Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 3.1e-193 678.3 349 100.0
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 6.2e-93 345.1 344 51.2
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 2.7e-88 329.7 331 51.7
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 2.2e-82 310.1 330 51.2
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 2.3e-79 300.1 342 48.2
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 2.8e-77 293.1 335 46.3
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 3.6e-77 292.7 338 46.2
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.4e-76 290.8 331 46.5
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.1e-76 289.7 347 44.4
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 9.0e-76 288.1 332 48.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 9.0e-76 288.1 326 46.9
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 2.0e-75 287.0 331 46.2
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 3.4e-75 286.2 331 45.6
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.4e-75 286.2 328 47.9
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.5e-75 285.8 326 46.6
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 4.5e-75 285.8 331 45.9
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 4.5e-75 285.8 324 45.4
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.3e-74 284.3 332 45.5
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 1.3e-74 284.3 326 46.3
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.3e-74 284.3 331 44.7
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 1.7e-74 283.9 331 45.0
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.7e-74 283.9 331 46.5
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 2.2e-74 283.5 336 44.6
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 4.9e-74 282.3 324 45.4
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 6.4e-74 282.0 336 45.8
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 6.4e-74 282.0 336 45.8
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 1.4e-73 280.8 336 44.9
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 2.4e-73 280.0 336 44.9
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.4e-73 280.0 336 44.6
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 3.2e-73 279.6 333 45.3
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 3.2e-73 279.6 333 45.3
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 4.2e-73 279.3 336 45.2
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 4.2e-73 279.3 336 44.6
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 5.4e-73 278.9 336 44.6
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 7.1e-73 278.5 331 44.4
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 7.1e-73 278.5 331 44.7
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 9.3e-73 278.1 347 43.2
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 9.3e-73 278.1 324 45.7
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.2e-72 277.7 336 44.3
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.2e-72 277.7 328 46.0
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.2e-72 277.7 336 43.8
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 1.6e-72 277.3 334 45.2
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.7e-72 276.6 329 45.0
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.5e-72 276.2 331 44.4
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.6e-72 275.8 324 44.4
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 6.0e-72 275.4 337 44.8
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 6.0e-72 275.4 330 45.5
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 7.9e-72 275.0 336 43.5
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.9e-72 275.0 330 45.2
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 7.9e-72 275.0 334 44.3
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 7.9e-72 275.0 331 45.9
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.3e-71 274.2 331 44.1
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.8e-71 273.9 334 45.2
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 2.3e-71 273.5 324 45.1
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 3.0e-71 273.1 331 44.4
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 3.0e-71 273.1 295 47.1
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.0e-71 273.1 334 45.5
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.0e-71 273.1 334 44.9
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 3.0e-71 273.1 364 42.3
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 3.9e-71 272.7 334 47.0
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 5.1e-71 272.3 333 43.8
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 5.1e-71 272.3 331 45.3
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 6.7e-71 271.9 334 45.5
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.1e-70 271.2 335 44.2
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.1e-70 271.2 364 42.3
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.5e-70 270.8 331 43.2
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.9e-70 270.4 333 43.8
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.3e-70 269.2 319 46.7
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 5.6e-70 268.9 326 43.3
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 5.6e-70 268.9 334 44.9
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.6e-70 268.9 330 44.8
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 7.4e-70 268.5 331 44.7
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.3e-69 267.7 345 42.9
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 1.6e-69 267.3 331 44.7
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 2.8e-69 266.5 334 44.9
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 3.7e-69 266.2 345 42.0
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 4.8e-69 265.8 346 42.8
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.2e-69 265.4 327 43.1
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.8e-68 263.8 346 41.9
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 2.4e-68 263.5 336 44.9
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 2.4e-68 263.5 346 41.3
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 6.9e-68 261.9 329 42.6
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 2.0e-67 260.4 275 48.7
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 3.4e-67 259.6 373 39.9
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 5.5e-65 252.3 376 38.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 9.3e-65 251.5 382 38.5
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.0e-63 248.1 338 42.9
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.0e-63 248.1 328 43.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 1.0e-63 248.1 219 56.6
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 3.0e-63 246.5 338 42.6
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.1e-63 245.7 236 54.7
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 6.7e-63 245.4 328 40.5
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 8.7e-63 245.0 219 54.8
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.9e-62 243.8 341 40.2
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.3e-61 241.1 337 41.5
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 6.2e-61 238.8 352 40.3
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 8.2e-61 238.4 335 40.0
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 1.2e-59 234.6 261 44.8
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.5e-59 234.2 281 44.8
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 2.0e-59 233.8 332 41.0
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 4.2e-57 226.1 334 39.8
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 4.2e-57 226.1 294 41.5
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 3.9e-55 219.5 335 37.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.1e-55 219.2 330 39.1
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.1e-54 218.0 330 40.0
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.5e-54 216.9 183 57.4
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.7e-53 213.0 249 45.8
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 9.0e-52 208.4 192 54.2
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 3.4e-51 206.5 260 44.2
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 7.6e-51 205.3 266 42.5
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 1.5e-46 191.0 295 37.3
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 6.3e-45 185.7 166 56.0
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 2.2e-42 177.2 303 38.6
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 3.2e-41 173.3 350 33.1
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 7.2e-41 172.2 163 50.9
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 4.7e-40 169.5 378 33.3
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 6.1e-40 169.1 332 34.3
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.4e-38 162.2 169 49.7
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 4.1e-36 156.4 175 46.9
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.4e-35 153.3 357 31.4
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.1e-28 131.7 121 48.8
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 1.6e-27 127.9 338 30.8
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 1.7e-21 107.8 204 37.3
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 7.0e-20 102.4 169 36.1
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 2.7e-19 100.5 144 39.6
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 2.0e-14 84.3 79 53.2
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 5.9e-11 72.8 59 57.6
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.3e-10 71.6 103 33.0
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 5.0e-10 69.7 156 32.1
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 8.6e-10 68.9 186 32.3
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 3.4e-06 57.0 44 54.5


User provided reference genes

Program Settings