Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0854 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 0.0e+00 1203.0 623 100.0
SMO367G0212 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 5.3e-188 661.8 521 73.1
SMO367G0417 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 3.2e-169 599.4 587 63.2
Mapoly0032s0042 Marchantia polymorpha HOM05D003681 ORTHO05D004703 1.2e-150 537.7 711 48.4
Pp3c4_18170 Physcomitrium patens HOM05D003681 ORTHO05D004703 1.4e-148 530.8 569 53.6
Pp3c13_14720 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.0e-146 523.1 577 52.3
Pp3c13_14730 Physcomitrium patens HOM05D003681 ORTHO05D004703 3.0e-146 523.1 577 52.3
Sc03g0006880 Simmondsia chinensis HOM05D003681 ORTHO05D004703 5.6e-137 492.3 605 50.2
Manes.17G107300 Manihot esculenta HOM05D003681 ORTHO05D004703 4.9e-133 479.2 643 46.8
ATR0824G011 Amborella trichopoda HOM05D003681 ORTHO05D004703 6.4e-133 478.8 603 48.9
HPP92_006269 Vanilla planifolia HOM05D003681 ORTHO05D004703 1.1e-132 478.0 664 47.4
Atru.chr6.2486 Acer truncatum HOM05D003681 ORTHO05D004703 2.4e-132 476.9 669 46.0
Aqoxy3G01435 Aquilegia oxysepala HOM05D003681 ORTHO05D004703 4.1e-132 476.1 682 45.0
Sopen02g038450 Solanum pennellii HOM05D003681 ORTHO05D004703 4.1e-132 476.1 605 48.9
Gorai.011G093100 Gossypium raimondii HOM05D003681 ORTHO05D004703 5.4e-132 475.7 608 48.7
Thecc.04G027500 Theobroma cacao HOM05D003681 ORTHO05D004703 5.4e-132 475.7 664 46.2
Hund06716 Selenicereus undatus HOM05D003681 ORTHO05D004703 7.1e-132 475.3 605 48.9
Solyc02g093810.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 9.2e-132 474.9 607 48.8
Gohir.D10G085200 Gossypium hirsutum HOM05D003681 ORTHO05D004703 1.6e-131 474.2 608 48.5
EL10Ac4g08610 Beta vulgaris HOM05D003681 ORTHO05D004703 2.1e-131 473.8 611 48.1
A07p20510 Brassica napus HOM05D003681 ORTHO05D004703 2.1e-131 473.8 621 47.2
BcaB02g07929 Brassica carinata HOM05D003681 ORTHO05D004703 2.7e-131 473.4 621 47.8
Ciclev10014307m.g Citrus clementina HOM05D003681 ORTHO05D004703 2.7e-131 473.4 650 47.4
Gorai.006G038600 Gossypium raimondii HOM05D003681 ORTHO05D004703 2.7e-131 473.4 685 45.4
Duzib187G0106 Durio zibethinus HOM05D003681 ORTHO05D004703 3.5e-131 473.0 659 46.1
MBI11_g11079_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 3.5e-131 473.0 645 46.8
AL7G49000 Arabidopsis lyrata HOM05D003681 ORTHO05D004703 4.6e-131 472.6 642 47.2
CAN.G473.58 Capsicum annuum HOM05D003681 ORTHO05D004703 6.0e-131 472.2 612 48.5
Thhalv10027657m.g Eutrema salsugineum HOM05D003681 ORTHO05D004703 6.0e-131 472.2 685 44.7
Potri.001G337700 Populus trichocarpa HOM05D003681 ORTHO05D004703 6.0e-131 472.2 629 47.9
Aa31LG9G900 Aethionema arabicum HOM05D003681 ORTHO05D004703 7.8e-131 471.9 641 46.8
C04p47540 Brassica napus HOM05D003681 ORTHO05D004703 7.8e-131 471.9 623 47.0
BolC4t26356H Brassica oleracea HOM05D003681 ORTHO05D004703 7.8e-131 471.9 623 46.9
CsaV3_3G027310 Cucumis sativus L. HOM05D003681 ORTHO05D004703 7.8e-131 471.9 619 47.3
Gohir.D09G033600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 7.8e-131 471.9 625 47.7
Peaxi162Scf00420g00351 Petunia axillaris HOM05D003681 ORTHO05D004703 7.8e-131 471.9 606 47.7
Zm00001eb235200 Zea mays HOM05D003681 ORTHO05D004703 7.8e-131 471.9 604 48.5
Potri.001G337600 Populus trichocarpa HOM05D003681 ORTHO05D004703 1.0e-130 471.5 609 48.6
Sp7g01150 Schrenkiella parvula HOM05D003681 ORTHO05D004703 1.3e-130 471.1 623 47.4
ClCG05G013220 Citrullus lanatus HOM05D003681 ORTHO05D004703 1.7e-130 470.7 608 47.4
PGSC0003DMG400020227 Solanum tuberosum HOM05D003681 ORTHO05D004703 1.7e-130 470.7 603 48.3
TAR374G1530 Trochodendron aralioides HOM05D003681 ORTHO05D004703 3.0e-130 469.9 622 47.6
BcaB06g27549 Brassica carinata HOM05D003681 ORTHO05D004703 5.1e-130 469.2 604 48.0
BolC6t37131H Brassica oleracea HOM05D003681 ORTHO05D004703 5.1e-130 469.2 625 46.9
Carub.0007s3474 Capsella rubella HOM05D003681 ORTHO05D004703 5.1e-130 469.2 627 47.4
Sed0015235 Sechium edule HOM05D003681 ORTHO05D004703 5.1e-130 469.2 618 48.1
AT5G40740 Arabidopsis thaliana HOM05D003681 ORTHO05D004703 6.6e-130 468.8 625 47.4
Cpa.g.sc130.41 Carica papaya HOM05D003681 ORTHO05D004703 6.6e-130 468.8 680 45.1
VMungo0464G1197 Vigna mungo HOM05D003681 ORTHO05D004703 6.6e-130 468.8 638 46.2
GSVIVG01001851001 Vitis vinifera HOM05D003681 ORTHO05D004703 8.6e-130 468.4 623 47.0
C06p19360 Brassica napus HOM05D003681 ORTHO05D004703 1.1e-129 468.0 621 46.5
BraA07t29742Z Brassica rapa HOM05D003681 ORTHO05D004703 1.1e-129 468.0 625 46.9
BraA04t17035Z Brassica rapa HOM05D003681 ORTHO05D004703 1.5e-129 467.6 623 46.5
Cc07_g00400 Coffea canephora HOM05D003681 ORTHO05D004703 1.5e-129 467.6 602 47.7
Manes.15G156300 Manihot esculenta HOM05D003681 ORTHO05D004703 1.5e-129 467.6 616 47.6
Gohir.A09G033400 Gossypium hirsutum HOM05D003681 ORTHO05D004703 2.5e-129 466.8 687 45.0
Lj2g0006828 Lotus japonicus HOM05D003681 ORTHO05D004703 2.5e-129 466.8 621 47.7
THA.LOC104805345 Tarenaya hassleriana HOM05D003681 ORTHO05D004703 3.3e-129 466.5 623 47.4
arahy.Tifrunner.gnm1.ann1.0QF2GW Arachis hypogaea HOM05D003681 ORTHO05D004703 4.3e-129 466.1 601 48.3
A04p13760 Brassica napus HOM05D003681 ORTHO05D004703 4.3e-129 466.1 625 46.7
CARHR213770 Cardamine hirsuta HOM05D003681 ORTHO05D004703 7.3e-129 465.3 657 45.8
MD17G1018200 Malus domestica HOM05D003681 ORTHO05D004703 7.3e-129 465.3 609 47.5
vmacro05923 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 7.3e-129 465.3 608 47.9
BcaC08g44481 Brassica carinata HOM05D003681 ORTHO05D004703 9.6e-129 464.9 621 46.4
Glyma.19G077600 Glycine max HOM05D003681 ORTHO05D004703 9.6e-129 464.9 632 46.7
Prupe.3G299500 Prunus persica HOM05D003681 ORTHO05D004703 9.6e-129 464.9 621 46.2
Nn4g22444 Nelumbo nucifera HOM05D003681 ORTHO05D004703 1.2e-128 464.5 620 47.9
Eucgr.I01693 Eucalyptus grandis HOM05D003681 ORTHO05D004703 2.1e-128 463.8 683 44.4
Pp3c3_25790 Physcomitrium patens HOM05D003681 ORTHO05D004703 2.1e-128 463.8 447 58.2
PGSC0003DMG400006971 Solanum tuberosum HOM05D003681 ORTHO05D004703 2.1e-128 463.8 609 48.1
Phvul.004G057300 Phaseolus vulgaris HOM05D003681 ORTHO05D004703 4.7e-128 462.6 656 45.0
AUR62036017 Chenopodium quinoa HOM05D003681 ORTHO05D004703 6.2e-128 462.2 594 48.3
MD09G1017400 Malus domestica HOM05D003681 ORTHO05D004703 6.2e-128 462.2 614 48.0
PGR142G3554 Punica granatum HOM05D003681 ORTHO05D004703 8.1e-128 461.8 620 47.9
CiPaw.04G033000 Carya illinoinensis HOM05D003681 ORTHO05D004703 1.1e-127 461.5 684 44.3
PSO017G2495 Papaver somniferum HOM05D003681 ORTHO05D004703 1.1e-127 461.5 624 47.4
Sed0021158 Sechium edule HOM05D003681 ORTHO05D004703 1.1e-127 461.5 609 47.1
Glyma.05G073400 Glycine max HOM05D003681 ORTHO05D004703 1.4e-127 461.1 605 47.4
PSO478G5006 Papaver somniferum HOM05D003681 ORTHO05D004703 1.4e-127 461.1 615 48.0
CSS0025950 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.8e-127 460.7 618 46.8
CANSAT64G2654 Cannabis sativa HOM05D003681 ORTHO05D004703 1.8e-127 460.7 644 45.0
Sopen02g017120 Solanum pennellii HOM05D003681 ORTHO05D004703 2.4e-127 460.3 615 47.5
Gohir.A11G065000 Gossypium hirsutum HOM05D003681 ORTHO05D004703 8.9e-127 458.4 600 47.2
HanXRQChr07g0199161 Helianthus annuus HOM05D003681 ORTHO05D004703 1.5e-126 457.6 595 47.4
SGA_v2.0_scaffold18G08242 Striga asiatica HOM05D003681 ORTHO05D004703 1.5e-126 457.6 626 47.0
Gohir.A10G160600 Gossypium hirsutum HOM05D003681 ORTHO05D004703 3.4e-126 456.4 536 50.4
Os02g0329300 Oryza sativa ssp. japonica HOM05D003681 ORTHO05D004703 3.4e-126 456.4 605 48.1
CAN.G1057.25 Capsicum annuum HOM05D003681 ORTHO05D004703 4.4e-126 456.1 610 46.2
QL02p072923 Quercus lobata HOM05D003681 ORTHO05D004703 5.8e-126 455.7 684 44.7
CiPaw.03G050400 Carya illinoinensis HOM05D003681 ORTHO05D004703 9.9e-126 454.9 683 43.2
COL.COLO4_29274 Corchorus olitorius HOM05D003681 ORTHO05D004703 1.7e-125 454.1 614 46.7
RcHm_v2.0_Chr2g0174171 Rosa chinensis HOM05D003681 ORTHO05D004703 2.2e-125 453.8 615 45.7
TWI36G0744 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 2.2e-125 453.8 675 43.7
Lj7A605G77 Lonicera japonica HOM05D003681 ORTHO05D004703 2.9e-125 453.4 613 47.1
Lalb_Chr02g0157941 Lupinus albus HOM05D003681 ORTHO05D004703 2.9e-125 453.4 632 45.6
Gohir.D11G069300 Gossypium hirsutum HOM05D003681 ORTHO05D004703 4.9e-125 452.6 606 47.0
Ca_04403_v3 Cicer arietinum L. HOM05D003681 ORTHO05D004703 6.4e-125 452.2 672 43.9
SalBow1G2960 Salvia bowleyana HOM05D003681 ORTHO05D004703 8.4e-125 451.8 601 47.8
SalBow1G7977 Salvia bowleyana HOM05D003681 ORTHO05D004703 8.4e-125 451.8 601 47.8
CSS0035050 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 1.4e-124 451.1 609 46.5
Migut.H00059 Erythranthe guttata HOM05D003681 ORTHO05D004703 1.4e-124 451.1 608 46.5
TAR622G1195 Trochodendron aralioides HOM05D003681 ORTHO05D004703 1.4e-124 451.1 619 46.4
vmacro18313 Vaccinium macrocarpon HOM05D003681 ORTHO05D004703 1.4e-124 451.1 615 45.9
Actinidia18423 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.9e-124 450.7 619 46.4
CSS0007013 Camellia sinensis var. sinensis HOM05D003681 ORTHO05D004703 2.4e-124 450.3 609 46.5
TAR371G0788 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.4e-124 450.3 623 46.7
Cfa007279 Carpinus fangiana HOM05D003681 ORTHO05D004703 3.2e-124 449.9 665 45.1
Nitab4.5_0001863g0130 Nicotiana tabacum HOM05D003681 ORTHO05D004703 3.2e-124 449.9 609 46.8
AUR62035509 Chenopodium quinoa HOM05D003681 ORTHO05D004703 7.1e-124 448.7 595 47.9
Gorai.007G074100 Gossypium raimondii HOM05D003681 ORTHO05D004703 1.6e-123 447.6 606 46.9
TAR374G1355 Trochodendron aralioides HOM05D003681 ORTHO05D004703 2.7e-123 446.8 441 56.9
Solyc02g067990.3 Solanum lycopersicum HOM05D003681 ORTHO05D004703 3.5e-123 446.4 599 47.4
FvH4_6g52640 Fragaria vesca HOM05D003681 ORTHO05D004703 1.0e-122 444.9 620 45.8
Dinv33384 Davidia involucrata HOM05D003681 ORTHO05D004703 1.3e-122 444.5 624 45.5
Sabra16G0218400 Salix brachista HOM05D003681 ORTHO05D004703 1.3e-122 444.5 603 47.1
Actinidia16950 Actinidia chinensis HOM05D003681 ORTHO05D004703 1.7e-122 444.1 620 45.6
MSTRG.3111 Avicennia marina HOM05D003681 ORTHO05D004703 1.7e-122 444.1 609 46.0
Psat1g082400 Pisum sativum HOM05D003681 ORTHO05D004703 3.0e-122 443.4 604 46.4
TWI12G0555 Tripterygium wilfordii HOM05D003681 ORTHO05D004703 6.6e-122 442.2 632 45.9
Sabra16G0218500 Salix brachista HOM05D003681 ORTHO05D004703 1.9e-121 440.7 631 45.3
Actinidia36165 Actinidia chinensis HOM05D003681 ORTHO05D004703 4.3e-121 439.5 604 46.0
Lalb_Chr21g0317601 Lupinus albus HOM05D003681 ORTHO05D004703 3.6e-120 436.4 590 46.6
Medtr6g022730 Medicago truncatula HOM05D003681 ORTHO05D004703 4.8e-120 436.0 602 45.7
FAN14G5093 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.1e-119 434.9 632 43.8
Haze_14813 Corylus avellana HOM05D003681 ORTHO05D004703 1.4e-119 434.5 691 42.5
Rhsim10G0011100 Rhododendron simsii HOM05D003681 ORTHO05D004703 1.8e-119 434.1 619 45.4
SGA_v2.0_scaffold135G34941 Striga asiatica HOM05D003681 ORTHO05D004703 9.0e-119 431.8 614 45.0
FAN09G4630 Fragaria x ananassa HOM05D003681 ORTHO05D004703 1.5e-118 431.0 626 44.2
Nitab4.5_0000040g0490 Nicotiana tabacum HOM05D003681 ORTHO05D004703 2.6e-118 430.3 615 45.4
ECA238G4183 Erigeron canadensis HOM05D003681 ORTHO05D004703 4.5e-118 429.5 582 46.9
FAN02G4174 Fragaria x ananassa HOM05D003681 ORTHO05D004703 2.9e-117 426.8 614 44.3
Nitab4.5_0008718g0020 Nicotiana tabacum HOM05D003681 ORTHO05D004703 1.1e-116 424.9 615 44.6
Oeu050433.3 Olea europaea HOM05D003681 ORTHO05D004703 1.1e-116 424.9 634 44.2
Sc03g0007020 Simmondsia chinensis HOM05D003681 ORTHO05D004703 1.9e-116 424.1 597 46.6
Lsat_1_v5_gn_2_93641 Lactuca sativa HOM05D003681 ORTHO05D004703 4.2e-116 422.9 591 46.4
Dinv25694 Davidia involucrata HOM05D003681 ORTHO05D004703 1.6e-115 421.0 618 44.3
FAN05G4404 Fragaria x ananassa HOM05D003681 ORTHO05D004703 6.0e-115 419.1 659 42.5
CDE07G0234 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 3.9e-114 416.4 597 45.7
Hma1.2p1_0279F.1_g112260 Hydrangea macrophylla HOM05D003681 ORTHO05D004703 1.1e-113 414.8 720 41.2
Oeu058755.3 Olea europaea HOM05D003681 ORTHO05D004703 1.9e-113 414.1 667 42.0
Peaxi162Scf00080g01724 Petunia axillaris HOM05D003681 ORTHO05D004703 1.3e-112 411.4 607 45.1
Rhsim08G0046300 Rhododendron simsii HOM05D003681 ORTHO05D004703 2.1e-112 410.6 617 43.4
Lj1g0019639 Lotus japonicus HOM05D003681 ORTHO05D004703 1.2e-107 394.8 648 42.1
TPR.G36528 Trifolium pratense HOM05D003681 ORTHO05D004703 6.7e-106 389.0 378 56.3
CDE04G2610 Ceratophyllum demersum HOM05D003681 ORTHO05D004703 2.6e-102 377.1 622 40.5
QL07p006188 Quercus lobata HOM05D003681 ORTHO05D004703 9.3e-92 342.0 378 52.9
SEGI_13919 Sequoiadendron giganteum HOM05D003681 ORTHO05D004703 2.1e-91 340.9 366 54.6
CBR_g66670 Chara braunii HOM05D003681 ORTHO05D004703 4.6e-91 339.7 567 40.4
unitig_744.g24365 Utricularia gibba HOM05D003681 ORTHO05D004703 4.1e-87 326.6 632 38.8
unitig_21.g20482 Utricularia gibba HOM05D003681 ORTHO05D004703 6.5e-85 319.3 650 37.1
SHI03860 Sapria himalayana HOM05D003681 ORTHO05D004703 3.6e-83 313.5 428 45.6
DCAR_011289 Daucus carota HOM05D003681 ORTHO05D004703 6.7e-82 309.3 538 40.9
AagrBONN_evm.TU.Sc2ySwM_228.437 Anthoceros agrestis HOM05D003681 ORTHO05D004703 1.2e-78 298.5 353 50.7
QL09p045970 Quercus lobata HOM05D003681 ORTHO05D004703 4.4e-65 253.4 305 50.5
SGA_v2.0_scaffold135G34947 Striga asiatica HOM05D003681 ORTHO05D004703 2.7e-54 217.6 257 49.8
SMO275G0043 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 3.5e-54 217.2 184 70.1
Nn3g16565 Nelumbo nucifera HOM05D003681 ORTHO05D004703 6.8e-50 203.0 183 61.2
Actinidia35791 Actinidia chinensis HOM05D003681 ORTHO05D004703 2.0e-49 201.4 290 44.8
RcHm_v2.0_Chr2g0109021 Rosa chinensis HOM05D002608 ORTHO05D004703 2.9e-32 144.4 250 37.2
SMO367G0834 Selaginella moellendorffii HOM05D003681 ORTHO05D030546 1.9e-28 131.7 193 50.3
TAR629G3339 Trochodendron aralioides HOM05D003681 ORTHO05D030546 1.9e-28 131.7 98 63.3
SMO275G0001 Selaginella moellendorffii HOM05D003681 ORTHO05D004703 4.9e-24 117.1 93 69.9
Lsat_1_v5_gn_3_79520 Lactuca sativa HOM05D003681 ORTHO05D004703 6.4e-24 116.7 175 40.6
MELO3C014854.2 Cucumis melo HOM05D003681 ORTHO05D004703 4.1e-23 114.0 270 35.2
RcHm_v2.0_Chr5g0047251 Rosa chinensis HOM05D002608 ORTHO05D021346 4.6e-22 110.5 416 28.6
RcHm_v2.0_Chr2g0166591 Rosa chinensis HOM05D003681 ORTHO05D004703 2.5e-20 104.8 78 73.1
RcHm_v2.0_Chr6g0248701 Rosa chinensis HOM05D002608 ORTHO05D013040 8.4e-16 89.7 83 51.8
RcHm_v2.0_Chr6g0248711 Rosa chinensis HOM05D003681 ORTHO05D030546 3.2e-15 87.8 50 78.0
BcaC05g26953 Brassica carinata HOM05D003681 ORTHO05D024003 2.3e-13 81.6 71 52.1
C05p28020 Brassica napus HOM05D003681 ORTHO05D024003 2.3e-13 81.6 71 52.1
SEGI_03694 Sequoiadendron giganteum HOM05D003681 ORTHO05D024003 5.1e-13 80.5 57 70.2
BolC5t31529H Brassica oleracea HOM05D003681 ORTHO05D024003 7.3e-12 76.6 65 53.8
RcHm_v2.0_Chr2g0096321 Rosa chinensis HOM05D003681 ORTHO05D004703 1.2e-11 75.9 76 47.4
RcHm_v2.0_Chr5g0045391 Rosa chinensis HOM05D003681 ORTHO05D004703 1.2e-11 75.9 76 47.4
Lsat_1_v5_gn_2_93681 Lactuca sativa HOM05D006130 ORTHO05D007491 6.2e-11 73.6 54 70.4
MBI06_g35146_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D004703 1.2e-09 69.3 249 31.7
MBI02_g11376_MAGBIO Magnolia biondii HOM05D003681 ORTHO05D024003 1.7e-08 65.5 57 57.9


User provided reference genes

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