Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 3900.5 2040 100.0
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1652.1 2319 42.8
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1647.1 2315 43.5
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1564.3 2385 41.0
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 1375.9 2234 39.0
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 1349.3 2276 38.6
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 1340.9 2194 39.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 1335.5 2273 38.9
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 1327.8 2246 38.0
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 1321.2 2280 38.3
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 1320.1 2213 38.3
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 1317.8 2273 37.8
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 1316.2 2230 37.9
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 1315.8 2255 38.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 1315.4 2261 38.1
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 1315.4 2233 37.5
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 1315.1 2331 37.6
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 1314.7 2236 37.9
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 1311.2 2230 38.0
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 1308.9 2259 38.2
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1308.5 2174 37.9
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 1308.5 2174 37.9
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 1308.5 2237 37.9
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 1303.9 2189 38.0
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 1302.7 2245 37.8
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1302.3 2264 37.7
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 1300.4 2282 38.6
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 1299.3 2179 38.0
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 1299.3 2179 38.0
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 1299.3 2249 37.0
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 1298.9 2187 37.8
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 1298.9 2264 37.4
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 1297.0 2217 38.0
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 1296.6 2257 37.4
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 1296.2 2258 37.7
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 1295.0 2273 38.4
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1293.9 2266 37.2
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 1292.7 2227 37.6
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 1292.7 2279 37.4
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 1290.0 2215 38.3
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1288.9 2267 37.4
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 1287.3 2266 37.6
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1286.6 2266 38.0
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 1286.6 2282 38.2
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 1285.8 2271 37.1
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 1284.2 2271 37.6
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1283.9 2252 37.4
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 1281.5 2188 37.9
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1281.5 2275 37.0
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1281.2 2247 37.7
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 1280.0 2255 36.9
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 1278.8 2247 37.6
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 1278.5 2265 38.0
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 1278.1 2160 38.3
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 1276.9 2186 37.8
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1276.5 2276 36.9
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 1275.8 2270 38.0
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 1275.0 2268 36.9
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 1274.2 2271 36.9
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 1273.1 2258 37.4
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 1272.3 2189 37.4
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 1271.1 2257 37.0
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 1270.8 2193 37.7
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 1270.8 2262 36.7
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 1270.8 2248 37.4
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1268.8 2250 37.8
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 1268.8 2264 37.4
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 1264.6 2264 37.2
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 1262.7 2290 36.9
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 1260.7 2181 37.3
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1260.4 2276 36.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 1255.7 2257 37.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 1255.4 2248 37.5
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1255.0 2273 36.6
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 1248.4 2271 36.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1243.0 2244 37.2
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 1239.2 2246 36.9
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1238.0 2247 37.1
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 1237.6 2267 36.4
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 1236.5 2260 36.7
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 1230.3 2249 36.3
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 1229.5 2257 36.5
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 1223.0 2165 37.0
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 1189.5 2021 38.2
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 1181.4 2237 36.7
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1176.4 2276 35.2
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 1137.5 1919 38.7
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 1105.9 1822 39.6
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 1087.0 1828 38.9
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 1086.6 1846 38.6
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 1.7e-307 1060.4 3311 28.7
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.4e-306 1056.6 1720 38.9
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 3.2e-298 1029.6 2337 32.2
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 5.1e-288 995.7 1677 38.0
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 1.3e-286 991.1 1458 42.2
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 1.0e-235 822.0 2140 30.8
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.9e-226 791.2 1357 39.3
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 2.3e-216 757.7 1321 37.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 1.0e-195 689.1 1152 38.4
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 6.6e-195 686.4 2142 28.2
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 2.5e-186 657.9 1043 39.0
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.9e-178 631.7 1199 36.1
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 1.5e-175 622.1 1359 33.5
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 1.1e-170 605.9 961 38.3
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 7.4e-162 576.6 968 38.2
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.2e-143 516.2 2579 26.0
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 2.3e-131 475.3 799 38.7
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 3.7e-129 468.0 746 39.3
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 8.8e-115 420.2 1010 32.6
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 3.3e-109 401.7 827 34.1
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 7.8e-79 300.8 916 28.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 4.5e-58 231.9 243 52.3
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.3e-57 230.3 520 34.8
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 1.3e-38 167.2 379 31.4
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 6.7e-38 164.9 389 29.0
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 3.1e-35 156.0 341 30.2
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 4.6e-31 142.1 262 36.3
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.0e-30 141.0 320 30.6
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.1e-30 138.7 296 34.8
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 3.3e-29 136.0 170 47.6
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 1.3e-25 124.0 99 63.6
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-25 123.2 251 31.5
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 5.0e-25 122.1 337 27.3
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 1.1e-24 120.9 138 44.9
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 6.1e-23 115.2 244 32.0
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 1.5e-16 94.0 119 45.4
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 1.0e-14 87.8 256 26.6
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-14 87.0 151 36.4
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 9.7e-13 81.3 98 42.9
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 1.1e-11 77.8 767 20.2
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 3.5e-10 72.8 92 46.7
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.4e-06 60.8 195 27.2


User provided reference genes

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