Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0459 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 4.3e-95 351.3 173 100.0
SMO367G0814 Selaginella moellendorffii HOM05D006988 ORTHO05D008731 1.2e-94 349.7 173 99.4
SMO367G0117 Selaginella moellendorffii HOM05D012767 ORTHO05D008731 3.6e-70 268.5 179 79.3
SEGI_39512 Sequoiadendron giganteum HOM05D006988 ORTHO05D008731 1.8e-61 239.6 173 64.2
ClCG06G003000 Citrullus lanatus HOM05D006988 ORTHO05D008731 6.5e-59 231.1 173 61.8
arahy.Tifrunner.gnm1.ann1.EWF75K Arachis hypogaea HOM05D006988 ORTHO05D008731 1.4e-58 229.9 173 61.3
arahy.Tifrunner.gnm1.ann1.I2GGUW Arachis hypogaea HOM05D006988 ORTHO05D008731 1.4e-58 229.9 173 61.3
COL.COLO4_12466 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.4e-58 229.9 173 60.7
Phvul.008G157000 Phaseolus vulgaris HOM05D006988 ORTHO05D008731 5.5e-58 228.0 173 59.5
Rhsim07G0032500 Rhododendron simsii HOM05D006988 ORTHO05D008731 7.1e-58 227.6 171 61.4
Potri.014G058400 Populus trichocarpa HOM05D006988 ORTHO05D008731 1.2e-57 226.9 173 59.5
Sed0016586 Sechium edule HOM05D006988 ORTHO05D008731 1.2e-57 226.9 171 60.8
AT4G00030 Arabidopsis thaliana HOM05D006988 ORTHO05D008731 1.6e-57 226.5 171 60.2
MBI04_g09512_MAGBIO Magnolia biondii HOM05D006988 ORTHO05D008731 1.6e-57 226.5 174 61.5
Pp3c14_7270 Physcomitrium patens HOM05D006988 ORTHO05D008731 1.6e-57 226.5 174 62.6
EL10Ac1g00818 Beta vulgaris HOM05D006988 ORTHO05D008731 2.1e-57 226.1 173 61.3
Haze_02728 Corylus avellana HOM05D006988 ORTHO05D008731 2.1e-57 226.1 170 60.6
VMungo1383G3408 Vigna mungo HOM05D006988 ORTHO05D008731 2.1e-57 226.1 173 59.5
AUR62013709 Chenopodium quinoa HOM05D006988 ORTHO05D008731 2.7e-57 225.7 173 61.3
AUR62004148 Chenopodium quinoa HOM05D006988 ORTHO05D008731 3.5e-57 225.3 173 60.7
Dinv43657 Davidia involucrata HOM05D006988 ORTHO05D008731 3.5e-57 225.3 170 61.8
Glyma.01G076100 Glycine max HOM05D006988 ORTHO05D008731 3.5e-57 225.3 173 58.4
CARHR248070 Cardamine hirsuta HOM05D006988 ORTHO05D008731 4.6e-57 224.9 171 60.8
CsaV3_6G009120 Cucumis sativus L. HOM05D006988 ORTHO05D008731 6.0e-57 224.6 171 59.6
Hma1.2p1_0341F.1_g130300 Hydrangea macrophylla HOM05D006988 ORTHO05D008731 6.0e-57 224.6 173 61.3
TAR636G1375 Trochodendron aralioides HOM05D006988 ORTHO05D008731 6.0e-57 224.6 173 59.0
MELO3C021141.2 Cucumis melo HOM05D006988 ORTHO05D008731 7.9e-57 224.2 173 59.0
Ca_27093_v3 Cicer arietinum L. HOM05D006988 ORTHO05D008731 1.0e-56 223.8 173 59.5
Carub.0006s3719 Capsella rubella HOM05D006988 ORTHO05D008731 1.3e-56 223.4 170 61.8
Duzib133G0505 Durio zibethinus HOM05D006988 ORTHO05D008731 1.3e-56 223.4 173 57.2
Sabra14G0042600 Salix brachista HOM05D006988 ORTHO05D008731 1.3e-56 223.4 173 59.0
AL6G53480 Arabidopsis lyrata HOM05D006988 ORTHO05D008731 1.8e-56 223.0 171 59.6
Gohir.A07G147500 Gossypium hirsutum HOM05D006988 ORTHO05D008731 1.8e-56 223.0 173 58.4
THA.LOC104814078 Tarenaya hassleriana HOM05D006988 ORTHO05D008731 1.8e-56 223.0 173 57.2
Thecc.01G386200 Theobroma cacao HOM05D006988 ORTHO05D008731 1.8e-56 223.0 173 59.0
C09p00070 Brassica napus HOM05D006988 ORTHO05D008731 2.3e-56 222.6 170 60.0
BraA09t35681Z Brassica rapa HOM05D006988 ORTHO05D008731 2.3e-56 222.6 170 60.0
Gohir.D07G153600 Gossypium hirsutum HOM05D006988 ORTHO05D008731 2.3e-56 222.6 173 58.4
Lj1g0025695 Lotus japonicus HOM05D006988 ORTHO05D008731 2.3e-56 222.6 173 60.1
Manes.01G270400 Manihot esculenta HOM05D006988 ORTHO05D008731 2.3e-56 222.6 173 57.8
Sp6g00080 Schrenkiella parvula HOM05D006988 ORTHO05D008731 2.3e-56 222.6 170 60.0
Glyma.11G164037 Glycine max HOM05D006988 ORTHO05D008731 3.0e-56 222.2 173 58.4
CSS0001978 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.9e-56 221.9 173 59.0
CSS0011747 Camellia sinensis var. sinensis HOM05D006988 ORTHO05D008731 3.9e-56 221.9 173 59.0
Gorai.001G175700 Gossypium raimondii HOM05D006988 ORTHO05D008731 3.9e-56 221.9 173 57.8
BcaC04g24207 Brassica carinata HOM05D006988 ORTHO05D008731 6.7e-56 221.1 170 60.0
BolC9t52942H Brassica oleracea HOM05D006988 ORTHO05D008731 6.7e-56 221.1 170 60.0
CiPaw.13G030900 Carya illinoinensis HOM05D006988 ORTHO05D008731 6.7e-56 221.1 173 59.5
Mapoly0004s0296 Marchantia polymorpha HOM05D006988 ORTHO05D008731 6.7e-56 221.1 169 61.5
Nn6g33931 Nelumbo nucifera HOM05D006988 ORTHO05D008731 6.7e-56 221.1 173 57.8
ATR0317G076 Amborella trichopoda HOM05D006988 ORTHO05D008731 8.7e-56 220.7 171 59.6
Os04g0551700 Oryza sativa ssp. japonica HOM05D006988 ORTHO05D008731 8.7e-56 220.7 173 60.1
PGSC0003DMG400011763 Solanum tuberosum HOM05D006988 ORTHO05D008731 8.7e-56 220.7 173 59.5
BcaB01g02207 Brassica carinata HOM05D006988 ORTHO05D008731 1.1e-55 220.3 170 60.0
CANSAT01G0747 Cannabis sativa HOM05D006988 ORTHO05D008731 1.5e-55 219.9 175 58.3
Solyc10g018590.2 Solanum lycopersicum HOM05D006988 ORTHO05D008731 1.5e-55 219.9 170 60.0
CAN.G160.69 Capsicum annuum HOM05D006988 ORTHO05D008731 1.9e-55 219.5 173 58.4
Lsat_1_v5_gn_7_10320 Lactuca sativa HOM05D006988 ORTHO05D008731 1.9e-55 219.5 173 58.4
Sopen10g008330 Solanum pennellii HOM05D006988 ORTHO05D008731 1.9e-55 219.5 173 59.0
FAN03G1007 Fragaria x ananassa HOM05D006988 ORTHO05D008731 2.5e-55 219.2 173 58.4
Atru.chr5.214 Acer truncatum HOM05D006988 ORTHO05D008731 3.3e-55 218.8 173 57.8
QL04p035766 Quercus lobata HOM05D006988 ORTHO05D008731 4.3e-55 218.4 170 60.0
Hund17063 Selenicereus undatus HOM05D006988 ORTHO05D008731 9.6e-55 217.2 173 58.4
FvH4_7g10720 Fragaria vesca HOM05D006988 ORTHO05D008731 1.6e-54 216.5 173 58.4
FAN06G2548 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.6e-54 216.5 173 58.4
FAN06G3033 Fragaria x ananassa HOM05D006988 ORTHO05D008731 1.6e-54 216.5 173 58.4
Migut.B01575 Erythranthe guttata HOM05D006988 ORTHO05D008731 2.1e-54 216.1 170 58.8
Aqoxy7G00790 Aquilegia oxysepala HOM05D006988 ORTHO05D008731 2.8e-54 215.7 174 57.5
Lj9A563T51 Lonicera japonica HOM05D006988 ORTHO05D008731 2.8e-54 215.7 170 59.4
Cc02_g24580 Coffea canephora HOM05D006988 ORTHO05D008731 3.7e-54 215.3 173 57.8
SalBow5G4855 Salvia bowleyana HOM05D006988 ORTHO05D008731 4.8e-54 214.9 170 59.4
MD07G1111900 Malus domestica HOM05D006988 ORTHO05D008731 8.2e-54 214.2 173 56.1
PSO170G6265 Papaver somniferum HOM05D006988 ORTHO05D008731 8.2e-54 214.2 174 58.6
Peaxi162Scf00350g00014 Petunia axillaris HOM05D006988 ORTHO05D008731 1.1e-53 213.8 173 57.2
Zm00001eb257570 Zea mays HOM05D006988 ORTHO05D008731 1.1e-53 213.8 171 59.6
ECA236G3211 Erigeron canadensis HOM05D006988 ORTHO05D008731 5.3e-53 211.5 174 56.9
Prupe.2G135300 Prunus persica HOM05D006988 ORTHO05D008731 1.2e-52 210.3 173 57.2
Medtr7g444820 Medicago truncatula HOM05D006988 ORTHO05D008731 1.5e-52 209.9 173 55.5
DCAR_031865 Daucus carota HOM05D006988 ORTHO05D008731 2.6e-52 209.1 170 55.9
HanXRQChr06g0168881 Helianthus annuus HOM05D006988 ORTHO05D008731 7.6e-52 207.6 166 59.0
COL.COLO4_37993 Corchorus olitorius HOM05D006988 ORTHO05D008731 1.0e-51 207.2 176 54.0
Nitab4.5_0000882g0050 Nicotiana tabacum HOM05D006988 ORTHO05D008731 2.2e-51 206.1 183 55.7
GSVIVG01018209001 Vitis vinifera HOM05D006988 ORTHO05D008731 2.9e-51 205.7 132 68.9
Aa31LG5G100 Aethionema arabicum HOM05D006988 ORTHO05D008731 3.2e-50 202.2 188 52.7
Nitab4.5_0001501g0030 Nicotiana tabacum HOM05D006988 ORTHO05D008731 3.2e-50 202.2 165 58.2
SGA_v2.0_scaffold153G36954 Striga asiatica HOM05D006988 ORTHO05D008731 2.1e-49 199.5 197 51.8
TPR.G39083 Trifolium pratense HOM05D006988 ORTHO05D008731 2.1e-49 199.5 142 63.4
Ciclev10022767m.g Citrus clementina HOM05D006988 ORTHO05D008731 4.6e-49 198.4 133 66.2
TWI59G0585 Tripterygium wilfordii HOM05D006988 ORTHO05D008731 1.7e-43 179.9 170 54.1
Ah.16g110010 Amaranthus hybridus HOM05D006988 ORTHO05D008731 2.1e-41 172.9 143 58.0
RcHm_v2.0_Chr1g0348671 Rosa chinensis HOM05D006988 ORTHO05D008731 3.6e-41 172.2 144 56.2
Sc23g0003890 Simmondsia chinensis HOM05D006988 ORTHO05D008731 6.1e-41 171.4 162 51.9
Cpa.g.sc620.2 Carica papaya HOM05D006988 ORTHO05D008731 1.1e-39 167.2 140 57.9
FAN01G2452 Fragaria x ananassa HOM05D006988 ORTHO05D008731 6.3e-38 161.4 142 54.2
Eucgr.D02502 Eucalyptus grandis HOM05D006988 ORTHO05D008731 1.4e-37 160.2 143 53.1
MSTRG.20719 Avicennia marina HOM05D006988 ORTHO05D008731 2.4e-37 159.5 139 55.4
Cre14.g618050 Chlamydomonas reinhardtii HOM05D006988 ORTHO05D008731 6.5e-35 151.4 176 44.3
AagrBONN_evm.TU.Sc2ySwM_362.1347 Anthoceros agrestis HOM05D006988 ORTHO05D008731 5.5e-34 148.3 121 61.2
C03p91270 Brassica napus HOM05D006988 ORTHO05D008731 3.0e-32 142.5 120 55.0
Psat3g157120 Pisum sativum HOM05D006988 ORTHO05D008731 8.8e-32 141.0 122 57.4
Thhalv10028565m.g Eutrema salsugineum HOM05D000447 ORTHO05D000315 2.0e-31 139.8 118 59.3
vmacro13459 Vaccinium macrocarpon HOM05D006988 ORTHO05D008731 1.4e-29 133.7 118 55.9
PRCOL_00005443 Prasinoderma coloniale HOM05D006988 ORTHO05D008731 3.0e-24 115.9 233 34.8
C02p10970 Brassica napus HOM05D006988 ORTHO05D008731 5.2e-24 115.2 85 58.8
MCO12G266 Micromonas commoda HOM05D006988 ORTHO05D008731 6.7e-24 114.8 176 38.6
BcaC03g13893 Brassica carinata HOM05D006988 ORTHO05D008731 1.5e-23 113.6 188 35.6
BolC2t07167H Brassica oleracea HOM05D006988 ORTHO05D008731 1.5e-23 113.6 85 57.6
BcaC01g03084 Brassica carinata HOM05D006988 ORTHO05D008731 1.5e-18 97.1 169 33.1
Lalb_Chr19g0127481 Lupinus albus HOM05D006988 ORTHO05D008731 3.4e-15 85.9 53 60.4
unitig_26.g9723 Utricularia gibba HOM05D000502 ORTHO05D000356 4.4e-15 85.5 79 53.2
Actinidia12175 Actinidia chinensis HOM05D006988 ORTHO05D008731 3.5e-12 75.9 80 45.0
A09p00790 Brassica napus HOM05D006988 ORTHO05D008731 1.0e-11 74.3 66 56.1
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 1.0e-11 74.3 75 52.0
C03p56160 Brassica napus HOM05D001199 ORTHO05D001013 1.6e-09 67.0 60 51.7
Pp3c3_12020 Physcomitrium patens HOM05D005663 ORTHO05D007258 4.7e-09 65.5 186 24.7
BolC3t17906H Brassica oleracea HOM05D001199 ORTHO05D001013 3.0e-08 62.8 60 51.7
Cc07_g17370 Coffea canephora HOM05D005663 ORTHO05D007258 3.0e-08 62.8 166 24.7
Nn5g28726 Nelumbo nucifera HOM05D005663 ORTHO05D007258 1.2e-07 60.8 166 24.1
Nitab4.5_0002064g0060 Nicotiana tabacum HOM05D005663 ORTHO05D007258 1.5e-07 60.5 189 22.8
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 2.6e-07 59.7 170 27.6
PSO541G2505 Papaver somniferum HOM05D005663 ORTHO05D007258 2.6e-07 59.7 165 22.4
PSO675G3544 Papaver somniferum HOM05D005663 ORTHO05D007258 2.6e-07 59.7 165 22.4
Pp3c6_24510 Physcomitrium patens HOM05D006358 ORTHO05D008185 2.6e-07 59.7 162 25.9
Haze_25195 Corylus avellana HOM05D005663 ORTHO05D007258 3.4e-07 59.3 166 25.9
Haze_25187 Corylus avellana HOM05D005663 ORTHO05D007258 4.4e-07 58.9 173 26.0
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 4.4e-07 58.9 170 27.6
Ca_00085_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 5.7e-07 58.5 170 28.8
GSVIVG01026586001 Vitis vinifera HOM05D005663 ORTHO05D007258 5.7e-07 58.5 166 22.9
Actinidia22773 Actinidia chinensis HOM05D006988 ORTHO05D008731 7.5e-07 58.2 31 74.2
Ciclev10002308m.g Citrus clementina HOM05D003483 ORTHO05D004101 7.5e-07 58.2 172 29.1
HPP92_016149 Vanilla planifolia HOM05D005663 ORTHO05D007258 7.5e-07 58.2 144 25.0
CiPaw.03G123800 Carya illinoinensis HOM05D005663 ORTHO05D007258 9.8e-07 57.8 166 23.5
MBI09_g18623_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 1.3e-06 57.4 141 24.1
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 1.3e-06 57.4 170 27.6
Solyc11g005340.3 Solanum lycopersicum HOM05D005663 ORTHO05D007258 1.7e-06 57.0 165 23.0
PGSC0003DMG400003986 Solanum tuberosum HOM05D005663 ORTHO05D007258 2.2e-06 56.6 165 22.4
SGA_v2.0_scaffold137G35114 Striga asiatica HOM05D005663 ORTHO05D007258 2.2e-06 56.6 167 22.2
Manes.07G014500 Manihot esculenta HOM05D003483 ORTHO05D004101 2.8e-06 56.2 171 28.7
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 2.8e-06 56.2 172 28.5
HanXRQChr15g0490251 Helianthus annuus HOM05D005663 ORTHO05D007258 3.7e-06 55.8 175 25.7
SEGI_39378 Sequoiadendron giganteum HOM05D005663 ORTHO05D007258 4.9e-06 55.5 168 23.8
Ciclev10026263m.g Citrus clementina HOM05D005663 ORTHO05D007258 6.3e-06 55.1 188 21.8
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 6.3e-06 55.1 175 28.0
vmacro18658 Vaccinium macrocarpon HOM05D005663 ORTHO05D007258 6.3e-06 55.1 139 23.7
Duzib264G0763 Durio zibethinus HOM05D005663 ORTHO05D007258 8.3e-06 54.7 166 21.7
MBI09_g20114_MAGBIO Magnolia biondii HOM05D005663 ORTHO05D007258 8.3e-06 54.7 141 23.4
Mapoly0058s0022 Marchantia polymorpha HOM05D005663 ORTHO05D007258 8.3e-06 54.7 140 29.3


User provided reference genes

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