Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 2.8e-146 521.9 261 100.0
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 1.3e-132 476.5 261 87.4
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.1e-132 474.6 261 87.7
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 2.1e-130 469.2 261 86.2
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 86.6
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.6e-130 468.4 261 87.0
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.2e-130 467.6 261 87.0
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.1e-129 466.8 261 86.2
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 1.4e-129 466.5 261 86.2
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 85.8
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 86.6
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 1.8e-129 466.1 261 85.8
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 3.1e-129 465.3 260 86.2
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 5.2e-129 464.5 261 85.1
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 85.4
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 86.2
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 6.8e-129 464.2 261 85.4
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 85.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 85.1
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 8.9e-129 463.8 261 85.1
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 85.8
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.2e-128 463.4 261 85.8
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 1.5e-128 463.0 261 85.8
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 1.5e-128 463.0 260 86.2
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 85.4
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 85.8
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 2.0e-128 462.6 261 85.8
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 85.8
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 84.7
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 84.7
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.6e-128 462.2 261 84.7
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.8
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 3.4e-128 461.8 261 85.8
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 4.4e-128 461.5 261 85.4
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 5.8e-128 461.1 261 85.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 7.6e-128 460.7 261 85.1
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 7.6e-128 460.7 260 85.8
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 85.8
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 9.9e-128 460.3 261 84.3
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 84.3
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 84.7
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 85.8
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 84.3
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 85.4
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 1.7e-127 459.5 261 84.7
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.4
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 2.2e-127 459.1 261 85.4
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 2.9e-127 458.8 258 86.4
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 84.7
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 2.9e-127 458.8 261 84.7
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 3.7e-127 458.4 260 85.0
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 84.7
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 3.7e-127 458.4 261 84.7
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 84.7
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 4.9e-127 458.0 261 84.3
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 4.9e-127 458.0 260 84.2
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 4.9e-127 458.0 265 84.5
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 6.4e-127 457.6 261 85.8
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 83.5
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 83.9
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.1e-126 456.8 261 83.9
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.9e-126 456.1 261 83.5
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 2.4e-126 455.7 260 84.6
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.2e-126 455.3 261 84.7
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 83.1
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 83.5
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 5.4e-126 454.5 261 84.3
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 84.3
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 84.7
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.1
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 85.1
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 7.1e-126 454.1 261 83.9
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 83.9
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 83.5
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 9.2e-126 453.8 269 82.9
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 9.2e-126 453.8 261 83.5
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 1.2e-125 453.4 261 83.5
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 84.3
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 1.6e-125 453.0 261 83.5
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 2.1e-125 452.6 261 83.1
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 3.5e-125 451.8 259 84.9
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 6.0e-125 451.1 261 83.5
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 6.0e-125 451.1 256 84.4
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 1.0e-124 450.3 261 83.1
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 2.3e-124 449.1 261 82.8
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 3.0e-124 448.7 261 83.1
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 5.1e-124 448.0 261 82.8
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 83.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 6.6e-124 447.6 261 82.8
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 8.6e-124 447.2 261 82.8
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 1.5e-123 446.4 260 83.5
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.1
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 82.4
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 1.9e-123 446.0 261 83.5
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 83.5
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 2.5e-123 445.7 260 83.5
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 2.5e-123 445.7 260 83.5
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.5e-123 445.7 264 83.0
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.4
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 2.5e-123 445.7 261 82.4
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 83.1
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 83.1
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 3.3e-123 445.3 261 82.4
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 82.8
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 5.6e-123 444.5 261 83.1
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 7.3e-123 444.1 261 82.8
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.2e-122 443.4 261 81.6
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 2.1e-122 442.6 259 83.4
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 2.1e-122 442.6 259 83.4
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.1e-122 442.6 261 83.1
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.1e-122 442.6 277 78.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 3.6e-122 441.8 285 77.5
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 4.7e-122 441.4 260 82.7
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 82.4
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 6.2e-122 441.0 261 80.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 8.1e-122 440.7 261 82.4
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 1.1e-121 440.3 261 80.5
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 2.4e-121 439.1 261 82.4
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 5.2e-121 438.0 261 82.0
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 2.0e-120 436.0 261 80.8
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 5.8e-120 434.5 261 80.8
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 8.4e-119 430.6 261 80.1
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 1.9e-118 429.5 261 80.8
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 5.4e-118 427.9 261 79.7
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 7.1e-118 427.6 256 80.5
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.2e-117 426.8 240 85.8
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 80.5
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 3.5e-117 425.2 261 77.4
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.3e-116 423.3 241 84.2
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.9e-116 421.8 241 83.8
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 5.1e-116 421.4 261 79.7
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 1.9e-115 419.5 261 78.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 7.3e-115 417.5 261 77.0
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.8e-113 412.9 277 75.5
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 3.4e-112 408.7 261 76.6
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 2.9e-111 405.6 261 77.4
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 2.9e-111 405.6 261 77.4
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 6.4e-111 404.4 266 76.3
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 7.9e-109 397.5 261 77.0
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.7e-108 396.4 261 76.2
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 1.5e-104 383.3 213 86.4
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 2.2e-103 379.4 337 59.6
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 7.1e-102 374.4 261 72.8
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 7.9e-101 370.9 309 65.0
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 2.3e-100 369.4 222 80.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 2.3e-100 369.4 201 88.1
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 1.9e-99 366.3 240 74.6
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 2.5e-99 365.9 254 72.4
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 1.6e-98 363.2 195 88.7
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.9e-94 349.7 200 84.5
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 3.9e-92 342.0 260 64.6
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.1e-89 332.4 258 67.8
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.8e-84 316.6 177 84.2
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 7.7e-80 301.2 161 88.8
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 1.9e-70 270.0 229 59.8
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.5e-64 249.2 240 57.1
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 3.8e-55 219.2 135 80.0
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 6.5e-55 218.4 113 91.2
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 1.5e-54 217.2 143 76.2
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 7.2e-54 214.9 142 75.4
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.5e-46 189.9 98 88.8
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 3.5e-40 169.5 271 42.4
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 2.9e-39 166.4 109 73.4
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 4.3e-38 162.5 196 50.0
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 9.5e-38 161.4 108 74.1
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 6.1e-37 158.7 135 60.7
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 1.8e-36 157.1 94 79.8
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 4.9e-34 149.1 195 47.2
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.2e-29 134.4 100 70.0
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 7.5e-27 125.2 81 76.5
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 1.3e-26 124.4 85 70.6
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.8e-21 106.7 111 55.9
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 1.3e-18 97.8 64 73.4
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 2.3e-12 77.0 81 51.9
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 4.1e-09 66.2 56 60.7
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 1.2e-08 64.7 35 85.7
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 3.5e-08 63.2 42 78.6
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 5.1e-07 59.3 59 50.8
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 1.1e-06 58.2 85 40.0
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.1e-06 58.2 62 53.2


User provided reference genes

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