Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0721 Selaginella moellendorffii HOM05D006367 ORTHO05D007942 2.4e-278 961.4 467 100.0
Pp3c8_810 Physcomitrium patens HOM05D006367 ORTHO05D007942 5.6e-150 535.0 465 57.0
AagrBONN_evm.TU.Sc2ySwM_344.2769 Anthoceros agrestis HOM05D006367 ORTHO05D007942 6.9e-148 528.1 449 56.8
Prupe.6G168900 Prunus persica HOM05D006367 ORTHO05D007942 6.9e-148 528.1 457 55.1
Thecc.01G115500 Theobroma cacao HOM05D006367 ORTHO05D007942 9.0e-148 527.7 457 55.6
Potri.005G085800 Populus trichocarpa HOM05D006367 ORTHO05D007942 2.0e-147 526.6 461 54.0
Manes.12G144300 Manihot esculenta HOM05D006367 ORTHO05D007942 2.6e-147 526.2 459 54.5
RcHm_v2.0_Chr2g0117401 Rosa chinensis HOM05D006367 ORTHO05D007942 5.8e-147 525.0 457 54.7
MD10G1028700 Malus domestica HOM05D006367 ORTHO05D007942 1.7e-146 523.5 471 53.5
Sabra05G0070700 Salix brachista HOM05D006367 ORTHO05D007942 2.2e-146 523.1 456 54.6
CANSAT21G2601 Cannabis sativa HOM05D006367 ORTHO05D007942 1.9e-145 520.0 456 54.8
MBI04_g33338_MAGBIO Magnolia biondii HOM05D006367 ORTHO05D007942 1.9e-145 520.0 461 54.0
FAN19G1918 Fragaria x ananassa HOM05D006367 ORTHO05D007942 2.5e-145 519.6 458 54.8
FAN26G2292 Fragaria x ananassa HOM05D006367 ORTHO05D007942 7.1e-145 518.1 458 54.1
QL06p031689 Quercus lobata HOM05D006367 ORTHO05D007942 7.1e-145 518.1 457 53.8
arahy.Tifrunner.gnm1.ann1.GSD986 Arachis hypogaea HOM05D006367 ORTHO05D007942 9.3e-145 517.7 472 52.8
Oeu028362.1 Olea europaea HOM05D006367 ORTHO05D007942 1.2e-144 517.3 466 53.6
Zm00001eb361490 Zea mays HOM05D006367 ORTHO05D007942 1.2e-144 517.3 462 53.7
TAR625G1249 Trochodendron aralioides HOM05D006367 ORTHO05D007942 1.6e-144 516.9 457 52.7
arahy.Tifrunner.gnm1.ann1.511U58 Arachis hypogaea HOM05D006367 ORTHO05D007942 2.1e-144 516.5 472 52.5
Haze_25063 Corylus avellana HOM05D006367 ORTHO05D007942 1.0e-143 514.2 461 54.7
Gorai.003G048000 Gossypium raimondii HOM05D006367 ORTHO05D007942 1.0e-143 514.2 457 54.7
Duzib187G0980 Durio zibethinus HOM05D006367 ORTHO05D007942 1.8e-143 513.5 459 54.2
VMungo0251G2542 Vigna mungo HOM05D006367 ORTHO05D007942 1.8e-143 513.5 463 54.0
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.3e-143 513.1 461 54.0
RcHm_v2.0_Chr2g0117461 Rosa chinensis HOM05D006367 ORTHO05D007942 3.0e-143 512.7 457 53.6
Cfa002770 Carpinus fangiana HOM05D006367 ORTHO05D007942 5.1e-143 511.9 461 54.4
Cc07_g16470 Coffea canephora HOM05D006367 ORTHO05D007942 6.7e-143 511.5 457 53.8
PGR004G1961 Punica granatum HOM05D006367 ORTHO05D007942 6.7e-143 511.5 460 53.5
Gohir.A02G136100 Gossypium hirsutum HOM05D006367 ORTHO05D007942 1.9e-142 510.0 457 54.0
Nn5g28853 Nelumbo nucifera HOM05D006367 ORTHO05D007942 1.9e-142 510.0 458 53.1
TWI75G1400 Tripterygium wilfordii HOM05D006367 ORTHO05D007942 2.5e-142 509.6 462 53.5
COL.COLO4_10985 Corchorus olitorius HOM05D006367 ORTHO05D007942 3.3e-142 509.2 457 54.0
SGA_v2.0_scaffold2G01287 Striga asiatica HOM05D006367 ORTHO05D007942 4.3e-142 508.8 474 53.4
FAN23G0352 Fragaria x ananassa HOM05D006367 ORTHO05D007942 5.7e-142 508.4 459 53.8
Os01g0716400 Oryza sativa ssp. japonica HOM05D006367 ORTHO05D007942 5.7e-142 508.4 456 53.7
Ciclev10025312m.g Citrus clementina HOM05D006367 ORTHO05D007942 7.4e-142 508.1 457 53.0
Aqoxy6G00434 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 9.6e-142 507.7 470 51.1
Atru.chr7.1822 Acer truncatum HOM05D006367 ORTHO05D007942 1.3e-141 507.3 458 53.1
Sopen04g022980 Solanum pennellii HOM05D006367 ORTHO05D007942 2.1e-141 506.5 458 53.3
MSTRG.23307 Avicennia marina HOM05D006367 ORTHO05D007942 2.8e-141 506.1 464 53.2
Solyc04g051610.3 Solanum lycopersicum HOM05D006367 ORTHO05D007942 2.8e-141 506.1 458 53.3
Sc14g0009250 Simmondsia chinensis HOM05D006367 ORTHO05D007942 1.8e-140 503.4 456 53.5
Hund02300 Selenicereus undatus HOM05D006367 ORTHO05D007942 3.1e-140 502.7 462 52.4
CiPaw.04G090000 Carya illinoinensis HOM05D006367 ORTHO05D007942 4.1e-140 502.3 462 52.4
PSO675G5206 Papaver somniferum HOM05D006367 ORTHO05D007942 5.3e-140 501.9 464 51.7
AT2G21860 Arabidopsis thaliana HOM05D006367 ORTHO05D007942 6.9e-140 501.5 466 52.1
BcaB06g27790 Brassica carinata HOM05D006367 ORTHO05D007942 3.4e-139 499.2 469 52.2
A04p16450 Brassica napus HOM05D006367 ORTHO05D007942 3.4e-139 499.2 461 52.9
CDE04G0187 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 3.4e-139 499.2 469 49.7
BraA04t17280Z Brassica rapa HOM05D006367 ORTHO05D007942 4.5e-139 498.8 461 52.9
Eucgr.I00312 Eucalyptus grandis HOM05D006367 ORTHO05D007942 4.5e-139 498.8 459 53.8
Nitab4.5_0000184g0160 Nicotiana tabacum HOM05D006367 ORTHO05D007942 7.6e-139 498.0 475 51.8
Carub.0004s0089 Capsella rubella HOM05D006367 ORTHO05D007942 1.0e-138 497.7 466 51.7
CARHR112860 Cardamine hirsuta HOM05D006367 ORTHO05D007942 1.0e-138 497.7 468 51.7
Nitab4.5_0009050g0050 Nicotiana tabacum HOM05D006367 ORTHO05D007942 1.0e-138 497.7 458 53.5
Thhalv10000126m.g Eutrema salsugineum HOM05D006367 ORTHO05D007942 1.7e-138 496.9 465 52.0
AL4G11170 Arabidopsis lyrata HOM05D006367 ORTHO05D007942 2.2e-138 496.5 466 51.1
BcaC02g08760 Brassica carinata HOM05D006367 ORTHO05D007942 3.8e-138 495.7 461 52.5
C04p50960 Brassica napus HOM05D006367 ORTHO05D007942 3.8e-138 495.7 461 52.5
THA.LOC104807726 Tarenaya hassleriana HOM05D006367 ORTHO05D007942 3.8e-138 495.7 466 51.5
CDE06G2209 Ceratophyllum demersum HOM05D006367 ORTHO05D007942 1.1e-137 494.2 433 54.0
Sp4g00950 Schrenkiella parvula HOM05D006367 ORTHO05D007942 1.1e-137 494.2 460 52.2
Dinv42673 Davidia involucrata HOM05D006367 ORTHO05D007942 1.4e-137 493.8 436 54.4
HanXRQChr03g0078741 Helianthus annuus HOM05D006367 ORTHO05D007942 5.5e-137 491.9 454 52.6
Aa31LG7G14760 Aethionema arabicum HOM05D006367 ORTHO05D007942 2.1e-136 490.0 461 51.8
Migut.H02447 Erythranthe guttata HOM05D006367 ORTHO05D007942 2.7e-136 489.6 461 51.4
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.6e-136 488.8 459 51.9
Psat7g050440 Pisum sativum HOM05D006367 ORTHO05D007942 4.6e-136 488.8 460 52.4
ClCG02G000950 Citrullus lanatus HOM05D006367 ORTHO05D007942 1.3e-135 487.3 459 51.6
ATR1120G154 Amborella trichopoda HOM05D006367 ORTHO05D007942 3.0e-135 486.1 458 50.4
ECA240G4594 Erigeron canadensis HOM05D006367 ORTHO05D007942 3.0e-135 486.1 453 51.4
Lsat_1_v5_gn_5_44981 Lactuca sativa HOM05D006367 ORTHO05D007942 5.1e-135 485.3 461 51.0
AUR62039784 Chenopodium quinoa HOM05D006367 ORTHO05D007942 2.5e-134 483.0 439 52.6
SalBow6G4439 Salvia bowleyana HOM05D006367 ORTHO05D007942 4.3e-134 482.3 464 51.5
Lalb_Chr07g0184731 Lupinus albus HOM05D006367 ORTHO05D007942 1.3e-133 480.7 463 51.0
Glyma.05G184900 Glycine max HOM05D006367 ORTHO05D007942 2.2e-133 479.9 458 51.7
TPR.G2178 Trifolium pratense HOM05D006367 ORTHO05D007942 4.8e-133 478.8 458 51.3
MELO3C034581.2 Cucumis melo HOM05D006367 ORTHO05D007942 8.2e-133 478.0 460 50.9
Lj4g0025161 Lotus japonicus HOM05D006367 ORTHO05D007942 8.2e-133 478.0 463 51.0
MELO3C020965.2 Cucumis melo HOM05D006367 ORTHO05D007942 1.1e-132 477.6 460 50.7
RcHm_v2.0_Chr2g0117441 Rosa chinensis HOM05D006367 ORTHO05D007942 1.8e-132 476.9 419 54.7
Hma1.2p1_0696F.1_g204660 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 5.3e-132 475.3 431 54.3
CSS0012231 Camellia sinensis var. sinensis HOM05D006367 ORTHO05D007942 1.2e-131 474.2 420 53.3
CsaV3_2G017740 Cucumis sativus L. HOM05D006367 ORTHO05D007942 1.5e-131 473.8 460 50.7
Medtr8g092050 Medicago truncatula HOM05D006367 ORTHO05D007942 1.5e-131 473.8 460 50.0
CARHR112850 Cardamine hirsuta HOM05D006367 ORTHO05D007942 2.0e-131 473.4 467 49.5
FvH4_1g22940 Fragaria vesca HOM05D006367 ORTHO05D007942 1.3e-130 470.7 420 54.8
Rhsim10G0148300 Rhododendron simsii HOM05D006367 ORTHO05D007942 8.5e-130 468.0 413 53.3
CAN.G1044.2 Capsicum annuum HOM05D006367 ORTHO05D007942 1.9e-129 466.8 456 52.0
Ca_17687_v3 Cicer arietinum L. HOM05D006367 ORTHO05D007942 7.2e-129 464.9 458 50.4
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 1.4e-127 460.7 431 50.3
CBR_g8843 Chara braunii HOM05D006367 ORTHO05D007942 6.7e-127 458.4 513 48.3
Sed0027379 Sechium edule HOM05D006367 ORTHO05D007942 2.0e-126 456.8 421 53.2
DCAR_011462 Daucus carota HOM05D006367 ORTHO05D007942 1.4e-121 440.7 458 48.5
Lj4P863T60 Lonicera japonica HOM05D006367 ORTHO05D007942 3.2e-121 439.5 417 52.3
Cc04_g11230 Coffea canephora HOM05D006367 ORTHO05D007942 1.1e-116 424.5 383 52.2
Actinidia05379 Actinidia chinensis HOM05D006367 ORTHO05D007942 3.8e-114 416.0 419 48.4
Gohir.D03G046900 Gossypium hirsutum HOM05D006367 ORTHO05D007942 3.8e-114 416.0 347 57.3
Cre09.g388060 Chlamydomonas reinhardtii HOM05D006367 ORTHO05D007942 5.7e-102 375.6 464 44.2
AagrBONN_evm.TU.Sc2ySwM_344.1355 Anthoceros agrestis HOM05D006367 ORTHO05D007942 5.0e-98 362.5 436 42.2
MCO11G553 Micromonas commoda HOM05D006367 ORTHO05D007942 9.8e-94 348.2 455 42.0
Phvul.002G265800 Phaseolus vulgaris HOM05D006367 ORTHO05D007942 1.6e-88 330.9 341 47.8
Nitab4.5_0005102g0010 Nicotiana tabacum HOM05D006367 ORTHO05D007942 6.1e-88 328.9 482 39.8
PGSC0003DMG400020963 Solanum tuberosum HOM05D006367 ORTHO05D007942 3.3e-81 306.6 419 40.3
PRCOL_00006729 Prasinoderma coloniale HOM05D006367 ORTHO05D007942 1.4e-76 291.2 476 37.4
Peaxi162Scf00106g01216 Petunia axillaris HOM05D006367 ORTHO05D007942 6.6e-74 282.3 415 38.1
PGSC0003DMG400023291 Solanum tuberosum HOM05D006367 ORTHO05D007942 4.3e-73 279.6 292 46.6
PGSC0003DMG400031203 Solanum tuberosum HOM05D006367 ORTHO05D007942 1.2e-70 271.6 198 62.1
Eucgr.L02754 Eucalyptus grandis HOM05D006367 ORTHO05D007942 1.4e-63 248.1 298 44.0
Glyma.08G142950 Glycine max HOM05D006367 ORTHO05D007942 5.4e-60 236.1 161 66.5
unitig_899.g14612 Utricularia gibba HOM05D006367 ORTHO05D007942 2.2e-53 214.2 233 45.9
Aqoxy4G01385 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 4.6e-51 206.5 148 64.2
Aqoxy4G01201 Aquilegia oxysepala HOM05D006367 ORTHO05D007942 6.0e-51 206.1 148 63.5
HPP92_027992 Vanilla planifolia HOM05D006367 ORTHO05D007942 2.7e-43 180.6 213 43.7
Hma1.2p1_0696F.1_g204650 Hydrangea macrophylla HOM05D006367 ORTHO05D007942 2.1e-40 171.0 200 43.5
Glyma.08G142900 Glycine max HOM05D006367 ORTHO05D007942 3.3e-33 147.1 221 37.1
PGSC0003DMG400004546 Solanum tuberosum HOM05D006367 ORTHO05D007942 9.0e-15 85.9 85 51.8
GSVIVG01022252001 Vitis vinifera HOM05D006367 ORTHO05D007942 1.5e-14 85.1 106 36.8
vmacro12891 Vaccinium macrocarpon HOM05D006367 ORTHO05D007942 1.5e-09 68.6 72 45.8
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 1.4e-07 62.0 52 51.9
Haze_08452 Corylus avellana HOM05D014029 ORTHO05D044818 1.5e-06 58.5 67 46.3
arahy.Tifrunner.gnm1.ann1.ZGZX3T Arachis hypogaea HOM05D006573 ORTHO05D008073 2.0e-06 58.2 273 20.9
Ca_09476_v3 Cicer arietinum L. HOM05D006573 ORTHO05D008073 4.5e-06 57.0 239 20.9


User provided reference genes

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