Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0645 Selaginella moellendorffii HOM05D003570 ORTHO05D004207 0.0e+00 1288.9 720 100.0
Pp3c9_21420 Physcomitrium patens HOM05D003570 ORTHO05D004207 9.4e-96 355.5 620 40.3
Mapoly0004s0250 Marchantia polymorpha HOM05D003570 ORTHO05D004207 3.0e-94 350.5 638 41.5
SEGI_05718 Sequoiadendron giganteum HOM05D003570 ORTHO05D004207 7.8e-82 309.3 618 41.1
CBR_g38118 Chara braunii HOM05D003570 ORTHO05D004207 1.2e-69 268.9 727 32.6
Gohir.D04G180400 Gossypium hirsutum HOM05D003570 ORTHO05D004207 2.1e-66 258.1 643 33.4
Gohir.A04G137200 Gossypium hirsutum HOM05D003570 ORTHO05D004207 3.3e-64 250.8 645 34.0
Gorai.012G173500 Gossypium raimondii HOM05D003570 ORTHO05D004207 1.6e-63 248.4 643 33.7
COL.COLO4_23499 Corchorus olitorius HOM05D003570 ORTHO05D004207 2.1e-63 248.1 655 31.0
RcHm_v2.0_Chr4g0432651 Rosa chinensis HOM05D003570 ORTHO05D004207 1.1e-62 245.7 617 33.7
FAN07G1326 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.3e-62 244.6 651 32.0
FAN22G0389 Fragaria x ananassa HOM05D003570 ORTHO05D004207 8.9e-62 242.7 617 32.6
FAN12G2286 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.2e-61 242.3 621 32.0
Thecc.02G265200 Theobroma cacao HOM05D003570 ORTHO05D004207 1.5e-61 241.9 649 30.2
FvH4_4g25360 Fragaria vesca HOM05D003570 ORTHO05D004207 8.3e-60 236.1 622 32.0
Duzib248G0757 Durio zibethinus HOM05D003570 ORTHO05D004207 4.1e-59 233.8 658 30.5
Nn4g22548 Nelumbo nucifera HOM05D003570 ORTHO05D004207 4.1e-59 233.8 656 30.6
arahy.Tifrunner.gnm1.ann1.I1BHDP Arachis hypogaea HOM05D003570 ORTHO05D004207 7.1e-59 233.0 643 31.4
arahy.Tifrunner.gnm1.ann1.8897EQ Arachis hypogaea HOM05D003570 ORTHO05D004207 2.1e-58 231.5 642 31.3
Ca_25131_v3 Cicer arietinum L. HOM05D001269 ORTHO05D001083 2.1e-58 231.5 643 33.3
VMungo1383G2895 Vigna mungo HOM05D003570 ORTHO05D004207 2.1e-58 231.5 642 33.3
Ciclev10030923m.g Citrus clementina HOM05D003570 ORTHO05D004207 6.0e-58 229.9 658 32.4
Glyma.11G244100 Glycine max HOM05D003570 ORTHO05D004207 6.0e-58 229.9 640 34.2
Prupe.1G241900 Prunus persica HOM05D003570 ORTHO05D004207 3.9e-57 227.3 650 29.2
Phvul.001G256000 Phaseolus vulgaris HOM05D003570 ORTHO05D004207 5.1e-57 226.9 648 29.3
Eucgr.B03244 Eucalyptus grandis HOM05D003570 ORTHO05D004207 6.6e-57 226.5 646 28.3
TWI36G1196 Tripterygium wilfordii HOM05D003570 ORTHO05D004207 5.6e-56 223.4 647 31.4
Psat5g092360 Pisum sativum HOM05D003570 ORTHO05D004207 7.3e-56 223.0 641 32.0
Manes.13G020900 Manihot esculenta HOM05D003570 ORTHO05D004207 1.6e-55 221.9 643 30.0
Haze_12279 Corylus avellana HOM05D003570 ORTHO05D004207 2.1e-55 221.5 652 32.4
CANSAT11G1164 Cannabis sativa HOM05D003570 ORTHO05D004207 2.8e-55 221.1 677 30.4
PSO339G2835 Papaver somniferum HOM05D003570 ORTHO05D004207 1.1e-54 219.2 646 31.1
Potri.008G183500 Populus trichocarpa HOM05D003570 ORTHO05D004207 1.1e-54 219.2 659 29.6
Nitab4.5_0004117g0010 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.4e-54 218.8 608 31.1
TAR622G0746 Trochodendron aralioides HOM05D003570 ORTHO05D004207 1.8e-54 218.4 659 29.0
FAN17G0862 Fragaria x ananassa HOM05D003570 ORTHO05D004207 3.1e-54 217.6 633 29.4
QL03p056574 Quercus lobata HOM05D003570 ORTHO05D004207 5.2e-54 216.9 636 31.6
Sc04g0009680 Simmondsia chinensis HOM05D003570 ORTHO05D004207 6.8e-54 216.5 634 31.4
DCAR_026498 Daucus carota HOM05D003570 ORTHO05D004207 1.5e-53 215.3 650 31.2
PSO063G4933 Papaver somniferum HOM05D003570 ORTHO05D004207 2.6e-53 214.5 650 29.5
CiPaw.06G064800 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.4e-53 214.2 644 32.5
ATR0824G009 Amborella trichopoda HOM05D003570 ORTHO05D004207 5.8e-53 213.4 637 30.1
CsaV3_5G030790 Cucumis sativus L. HOM05D003570 ORTHO05D004207 5.8e-53 213.4 632 30.5
AUR62024231 Chenopodium quinoa HOM05D003570 ORTHO05D004207 7.6e-53 213.0 647 30.0
Nitab4.5_0002373g0110 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.6e-53 213.0 633 29.5
Actinidia37450 Actinidia chinensis HOM05D003570 ORTHO05D004207 1.7e-52 211.8 662 29.8
MBI04_g13681_MAGBIO Magnolia biondii HOM05D003570 ORTHO05D004207 2.2e-52 211.5 632 30.1
Lalb_Chr08g0230861 Lupinus albus HOM05D003570 ORTHO05D004207 1.4e-51 208.8 491 36.0
TPR.G35967 Trifolium pratense HOM05D003570 ORTHO05D004207 1.9e-51 208.4 497 36.0
Medtr3g086460 Medicago truncatula HOM05D003570 ORTHO05D004207 4.2e-51 207.2 648 32.3
Sed0006332 Sechium edule HOM05D003570 ORTHO05D004207 4.2e-51 207.2 595 29.9
Cpa.g.sc13.88 Carica papaya HOM05D003570 ORTHO05D004207 7.1e-51 206.5 689 30.2
Lj6A815G40 Lonicera japonica HOM05D003570 ORTHO05D004207 7.1e-51 206.5 451 36.6
PGR102G1250 Punica granatum HOM05D003570 ORTHO05D004207 1.6e-50 205.3 642 31.8
HanXRQChr08g0208421 Helianthus annuus HOM05D003570 ORTHO05D004207 6.0e-50 203.4 620 32.4
Lj4g0018208 Lotus japonicus HOM05D003570 ORTHO05D004207 1.7e-49 201.8 644 30.6
ECA233G5166 Erigeron canadensis HOM05D002671 ORTHO05D002985 3.0e-49 201.1 473 37.0
MD13G1104500 Malus domestica HOM05D003570 ORTHO05D004207 5.1e-49 200.3 492 35.4
MELO3C011924.2 Cucumis melo HOM05D003570 ORTHO05D004207 6.6e-49 199.9 654 29.4
Peaxi162Scf00128g00550 Petunia axillaris HOM05D003570 ORTHO05D004207 1.9e-48 198.4 617 32.3
COL.COLO4_27904 Corchorus olitorius HOM05D003570 ORTHO05D004207 4.3e-48 197.2 633 28.1
PSO063G3251 Papaver somniferum HOM05D003570 ORTHO05D004207 7.3e-48 196.4 620 29.0
THA.LOC104805269 Tarenaya hassleriana HOM05D003570 ORTHO05D004207 7.3e-48 196.4 619 32.0
CAN.G1572.8 Capsicum annuum HOM05D003570 ORTHO05D004207 9.6e-48 196.1 629 31.5
SGA_v2.0_scaffold22G09799 Striga asiatica HOM05D003570 ORTHO05D004207 1.6e-47 195.3 628 29.1
ClCG05G026050 Citrullus lanatus HOM05D003570 ORTHO05D004207 3.6e-47 194.1 639 30.2
AUR62005511 Chenopodium quinoa HOM05D003570 ORTHO05D004207 1.8e-46 191.8 472 32.4
Lj6g0027950 Lotus japonicus HOM05D003570 ORTHO05D004207 6.9e-46 189.9 656 31.1
QL03p056953 Quercus lobata HOM05D003570 ORTHO05D004207 1.2e-45 189.1 620 32.4
Sopen05g008710 Solanum pennellii HOM05D003570 ORTHO05D004207 2.6e-45 188.0 622 28.1
Lsat_1_v5_gn_0_32260 Lactuca sativa HOM05D003570 ORTHO05D004207 7.6e-45 186.4 643 29.1
GSVIVG01000572001 Vitis vinifera HOM05D003570 ORTHO05D004207 2.2e-44 184.9 659 27.8
Migut.K00625 Erythranthe guttata HOM05D003570 ORTHO05D004207 2.9e-44 184.5 639 29.3
Aqoxy7G03799 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 3.8e-44 184.1 631 30.6
MSTRG.553 Avicennia marina HOM05D003570 ORTHO05D004207 2.4e-43 181.4 629 30.7
PSO063G1535 Papaver somniferum HOM05D003570 ORTHO05D004207 2.7e-42 177.9 319 33.9
Atru.chr11.2174 Acer truncatum HOM05D003570 ORTHO05D004207 3.9e-41 174.1 655 29.3
Cc11_g16040 Coffea canephora HOM05D003570 ORTHO05D004207 3.9e-41 174.1 622 30.2
PSO754G0035 Papaver somniferum HOM05D003570 ORTHO05D004207 1.9e-40 171.8 312 33.7
Lj3A151T25 Lonicera japonica HOM05D003570 ORTHO05D004207 5.6e-40 170.2 293 35.2
AagrBONN_evm.TU.Sc2ySwM_344.4464 Anthoceros agrestis HOM05D003570 ORTHO05D004207 7.3e-40 169.9 466 37.6
Os02g0596100 Oryza sativa ssp. japonica HOM05D003570 ORTHO05D004207 1.3e-39 169.1 629 29.9
EL10As2g23162 Beta vulgaris HOM05D003570 ORTHO05D004207 1.4e-38 165.6 491 28.7
Oeu038645.2 Olea europaea HOM05D003570 ORTHO05D004207 1.8e-38 165.2 667 30.0
BraA09t41684Z Brassica rapa HOM05D003570 ORTHO05D004207 6.9e-38 163.3 633 29.9
Hma1.2p1_1533F.1_g289360 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 6.9e-38 163.3 272 36.0
AL1G24790 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.5e-37 162.2 613 29.4
AagrBONN_evm.TU.Sc2ySwM_362.2178 Anthoceros agrestis HOM05D003570 ORTHO05D004207 2.0e-37 161.8 175 47.4
Nitab4.5_0001978g0070 Nicotiana tabacum HOM05D003570 ORTHO05D004207 2.6e-37 161.4 684 26.2
Sabra08G0139700 Salix brachista HOM05D003570 ORTHO05D004207 3.4e-37 161.0 332 32.5
BolC8t52217H Brassica oleracea HOM05D003570 ORTHO05D004207 2.2e-36 158.3 627 29.7
Oeu038646.1 Olea europaea HOM05D003570 ORTHO05D004207 8.4e-36 156.4 419 32.5
Zm00001eb062020 Zea mays HOM05D003570 ORTHO05D004207 1.1e-35 156.0 502 29.3
BcaC07g41664 Brassica carinata HOM05D003570 ORTHO05D004207 1.9e-35 155.2 658 28.0
Zm00001eb212370 Zea mays HOM05D003570 ORTHO05D004207 1.9e-35 155.2 483 32.1
Aqoxy5G03688 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 4.2e-35 154.1 243 35.8
PGSC0003DMG400016968 Solanum tuberosum HOM05D003570 ORTHO05D004207 2.7e-34 151.4 250 34.8
Carub.0001s1286 Capsella rubella HOM05D003570 ORTHO05D004207 3.5e-34 151.0 628 29.6
CDE06G1553 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 7.9e-34 149.8 182 44.0
Dinv15203 Davidia involucrata HOM05D003570 ORTHO05D004207 1.3e-33 149.1 191 42.4
MCO05G059 Micromonas commoda HOM05D003570 ORTHO05D004207 1.3e-33 149.1 311 28.6
vmacro16171 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 3.9e-33 147.5 228 38.2
Rhsim12G0108000 Rhododendron simsii HOM05D003570 ORTHO05D004207 5.1e-33 147.1 265 35.1
Sp1g11650 Schrenkiella parvula HOM05D003570 ORTHO05D004207 6.7e-33 146.7 637 28.4
AT1G13120 Arabidopsis thaliana HOM05D003570 ORTHO05D004207 8.7e-33 146.4 616 27.8
C08p46780 Brassica napus HOM05D003570 ORTHO05D004207 4.3e-32 144.1 657 28.5
CARHR013490 Cardamine hirsuta HOM05D003570 ORTHO05D004207 3.1e-30 137.9 628 28.7
A09p63350 Brassica napus HOM05D003570 ORTHO05D004207 4.0e-30 137.5 630 27.3
Aqoxy1G03220 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 5.3e-30 137.1 254 35.0
vmacro17618 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 5.3e-30 137.1 508 30.5
SHI04269 Sapria himalayana HOM05D003570 ORTHO05D004207 1.2e-29 136.0 549 27.9
PRCOL_00001147 Prasinoderma coloniale HOM05D003570 ORTHO05D004207 1.4e-27 129.0 295 31.9
vmacro16173 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 1.4e-27 129.0 239 33.9
Thhalv10007079m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 2.3e-25 121.7 632 26.9
Cre06.g300900 Chlamydomonas reinhardtii HOM05D003570 ORTHO05D004207 1.1e-24 119.4 305 29.5
unitig_22.g6426 Utricularia gibba HOM05D003570 ORTHO05D004207 1.5e-24 119.0 186 36.6
CSS0045431 Camellia sinensis var. sinensis HOM05D003570 ORTHO05D004207 4.3e-24 117.5 153 41.8
Haze_11814 Corylus avellana HOM05D001314 ORTHO05D001165 2.8e-23 114.8 192 33.9
Aa31LG1G1680 Aethionema arabicum HOM05D003570 ORTHO05D004207 9.0e-22 109.8 632 26.9
Haze_20779 Corylus avellana HOM05D003570 ORTHO05D004207 3.4e-21 107.8 139 41.7
CiPaw.02G032100 Carya illinoinensis HOM05D003570 ORTHO05D004207 3.8e-20 104.4 646 26.6
FAN08G0154 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.3e-17 95.9 476 30.9
AL6G47680 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 3.3e-16 91.3 455 25.5
Sopen04g013730 Solanum pennellii HOM05D003570 ORTHO05D004207 4.3e-16 90.9 115 41.7
Thhalv10001133m.g Eutrema salsugineum HOM05D003570 ORTHO05D004207 7.4e-16 90.1 484 24.0
EL10Ac8g19584 Beta vulgaris HOM05D003570 ORTHO05D004207 9.0e-14 83.2 125 36.0
AL2G22720 Arabidopsis lyrata HOM05D003570 ORTHO05D004207 1.1e-11 76.3 145 39.3
Dinv11043 Davidia involucrata HOM05D003570 ORTHO05D004207 2.5e-11 75.1 464 26.1
Hma1.2p1_0054F.1_g030990 Hydrangea macrophylla HOM05D003570 ORTHO05D004207 4.2e-11 74.3 101 40.6
vmacro16170 Vaccinium macrocarpon HOM05D003570 ORTHO05D004207 9.4e-11 73.2 235 31.1
FvH4_5g15750 Fragaria vesca HOM05D003570 ORTHO05D004207 7.9e-10 70.1 60 51.7
Nitab4.5_0000229g0020 Nicotiana tabacum HOM05D003570 ORTHO05D004207 7.9e-10 70.1 241 28.6
FAN13G1935 Fragaria x ananassa HOM05D003570 ORTHO05D004207 1.4e-09 69.3 389 30.1
Nitab4.5_0000229g0040 Nicotiana tabacum HOM05D003570 ORTHO05D004207 1.8e-09 68.9 286 30.1
Rhsim12G0107900 Rhododendron simsii HOM05D003570 ORTHO05D004207 2.3e-09 68.6 272 31.2
Medtr7g034350 Medicago truncatula HOM05D003570 ORTHO05D004207 2.0e-08 65.5 184 25.0
Glyma.18G013000 Glycine max HOM05D003570 ORTHO05D004207 3.3e-08 64.7 77 37.7
Aqoxy5G03687 Aquilegia oxysepala HOM05D003570 ORTHO05D004207 1.3e-07 62.8 96 43.8
FAN08G3485 Fragaria x ananassa HOM05D003570 ORTHO05D004207 2.2e-07 62.0 103 31.1
CDE06G0651 Ceratophyllum demersum HOM05D003570 ORTHO05D004207 1.4e-06 59.3 251 27.9


User provided reference genes

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