Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0757 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 7.6e-197 690.3 339 100.0
SEGI_18748 Sequoiadendron giganteum HOM05D004167 ORTHO05D005012 3.9e-116 422.2 290 67.6
Mapoly0005s0180 Marchantia polymorpha HOM05D004167 ORTHO05D005012 2.2e-111 406.4 298 65.8
Os03g0821800 Oryza sativa ssp. japonica HOM05D004167 ORTHO05D005012 1.2e-109 400.6 290 65.9
ATR0559G365 Amborella trichopoda HOM05D004167 ORTHO05D005012 4.6e-109 398.7 290 68.6
MBI14_g20108_MAGBIO Magnolia biondii HOM05D004167 ORTHO05D005012 4.6e-109 398.7 309 63.1
Pp3c6_19470 Physcomitrium patens HOM05D004167 ORTHO05D005012 1.3e-108 397.1 291 65.6
Zm00001eb062720 Zea mays HOM05D004167 ORTHO05D005012 2.3e-108 396.4 289 65.4
HPP92_020200 Vanilla planifolia HOM05D004167 ORTHO05D005012 3.6e-106 389.0 293 64.5
Sp4g21890 Schrenkiella parvula HOM05D004167 ORTHO05D005012 1.8e-105 386.7 306 61.1
BolC4t22416H Brassica oleracea HOM05D004167 ORTHO05D005012 2.4e-105 386.3 296 63.5
BcaC02g12089 Brassica carinata HOM05D004167 ORTHO05D005012 3.1e-105 386.0 292 63.4
C04p07990 Brassica napus HOM05D004167 ORTHO05D005012 8.9e-105 384.4 292 63.0
Ciclev10032053m.g Citrus clementina HOM05D004167 ORTHO05D005012 1.5e-104 383.6 291 64.3
BraA03t11449Z Brassica rapa HOM05D004167 ORTHO05D005012 2.0e-104 383.3 304 60.9
Thhalv10016901m.g Eutrema salsugineum HOM05D004167 ORTHO05D005012 2.6e-104 382.9 304 60.5
HanXRQChr14g0457931 Helianthus annuus HOM05D004167 ORTHO05D005012 2.6e-104 382.9 283 63.3
A05p06810 Brassica napus HOM05D004167 ORTHO05D005012 4.4e-104 382.1 295 62.4
Thecc.10G042500 Theobroma cacao HOM05D004167 ORTHO05D005012 7.6e-104 381.3 292 64.0
unitig_899.g15067 Utricularia gibba HOM05D004167 ORTHO05D005012 7.6e-104 381.3 305 62.3
Potri.008G055700 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.3e-103 380.6 291 64.6
MD07G1198100 Malus domestica HOM05D004167 ORTHO05D005012 1.7e-103 380.2 316 60.1
MSTRG.303 Avicennia marina HOM05D004167 ORTHO05D005012 2.9e-103 379.4 291 63.2
BraA05t19647Z Brassica rapa HOM05D004167 ORTHO05D005012 2.9e-103 379.4 295 62.0
Gorai.009G319400 Gossypium raimondii HOM05D004167 ORTHO05D005012 2.9e-103 379.4 292 63.7
Eucgr.G02933 Eucalyptus grandis HOM05D004167 ORTHO05D005012 3.8e-103 379.0 295 61.7
CANSAT56G0736 Cannabis sativa HOM05D004167 ORTHO05D005012 4.9e-103 378.6 291 62.9
Sed0007402 Sechium edule HOM05D004167 ORTHO05D005012 6.4e-103 378.3 288 63.9
THA.LOC104824275 Tarenaya hassleriana HOM05D004167 ORTHO05D005012 8.4e-103 377.9 304 60.2
CsaV3_5G026660 Cucumis sativus L. HOM05D004167 ORTHO05D005012 1.4e-102 377.1 287 64.1
Peaxi162Scf00015g01117 Petunia axillaris HOM05D004167 ORTHO05D005012 1.4e-102 377.1 292 62.7
Potri.010G204000 Populus trichocarpa HOM05D004167 ORTHO05D005012 1.4e-102 377.1 290 64.1
Nn2g10367 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.9e-102 376.7 291 62.9
Gohir.A05G301600 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.4e-102 376.3 292 63.4
Gohir.D05G301300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.4e-102 376.3 292 63.4
Oeu064382.1 Olea europaea HOM05D004167 ORTHO05D005012 2.4e-102 376.3 292 61.6
Lsat_1_v5_gn_9_65421 Lactuca sativa HOM05D004167 ORTHO05D005012 3.2e-102 375.9 283 63.6
CAN.G1013.26 Capsicum annuum HOM05D004167 ORTHO05D005012 4.2e-102 375.6 292 62.3
MELO3C021632.2 Cucumis melo HOM05D004167 ORTHO05D005012 4.2e-102 375.6 287 63.4
Aa31LG5G20010 Aethionema arabicum HOM05D004167 ORTHO05D005012 5.4e-102 375.2 304 59.9
Dinv03048 Davidia involucrata HOM05D004167 ORTHO05D005012 5.4e-102 375.2 287 63.8
ECA232G2013 Erigeron canadensis HOM05D004167 ORTHO05D005012 5.4e-102 375.2 284 64.1
Nitab4.5_0010256g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 5.4e-102 375.2 292 62.0
Carub.0004s2167 Capsella rubella HOM05D004167 ORTHO05D005012 7.1e-102 374.8 305 58.7
AT2G39630 Arabidopsis thaliana HOM05D004167 ORTHO05D005012 9.2e-102 374.4 305 59.0
Gorai.011G260700 Gossypium raimondii HOM05D004167 ORTHO05D005012 9.2e-102 374.4 291 62.2
Cc02_g07870 Coffea canephora HOM05D004167 ORTHO05D005012 1.2e-101 374.0 292 62.3
FAN10G4113 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.2e-101 374.0 294 62.2
Manes.07G116100 Manihot esculenta HOM05D004167 ORTHO05D005012 1.2e-101 374.0 293 62.1
CSS0037407 Camellia sinensis var. sinensis HOM05D004167 ORTHO05D005012 1.6e-101 373.6 287 64.1
FAN01G0242 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.6e-101 373.6 294 61.9
Prupe.2G235200 Prunus persica HOM05D004167 ORTHO05D005012 1.6e-101 373.6 316 58.5
Migut.F01510 Erythranthe guttata HOM05D004167 ORTHO05D005012 2.1e-101 373.2 289 63.0
Gohir.D10G228300 Gossypium hirsutum HOM05D004167 ORTHO05D005012 2.1e-101 373.2 291 62.2
PGR142G3800 Punica granatum HOM05D004167 ORTHO05D005012 3.5e-101 372.5 293 61.1
FAN01G1831 Fragaria x ananassa HOM05D004167 ORTHO05D005012 4.6e-101 372.1 298 61.7
MD01G1133900 Malus domestica HOM05D004167 ORTHO05D005012 4.6e-101 372.1 291 63.2
FvH4_7g22450 Fragaria vesca HOM05D004167 ORTHO05D005012 6.0e-101 371.7 287 62.0
FAN06G2439 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-101 371.7 287 62.0
FAN06G3201 Fragaria x ananassa HOM05D004167 ORTHO05D005012 6.0e-101 371.7 287 62.0
GSVIVG01016551001 Vitis vinifera HOM05D004167 ORTHO05D005012 7.8e-101 371.3 287 63.4
AL4G37040 Arabidopsis lyrata HOM05D004167 ORTHO05D005012 1.0e-100 370.9 305 58.4
CDE09G1012 Ceratophyllum demersum HOM05D004167 ORTHO05D005012 1.0e-100 370.9 288 62.5
FAN03G2888 Fragaria x ananassa HOM05D004167 ORTHO05D005012 1.3e-100 370.5 294 61.6
QL08p059807 Quercus lobata HOM05D004167 ORTHO05D005012 2.3e-100 369.8 291 61.9
ECA238G2661 Erigeron canadensis HOM05D004167 ORTHO05D005012 3.9e-100 369.0 283 62.2
PGSC0003DMG400023531 Solanum tuberosum HOM05D004167 ORTHO05D005012 3.9e-100 369.0 292 61.3
TAR623G0075 Trochodendron aralioides HOM05D004167 ORTHO05D005012 3.9e-100 369.0 302 59.9
Atru.chr12.475 Acer truncatum HOM05D004167 ORTHO05D005012 5.1e-100 368.6 291 62.2
Atru.chr12.453 Acer truncatum HOM05D004167 ORTHO05D005012 6.6e-100 368.2 291 62.2
EL10Ac2g04752 Beta vulgaris HOM05D004167 ORTHO05D005012 6.6e-100 368.2 282 64.5
Hund13759 Selenicereus undatus HOM05D004167 ORTHO05D005012 8.7e-100 367.9 283 62.9
SGA_v2.0_scaffold108G31010 Striga asiatica HOM05D004167 ORTHO05D005012 8.7e-100 367.9 289 61.9
AagrBONN_evm.TU.Sc2ySwM_117.3937 Anthoceros agrestis HOM05D004167 ORTHO05D005012 1.1e-99 367.5 299 60.5
Cfa001475 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.1e-99 367.5 289 61.6
PSO210G3999 Papaver somniferum HOM05D004167 ORTHO05D005012 1.1e-99 367.5 290 63.1
PSO210G2827 Papaver somniferum HOM05D004167 ORTHO05D005012 1.5e-99 367.1 300 61.7
SalBow6G7174 Salvia bowleyana HOM05D004167 ORTHO05D005012 2.5e-99 366.3 291 62.5
Sc11g0007950 Simmondsia chinensis HOM05D004167 ORTHO05D005012 2.5e-99 366.3 287 63.1
TWI15G0568 Tripterygium wilfordii HOM05D004167 ORTHO05D005012 2.5e-99 366.3 292 60.6
Aqoxy5G03379 Aquilegia oxysepala HOM05D004167 ORTHO05D005012 4.3e-99 365.5 292 61.0
RcHm_v2.0_Chr1g0367061 Rosa chinensis HOM05D004167 ORTHO05D005012 4.3e-99 365.5 291 60.8
Solyc05g054460.3 Solanum lycopersicum HOM05D004167 ORTHO05D005012 4.3e-99 365.5 292 61.0
Sopen05g032950 Solanum pennellii HOM05D004167 ORTHO05D005012 4.3e-99 365.5 292 61.0
BolC3t15010H Brassica oleracea HOM05D004167 ORTHO05D005012 7.3e-99 364.8 328 55.8
DCAR_011694 Daucus carota HOM05D004167 ORTHO05D005012 7.3e-99 364.8 284 62.0
Rhsim09G0165800 Rhododendron simsii HOM05D004167 ORTHO05D005012 7.3e-99 364.8 287 63.1
AUR62039381 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.2e-98 364.0 310 59.0
Ah.16g102290 Amaranthus hybridus HOM05D004167 ORTHO05D005012 1.6e-98 363.6 289 61.6
Duzib114G0485 Durio zibethinus HOM05D004167 ORTHO05D005012 3.6e-98 362.5 275 65.1
Ca_07311_v3 Cicer arietinum L. HOM05D004167 ORTHO05D005012 4.7e-98 362.1 292 61.6
Lj1g0019937 Lotus japonicus HOM05D004167 ORTHO05D005012 4.7e-98 362.1 291 60.1
VMungo1383G2822 Vigna mungo HOM05D004167 ORTHO05D005012 8.1e-98 361.3 291 59.8
arahy.Tifrunner.gnm1.ann1.A8V5RI Arachis hypogaea HOM05D004167 ORTHO05D005012 1.1e-97 360.9 291 60.8
arahy.Tifrunner.gnm1.ann1.TM884Y Arachis hypogaea HOM05D004167 ORTHO05D005012 1.1e-97 360.9 291 60.8
Lalb_Chr10g0091651 Lupinus albus HOM05D004167 ORTHO05D005012 1.1e-97 360.9 291 59.8
Sed0027549 Sechium edule HOM05D004167 ORTHO05D005012 1.1e-97 360.9 280 63.6
Cpa.g.sc1.403 Carica papaya HOM05D004167 ORTHO05D005012 1.4e-97 360.5 300 60.0
Phvul.008G010800 Phaseolus vulgaris HOM05D004167 ORTHO05D005012 1.4e-97 360.5 291 59.8
TPR.G1356 Trifolium pratense HOM05D004167 ORTHO05D005012 1.4e-97 360.5 289 61.2
Nn5g26919 Nelumbo nucifera HOM05D004167 ORTHO05D005012 1.8e-97 360.1 311 59.5
Duzib106G0246 Durio zibethinus HOM05D004167 ORTHO05D005012 6.9e-97 358.2 270 64.8
ClCG07G003290 Citrullus lanatus HOM05D004167 ORTHO05D005012 1.2e-96 357.5 288 59.7
Glyma.18G291100 Glycine max HOM05D004167 ORTHO05D005012 1.2e-96 357.5 291 59.8
Lsat_1_v5_gn_2_119101 Lactuca sativa HOM05D004167 ORTHO05D005012 2.6e-96 356.3 276 60.9
CiPaw.02G183800 Carya illinoinensis HOM05D004167 ORTHO05D005012 4.4e-96 355.5 287 59.9
Medtr7g026260 Medicago truncatula HOM05D004167 ORTHO05D005012 1.7e-95 353.6 288 60.8
CiPaw.01G287300 Carya illinoinensis HOM05D004167 ORTHO05D005012 3.8e-95 352.4 290 59.3
MELO3C023850.2 Cucumis melo HOM05D004167 ORTHO05D005012 6.4e-95 351.7 288 60.1
Pp3c3_37810 Physcomitrium patens HOM05D004167 ORTHO05D005012 8.4e-95 351.3 276 63.0
TAR633G1670 Trochodendron aralioides HOM05D004167 ORTHO05D005012 1.4e-94 350.5 260 65.4
Glyma.02G091700 Glycine max HOM05D004167 ORTHO05D005012 2.4e-94 349.7 291 58.4
AagrBONN_evm.TU.Sc2ySwM_344.1330 Anthoceros agrestis HOM05D004167 ORTHO05D005012 3.2e-94 349.4 261 65.5
Gohir.A10G218700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 5.4e-94 348.6 291 59.1
Sabra10G0157600 Salix brachista HOM05D004167 ORTHO05D005012 2.1e-90 336.7 304 57.6
Actinidia13047 Actinidia chinensis HOM05D004167 ORTHO05D005012 1.5e-88 330.5 248 66.1
BcaB02g09101 Brassica carinata HOM05D004167 ORTHO05D005012 5.8e-88 328.6 245 65.3
Sabra08G0040300 Salix brachista HOM05D004167 ORTHO05D005012 1.3e-87 327.4 285 59.6
ClCG09G019760 Citrullus lanatus HOM05D004167 ORTHO05D005012 2.3e-84 316.6 385 46.8
Dinv26013 Davidia involucrata HOM05D004167 ORTHO05D005012 3.0e-84 316.2 241 64.3
AUR62012082 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.1e-78 297.7 290 54.1
Oeu064381.1 Olea europaea HOM05D004167 ORTHO05D005012 1.9e-78 297.0 232 62.9
C03p26250 Brassica napus HOM05D004167 ORTHO05D005012 5.5e-78 295.4 243 60.5
Hund16089 Selenicereus undatus HOM05D004167 ORTHO05D005012 9.3e-78 294.7 230 63.9
Nitab4.5_0006489g0010 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.8e-76 290.4 230 62.6
Lj8A84T90 Lonicera japonica HOM05D004167 ORTHO05D005012 5.1e-76 288.9 229 61.6
Cre16.g652850 Chlamydomonas reinhardtii HOM05D004167 ORTHO05D005012 7.4e-75 285.0 300 50.7
CsaV3_5G008030 Cucumis sativus L. HOM05D004167 ORTHO05D005012 4.9e-71 272.3 223 61.4
TAR627G1156 Trochodendron aralioides HOM05D004167 ORTHO05D005012 2.5e-70 270.0 256 52.3
Actinidia13878 Actinidia chinensis HOM05D004167 ORTHO05D005012 3.9e-68 262.7 225 60.9
BcaC01g05486 Brassica carinata HOM05D004167 ORTHO05D005012 2.4e-65 253.4 181 68.5
CARHR134470 Cardamine hirsuta HOM05D004167 ORTHO05D005012 3.2e-62 243.0 184 64.1
SMO142G0075 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 5.5e-62 242.3 276 45.7
Manes.10G030400 Manihot esculenta HOM05D004167 ORTHO05D005012 2.7e-61 240.0 212 57.5
Gohir.A09G052700 Gossypium hirsutum HOM05D004167 ORTHO05D005012 3.6e-61 239.6 187 63.6
Haze_27280 Corylus avellana HOM05D004167 ORTHO05D005012 9.4e-54 214.9 280 43.6
PRCOL_00006983 Prasinoderma coloniale HOM05D004167 ORTHO05D005012 9.4e-54 214.9 291 41.9
TAR381G1570 Trochodendron aralioides HOM05D004167 ORTHO05D005012 6.1e-53 212.2 261 48.3
SMO142G0035 Selaginella moellendorffii HOM05D004167 ORTHO05D005012 1.5e-51 207.6 261 44.4
BraA02t07167Z Brassica rapa HOM05D004167 ORTHO05D005012 1.7e-50 204.1 180 58.9
Sed0025003 Sechium edule HOM05D004167 ORTHO05D005012 8.2e-50 201.8 182 55.5
Psat3g163360 Pisum sativum HOM05D004167 ORTHO05D005012 9.1e-49 198.4 182 56.6
Hma1.2p1_0683F.1_g202820 Hydrangea macrophylla HOM05D004167 ORTHO05D005012 6.1e-45 185.7 140 65.0
vmacro10234 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 3.0e-44 183.3 164 57.9
EL10Ac8g19589 Beta vulgaris HOM05D004167 ORTHO05D005012 5.7e-43 179.1 172 55.8
PSO079G0067 Papaver somniferum HOM05D004167 ORTHO05D005012 2.2e-42 177.2 168 53.6
AUR62014580 Chenopodium quinoa HOM05D004167 ORTHO05D005012 1.4e-41 174.5 160 55.6
vmacro10235 Vaccinium macrocarpon HOM05D004167 ORTHO05D005012 3.5e-40 169.9 109 71.6
CBR_g12000 Chara braunii HOM05D004167 ORTHO05D005012 3.8e-39 166.4 141 61.0
Cfa024819 Carpinus fangiana HOM05D004167 ORTHO05D005012 1.5e-35 154.5 289 33.6
EL10Ac2g03543 Beta vulgaris HOM05D004167 ORTHO05D005012 4.8e-34 149.4 198 46.0
MSTRG.8242 Avicennia marina HOM05D004167 ORTHO05D005012 1.2e-32 144.8 102 64.7
SHI22567 Sapria himalayana HOM05D004167 ORTHO05D005012 1.3e-31 141.4 120 64.2
BcaC01g05485 Brassica carinata HOM05D004167 ORTHO05D005012 2.6e-27 127.1 114 50.9
CARHR134480 Cardamine hirsuta HOM05D004167 ORTHO05D005012 7.5e-27 125.6 120 47.5
EL10Ac3g06649 Beta vulgaris HOM05D004167 ORTHO05D005012 7.7e-24 115.5 116 54.3
Nitab4.5_0000065g0040 Nicotiana tabacum HOM05D004167 ORTHO05D005012 1.6e-21 107.8 139 43.2
SHI22568 Sapria himalayana HOM05D004167 ORTHO05D005012 5.9e-16 89.4 74 56.8
arahy.Tifrunner.gnm1.ann1.I9KCKB Arachis hypogaea HOM05D001644 ORTHO05D001641 6.1e-13 79.3 142 40.1
EL10Ac5g11410 Beta vulgaris HOM05D004167 ORTHO05D005012 9.2e-09 65.5 98 43.9
Haze_27556 Corylus avellana HOM05D004063 ORTHO05D005326 1.6e-08 64.7 215 21.9
PRCOL_00004250 Prasinoderma coloniale HOM05D004063 ORTHO05D005326 7.8e-08 62.4 254 22.8
Solyc04g082390.3 Solanum lycopersicum HOM05D004063 ORTHO05D005326 1.9e-06 57.8 263 21.3
Sopen04g035990 Solanum pennellii HOM05D004063 ORTHO05D005326 1.9e-06 57.8 263 21.3
PGSC0003DMG400009980 Solanum tuberosum HOM05D004063 ORTHO05D005326 1.9e-06 57.8 263 21.3
Duzib116G0298 Durio zibethinus HOM05D004063 ORTHO05D005326 3.3e-06 57.0 246 21.1
CAN.G311.117 Capsicum annuum HOM05D004063 ORTHO05D005326 4.3e-06 56.6 256 20.7
Sabra05G0194100 Salix brachista HOM05D001348 ORTHO05D002788 4.3e-06 56.6 246 20.7
Potri.005G250900 Populus trichocarpa HOM05D004063 ORTHO05D005326 5.6e-06 56.2 246 20.3


User provided reference genes

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