiana tabacum HOM05D005353 ORTHO05D006248 2.1e-37 159.5 156 53.2
PSO210G1641 Papaver somniferum HOM05D005353 ORTHO05D006248 2.1e-37 159.5 154 55.2
PGSC0003DMG401013561 Solanum tuberosum HOM05D005353 ORTHO05D006248 2.1e-37 159.5 156 51.3
Atru.chr4.3195 Acer truncatum HOM05D005353 ORTHO05D006248 2.8e-37 159.1 156 53.8
PGR004G1856 Punica granatum HOM05D005353 ORTHO05D006248 2.8e-37 159.1 156 54.5
CSS0044252 Camellia sinensis var. sinensis HOM05D005353 ORTHO05D006248 3.6e-37 158.7 156 55.1
Cpa.g.sc146.5 Carica papaya HOM05D005353 ORTHO05D006248 3.6e-37 158.7 154 53.2
CARHR092930 Cardamine hirsuta HOM05D005353 ORTHO05D006248 4.8e-37 158.3 155 53.5
Os01g0283500 Oryza sativa ssp. japonica HOM05D005353 ORTHO05D006248 4.8e-37 158.3 154 52.6
Peaxi162Scf01347g00135 Petunia axillaris HOM05D005353 ORTHO05D006248 4.8e-37 158.3 155 51.6
Phvul.003G125100 Phaseolus vulgaris HOM05D005353 ORTHO05D006248 4.8e-37 158.3 155 54.2
Hund17553 Selenicereus undatus HOM05D005353 ORTHO05D006248 4.8e-37 158.3 156 52.6
Zm00001eb227080 Zea mays HOM05D005353 ORTHO05D006248 4.8e-37 158.3 154 53.9
EL10Ac1g01664 Beta vulgaris HOM05D005353 ORTHO05D006248 6.2e-37 157.9 155 52.9
ECA246G2061 Erigeron canadensis HOM05D005353 ORTHO05D006248 6.2e-37 157.9 155 52.9
Migut.M00009 Erythranthe guttata HOM05D005353 ORTHO05D006248 6.2e-37 157.9 156 54.5
VMungo1215G2294 Vigna mungo HOM05D005353 ORTHO05D006248 6.2e-37 157.9 155 54.2
Carub.0003s1733 Capsella rubella HOM05D005353 ORTHO05D006248 1.1e-36 157.1 155 53.5
Haze_00741 Corylus avellana HOM05D005353 ORTHO05D006248 1.1e-36 157.1 156 53.8
Glyma.17G043300 Glycine max HOM05D005353 ORTHO05D006248 1.1e-36 157.1 155 53.5
AUR62022362 Chenopodium quinoa HOM05D005353 ORTHO05D006248 1.4e-36 156.8 155 52.9
Sabra10G0004000 Salix brachista HOM05D005353 ORTHO05D006248 1.4e-36 156.8 155 52.3
arahy.Tifrunner.gnm1.ann1.ETFP64 Arachis hypogaea HOM05D005353 ORTHO05D006248 1.8e-36 156.4 155 54.8
AUR62034345 Chenopodium quinoa HOM05D005353 ORTHO05D006248 1.8e-36 156.4 155 52.9
BcaB04g20833 Brassica carinata HOM05D005353 ORTHO05D006248 2.4e-36 156.0 155 54.2
A01p36730 Brassica napus HOM05D005353 ORTHO05D006248 2.4e-36 156.0 155 54.2
BraA01t03734Z Brassica rapa HOM05D005353 ORTHO05D006248 2.4e-36 156.0 155 54.2
TWI73G0458 Tripterygium wilfordii HOM05D005353 ORTHO05D006248 3.1e-36 155.6 155 53.5
Sp3g15750 Schrenkiella parvula HOM05D005353 ORTHO05D006248 4.0e-36 155.2 155 53.5
Glyma.13G116600 Glycine max HOM05D005353 ORTHO05D006248 5.3e-36 154.8 155 52.9
BcaC05g28769 Brassica carinata HOM05D005353 ORTHO05D006248 6.9e-36 154.5 155 52.3
HanXRQChr05g0148921 Helianthus annuus HOM05D005353 ORTHO05D006248 6.9e-36 154.5 155 51.0
C05p48760 Brassica napus HOM05D005353 ORTHO05D006248 9.0e-36 154.1 155 52.9
BolC5t33612H Brassica oleracea HOM05D005353 ORTHO05D006248 9.0e-36 154.1 155 52.9
BcaC09g48719 Brassica carinata HOM05D005353 ORTHO05D006248 1.5e-35 153.3 155 52.9
Thhalv10021096m.g Eutrema salsugineum HOM05D005353 ORTHO05D006248 1.5e-35 153.3 155 52.9
A05p32220 Brassica napus HOM05D005353 ORTHO05D006248 2.0e-35 152.9 155 52.3
BraA05t22052Z Brassica rapa HOM05D005353 ORTHO05D006248 2.0e-35 152.9 155 52.9
Medtr4g123573 Medicago truncatula HOM05D005353 ORTHO05D006248 2.0e-35 152.9 154 50.0
C01p46630 Brassica napus HOM05D005353 ORTHO05D006248 4.5e-35 151.8 155 52.3
BolC1t04628H Brassica oleracea HOM05D005353 ORTHO05D006248 4.5e-35 151.8 155 52.3
Cfa015759 Carpinus fangiana HOM05D005353 ORTHO05D006248 4.5e-35 151.8 155 54.2
Psat4g020440 Pisum sativum HOM05D005353 ORTHO05D006248 9.9e-35 150.6 155 51.0
Nitab4.5_0000019g0100 Nicotiana tabacum HOM05D005353 ORTHO05D006248 1.4e-33 146.7 180 46.7
SHI11368 Sapria himalayana HOM05D005353 ORTHO05D006248 4.6e-32 141.7 202 42.1
Sed0018181 Sechium edule HOM05D005353 ORTHO05D006248 6.0e-32 141.4 155 49.0
AagrBONN_evm.TU.Sc2ySwM_368.2525 Anthoceros agrestis HOM05D005353 ORTHO05D006248 3.0e-31 139.0 214 40.2
AagrBONN_evm.TU.Sc2ySwM_368.2528 Anthoceros agrestis HOM05D005353 ORTHO05D006248 5.1e-31 138.3 213 40.8
MELO3C008914.2 Cucumis melo HOM05D005353 ORTHO05D006248 8.7e-31 137.5 153 47.7
ClCG04G002200 Citrullus lanatus HOM05D005353 ORTHO05D006248 1.1e-30 137.1 156 46.2
vmacro15495 Vaccinium macrocarpon HOM05D005353 ORTHO05D006248 1.1e-30 137.1 227 38.8
CsaV3_4G030510 Cucumis sativus L. HOM05D005353 ORTHO05D006248 4.3e-30 135.2 153 47.1
TPR.G12683 Trifolium pratense HOM05D005353 ORTHO05D006248 1.6e-29 133.3 155 49.7
AagrBONN_evm.TU.Sc2ySwM_368.2527 Anthoceros agrestis HOM05D005353 ORTHO05D006248 6.2e-29 131.3 216 40.3
SEGI_08776 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.2e-27 127.1 113 57.5
Cre03.g204400 Chlamydomonas reinhardtii HOM05D005353 ORTHO05D006248 1.5e-27 126.7 170 45.9
SEGI_33584 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.5e-27 126.7 111 58.6
Dinv29491 Davidia involucrata HOM05D005353 ORTHO05D006248 2.6e-27 125.9 111 56.8
BcaB06g25831 Brassica carinata HOM05D005353 ORTHO05D006248 1.7e-26 123.2 148 45.9
Lsat_1_v5_gn_6_61961 Lactuca sativa HOM05D005353 ORTHO05D006248 1.7e-26 123.2 155 44.5
Hma1.2p1_3133F.1_g332970 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 2.7e-24 115.9 112 58.0
Lsat_1_v5_gn_4_185280 Lactuca sativa HOM05D005353 ORTHO05D006248 6.2e-21 104.8 73 63.0
unitig_746.g26623 Utricularia gibba HOM05D000651 ORTHO05D001126 1.4e-20 103.6 111 51.4
MCO13G541 Micromonas commoda HOM05D005353 ORTHO05D006248 2.8e-13 79.3 203 33.0
MCO13G118 Micromonas commoda HOM05D005353 ORTHO05D006248 1.1e-12 77.4 156 33.3
Haze_00742 Corylus avellana HOM05D005353 ORTHO05D006248 1.8e-12 76.6 91 51.6
CAN.G357.8 Capsicum annuum HOM05D005353 ORTHO05D006248 1.5e-11 73.6 91 46.2
CAN.G1337.26 Capsicum annuum HOM05D005353 ORTHO05D006248 4.5e-11 72.0 156 35.9
Hund15041 Selenicereus undatus HOM05D006729 ORTHO05D008502 1.7e-10 70.1 150 31.3
PGR142G3090 Punica granatum HOM05D006729 ORTHO05D008502 3.8e-10 68.9 156 32.7
PGSC0003DMG400028130 Solanum tuberosum HOM05D006729 ORTHO05D008502 3.8e-10 68.9 156 34.0
Nitab4.5_0008653g0030 Nicotiana tabacum HOM05D006729 ORTHO05D008502 1.1e-09 67.4 154 33.8
Solyc10g081600.2 Solanum lycopersicum HOM05D006729 ORTHO05D008502 1.4e-09 67.0 156 34.0
CAN.G128.158 Capsicum annuum HOM05D006729 ORTHO05D008502 1.9e-09 66.6 156 32.7
Sopen10g032110 Solanum pennellii HOM05D006729 ORTHO05D008502 2.5e-09 66.2 156 33.3
COL.COLO4_29456 Corchorus olitorius HOM05D006729 ORTHO05D008502 7.2e-09 64.7 157 31.2
Sc01g0005190 Simmondsia chinensis HOM05D006729 ORTHO05D008502 1.2e-08 63.9 157 33.1
GSVIVG01022493001 Vitis vinifera HOM05D006729 ORTHO05D008502 2.1e-08 63.2 156 32.1
Aqoxy1G00566 Aquilegia oxysepala HOM05D006729 ORTHO05D008502 2.7e-08 62.8 156 29.5
Lalb_Chr20g0111151 Lupinus albus HOM05D006729 ORTHO05D008502 2.7e-08 62.8 156 32.7
Peaxi162Scf00060g01414 Petunia axillaris HOM05D006729 ORTHO05D008502 2.7e-08 62.8 150 29.3
Solyc05g016380.4 Solanum lycopersicum HOM05D005353 ORTHO05D006248 3.6e-08 62.4 204 28.4
CDE02G2900 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 6.1e-08 61.6 77 48.1
Cre03.g144727 Chlamydomonas reinhardtii HOM05D005353 ORTHO05D006248 6.1e-08 61.6 181 33.1
Mapoly0022s0048 Marchantia polymorpha HOM05D006729 ORTHO05D008502 6.1e-08 61.6 155 32.3
Lalb_Chr25g0287741 Lupinus albus HOM05D006729 ORTHO05D008502 7.9e-08 61.2 159 33.3
PSO384G1090 Papaver somniferum HOM05D006729 ORTHO05D008502 1.0e-07 60.8 154 29.9
CiPaw.09G025400 Carya illinoinensis HOM05D006729 ORTHO05D008502 1.8e-07 60.1 156 32.7
PRCOL_00006238 Prasinoderma coloniale HOM05D006729 ORTHO05D008502 1.8e-07 60.1 103 34.0
SEGI_22454 Sequoiadendron giganteum HOM05D022269 ORTHO05D006248 1.8e-07 60.1 98 34.7
EL10Ac5g11780 Beta vulgaris HOM05D006729 ORTHO05D008502 2.3e-07 59.7 157 30.6
Atru.BG.227.p Acer truncatum HOM05D006729 ORTHO05D008502 3.0e-07 59.3 155 29.7
Atru.chr8.1243 Acer truncatum HOM05D006729 ORTHO05D008502 3.0e-07 59.3 155 29.7
AUR62036295 Chenopodium quinoa HOM05D006729 ORTHO05D008502 3.0e-07 59.3 126 33.3
Cre01.g050350 Chlamydomonas reinhardtii HOM05D006729 ORTHO05D008502 3.0e-07 59.3 128 30.5
CDE10G0526 Ceratophyllum demersum HOM05D006729 ORTHO05D008502 3.9e-07 58.9 156 28.2
AUR62038406 Chenopodium quinoa HOM05D006729 ORTHO05D008502 3.9e-07 58.9 156 30.8
Eucgr.K01887 Eucalyptus grandis HOM05D006729 ORTHO05D008502 3.9e-07 58.9 134 30.6
Psat0s2632g0080 Pisum sativum HOM05D006729 ORTHO05D008502 3.9e-07 58.9 156 31.4
PSO339G2226 Papaver somniferum HOM05D006729 ORTHO05D008502 5.1e-07 58.5 154 29.2
SEGI_37310 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.1e-06 57.4 43 60.5
TAR623G1267 Trochodendron aralioides HOM05D006729 ORTHO05D008502 1.1e-06 57.4 156 31.4
SEGI_37450 Sequoiadendron giganteum HOM05D005353 ORTHO05D006248 1.5e-06 57.0 42 61.9
Sed0008871 Sechium edule HOM05D006729 ORTHO05D008502 3.3e-06 55.8 159 30.8
CDE09G0037 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 4.3e-06 55.5 72 43.1
Hma1.2p1_3133F.1_g332980 Hydrangea macrophylla HOM05D005353 ORTHO05D006248 4.3e-06 55.5 42 54.8
CDE02G3498 Ceratophyllum demersum HOM05D005353 ORTHO05D006248 5.7e-06 55.1 41 56.1


User provided reference genes

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