Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0437 Selaginella moellendorffii HOM05D005910 ORTHO05D007088 2.0e-98 362.5 187 100.0
Mapoly0107s0023 Marchantia polymorpha HOM05D005910 ORTHO05D007088 1.3e-68 263.5 185 77.3
Pp3c21_11350 Physcomitrium patens HOM05D005910 ORTHO05D007088 1.3e-65 253.4 187 73.3
ATR0598G129 Amborella trichopoda HOM05D005910 ORTHO05D007088 1.1e-64 250.4 185 69.2
AagrBONN_evm.TU.Sc2ySwM_117.1513 Anthoceros agrestis HOM05D005910 ORTHO05D007088 5.5e-64 248.1 187 69.5
BcaB04g21099 Brassica carinata HOM05D005910 ORTHO05D007088 1.4e-62 243.4 186 66.7
CARHR086590 Cardamine hirsuta HOM05D005910 ORTHO05D007088 1.4e-62 243.4 186 67.7
AT3G12030 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 1.8e-62 243.0 186 67.7
Cpa.g.sc85.46 Carica papaya HOM05D005910 ORTHO05D007088 5.2e-62 241.5 186 67.7
AL3G23640 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 8.8e-62 240.7 186 67.2
CSS0007798 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 8.8e-62 240.7 186 68.3
CiPaw.09G028200 Carya illinoinensis HOM05D005910 ORTHO05D007088 8.8e-62 240.7 184 68.5
Carub.0006s0554 Capsella rubella HOM05D005910 ORTHO05D007088 1.1e-61 240.4 186 68.3
BolC1t05270H Brassica oleracea HOM05D005910 ORTHO05D007088 1.5e-61 240.0 186 67.7
BcaC09g48209 Brassica carinata HOM05D005910 ORTHO05D007088 2.0e-61 239.6 186 67.7
CiPaw.10G025100 Carya illinoinensis HOM05D005910 ORTHO05D007088 2.0e-61 239.6 184 69.0
Cc06_g15530 Coffea canephora HOM05D005910 ORTHO05D007088 2.0e-61 239.6 182 69.2
Thhalv10022159m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 2.0e-61 239.6 186 67.7
AL6G16750 Arabidopsis lyrata HOM05D005910 ORTHO05D007088 2.6e-61 239.2 186 67.7
AT5G06660 Arabidopsis thaliana HOM05D005910 ORTHO05D007088 2.6e-61 239.2 186 67.7
Carub.0003s1137 Capsella rubella HOM05D005910 ORTHO05D007088 3.3e-61 238.8 186 66.7
PGR142G2565 Punica granatum HOM05D005910 ORTHO05D007088 3.3e-61 238.8 186 67.2
Atru.chr8.1156 Acer truncatum HOM05D005910 ORTHO05D007088 5.7e-61 238.0 185 67.6
CANSAT64G0849 Cannabis sativa HOM05D005910 ORTHO05D007088 5.7e-61 238.0 185 67.6
CARHR206550 Cardamine hirsuta HOM05D005910 ORTHO05D007088 5.7e-61 238.0 186 67.2
TAR623G1561 Trochodendron aralioides HOM05D005910 ORTHO05D007088 5.7e-61 238.0 183 69.9
Sp6g36210 Schrenkiella parvula HOM05D005910 ORTHO05D007088 7.5e-61 237.7 186 67.7
unitig_26.g10040 Utricularia gibba HOM05D005910 ORTHO05D007088 7.5e-61 237.7 188 67.6
MSTRG.19925 Avicennia marina HOM05D005910 ORTHO05D007088 9.7e-61 237.3 189 66.1
FAN05G0623 Fragaria x ananassa HOM05D005910 ORTHO05D007088 9.7e-61 237.3 185 67.6
FAN14G5103 Fragaria x ananassa HOM05D005910 ORTHO05D007088 9.7e-61 237.3 185 67.6
BraA01t04144Z Brassica rapa HOM05D005910 ORTHO05D007088 1.3e-60 236.9 186 67.2
Glyma.16G043900 Glycine max HOM05D005910 ORTHO05D007088 1.3e-60 236.9 181 68.5
Gohir.D09G124900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 1.7e-60 236.5 186 67.7
Gorai.006G143800 Gossypium raimondii HOM05D005910 ORTHO05D007088 1.7e-60 236.5 186 67.7
Lsat_1_v5_gn_2_56160 Lactuca sativa HOM05D005910 ORTHO05D007088 1.7e-60 236.5 181 68.5
MD12G1054500 Malus domestica HOM05D005910 ORTHO05D007088 1.7e-60 236.5 186 66.1
Oeu057587.1 Olea europaea HOM05D005910 ORTHO05D007088 1.7e-60 236.5 186 68.3
Sp3g10260 Schrenkiella parvula HOM05D005910 ORTHO05D007088 1.7e-60 236.5 186 67.2
GSVIVG01033465001 Vitis vinifera HOM05D005910 ORTHO05D007088 1.7e-60 236.5 185 68.6
FvH4_6g21840 Fragaria vesca HOM05D005910 ORTHO05D007088 2.2e-60 236.1 185 67.0
PSO478G2464 Papaver somniferum HOM05D005910 ORTHO05D007088 2.2e-60 236.1 184 66.3
TAR369G0766 Trochodendron aralioides HOM05D005910 ORTHO05D007088 2.2e-60 236.1 180 70.6
Aqoxy7G00427 Aquilegia oxysepala HOM05D005910 ORTHO05D007088 2.8e-60 235.7 184 67.4
FAN02G0902 Fragaria x ananassa HOM05D005910 ORTHO05D007088 2.8e-60 235.7 185 67.0
Sed0016712 Sechium edule HOM05D005910 ORTHO05D007088 4.8e-60 235.0 185 66.5
Aa31LG3G5420 Aethionema arabicum HOM05D005910 ORTHO05D007088 8.2e-60 234.2 186 66.1
Dinv16345 Davidia involucrata HOM05D005910 ORTHO05D007088 8.2e-60 234.2 186 67.7
Gohir.A09G128900 Gossypium hirsutum HOM05D005910 ORTHO05D007088 8.2e-60 234.2 186 67.2
Thecc.05G175100 Theobroma cacao HOM05D005910 ORTHO05D007088 1.1e-59 233.8 186 67.2
Thhalv10016091m.g Eutrema salsugineum HOM05D005910 ORTHO05D007088 1.4e-59 233.4 183 66.1
Phvul.001G097100 Phaseolus vulgaris HOM05D005910 ORTHO05D007088 1.4e-59 233.4 181 67.4
Zm00001eb215980 Zea mays HOM05D005910 ORTHO05D007088 1.4e-59 233.4 193 62.7
Actinidia17287 Actinidia chinensis HOM05D005910 ORTHO05D007088 1.8e-59 233.0 184 66.8
CAN.G960.19 Capsicum annuum HOM05D005910 ORTHO05D007088 1.8e-59 233.0 186 66.7
COL.COLO4_29362 Corchorus olitorius HOM05D005910 ORTHO05D007088 1.8e-59 233.0 183 67.8
RcHm_v2.0_Chr3g0479191 Rosa chinensis HOM05D005910 ORTHO05D007088 1.8e-59 233.0 184 66.3
VMungo1383G3424 Vigna mungo HOM05D005910 ORTHO05D007088 1.8e-59 233.0 181 67.4
DCAR_019862 Daucus carota HOM05D005910 ORTHO05D007088 2.4e-59 232.6 186 67.2
Glyma.19G108300 Glycine max HOM05D005910 ORTHO05D007088 2.4e-59 232.6 181 67.4
Os03g0721400 Oryza sativa ssp. japonica HOM05D005910 ORTHO05D007088 2.4e-59 232.6 201 60.7
Actinidia38597 Actinidia chinensis HOM05D005910 ORTHO05D007088 3.1e-59 232.3 183 66.7
Ca_08246_v3 Cicer arietinum L. HOM05D005910 ORTHO05D007088 3.1e-59 232.3 181 66.9
Medtr7g085050 Medicago truncatula HOM05D005910 ORTHO05D007088 3.1e-59 232.3 181 66.9
Psat3g091080 Pisum sativum HOM05D005910 ORTHO05D007088 3.1e-59 232.3 181 66.9
ClCG10G017690 Citrullus lanatus HOM05D005910 ORTHO05D007088 4.1e-59 231.9 184 65.8
MELO3C009607.2 Cucumis melo HOM05D005910 ORTHO05D007088 4.1e-59 231.9 184 66.3
Lalb_Chr22g0359441 Lupinus albus HOM05D005910 ORTHO05D007088 4.1e-59 231.9 184 65.8
TPR.G5912 Trifolium pratense HOM05D005910 ORTHO05D007088 5.3e-59 231.5 181 66.9
Lj1g0011929 Lotus japonicus HOM05D005910 ORTHO05D007088 7.0e-59 231.1 181 66.9
Manes.09G037701 Manihot esculenta HOM05D005910 ORTHO05D007088 7.0e-59 231.1 184 66.8
THA.LOC104799285 Tarenaya hassleriana HOM05D005910 ORTHO05D007088 7.0e-59 231.1 186 65.1
Hma1.2p1_0124F.1_g058350 Hydrangea macrophylla HOM05D005910 ORTHO05D007088 9.1e-59 230.7 184 66.8
Lalb_Chr14g0364291 Lupinus albus HOM05D005910 ORTHO05D007088 9.1e-59 230.7 181 65.7
SGA_v2.0_scaffold69G23042 Striga asiatica HOM05D005910 ORTHO05D007088 9.1e-59 230.7 187 65.8
Zm00001eb055560 Zea mays HOM05D005910 ORTHO05D007088 9.1e-59 230.7 191 62.8
CBR_g49549 Chara braunii HOM05D005910 ORTHO05D007088 1.2e-58 230.3 184 63.6
Sc13g0002410 Simmondsia chinensis HOM05D005910 ORTHO05D007088 1.2e-58 230.3 180 66.1
QL07p024560 Quercus lobata HOM05D005910 ORTHO05D007088 1.6e-58 229.9 191 65.4
Duzib106G1486 Durio zibethinus HOM05D005910 ORTHO05D007088 2.0e-58 229.6 183 67.2
Migut.J01866 Erythranthe guttata HOM05D005910 ORTHO05D007088 2.6e-58 229.2 187 65.2
Rhsim04G0093900 Rhododendron simsii HOM05D005910 ORTHO05D007088 3.5e-58 228.8 186 65.1
Prupe.7G082200 Prunus persica HOM05D005910 ORTHO05D007088 5.9e-58 228.0 184 64.7
Rhsim04G0095300 Rhododendron simsii HOM05D005910 ORTHO05D007088 5.9e-58 228.0 186 65.1
CsaV3_3G038630 Cucumis sativus L. HOM05D005910 ORTHO05D007088 3.8e-57 225.3 169 68.6
TWI77G0716 Tripterygium wilfordii HOM05D005910 ORTHO05D007088 3.8e-57 225.3 184 65.2
Haze_20022 Corylus avellana HOM05D005910 ORTHO05D007088 8.5e-57 224.2 185 65.4
Haze_20025 Corylus avellana HOM05D005910 ORTHO05D007088 8.5e-57 224.2 185 65.4
ECA238G3575 Erigeron canadensis HOM05D005910 ORTHO05D007088 1.9e-56 223.0 185 64.9
Solyc10g079000.1 Solanum lycopersicum HOM05D005910 ORTHO05D007088 1.9e-56 223.0 186 64.5
Sopen10g029620 Solanum pennellii HOM05D005910 ORTHO05D007088 1.9e-56 223.0 186 64.5
PGSC0003DMG400011451 Solanum tuberosum HOM05D005910 ORTHO05D007088 1.9e-56 223.0 186 64.5
HPP92_021275 Vanilla planifolia HOM05D005910 ORTHO05D007088 5.5e-56 221.5 192 62.0
Manes.08G042400 Manihot esculenta HOM05D005910 ORTHO05D007088 7.2e-56 221.1 184 64.7
Nitab4.5_0000009g0230 Nicotiana tabacum HOM05D005910 ORTHO05D007088 2.1e-55 219.5 183 64.5
Lsat_1_v5_gn_6_36581 Lactuca sativa HOM05D005910 ORTHO05D007088 6.1e-55 218.0 178 65.2
Potri.016G060300 Populus trichocarpa HOM05D005910 ORTHO05D007088 6.1e-55 218.0 184 63.6
AUR62012008 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.0e-54 217.2 180 63.3
Peaxi162Scf00463g00044 Petunia axillaris HOM05D005910 ORTHO05D007088 1.0e-54 217.2 183 63.9
Nitab4.5_0009361g0020 Nicotiana tabacum HOM05D005910 ORTHO05D007088 1.8e-54 216.5 183 63.9
Cfa020141 Carpinus fangiana HOM05D005910 ORTHO05D007088 4.0e-54 215.3 185 62.7
AUR62015329 Chenopodium quinoa HOM05D005910 ORTHO05D007088 6.8e-54 214.5 180 62.2
EL10Ac3g06882 Beta vulgaris HOM05D005910 ORTHO05D007088 2.6e-53 212.6 183 62.3
vmacro22120 Vaccinium macrocarpon HOM05D005910 ORTHO05D007088 3.7e-52 208.8 176 64.2
HanXRQChr14g0438251 Helianthus annuus HOM05D005910 ORTHO05D007088 3.1e-51 205.7 181 61.3
Sed0026900 Sechium edule HOM05D005910 ORTHO05D007088 7.0e-51 204.5 184 60.9
SHI31753 Sapria himalayana HOM05D005910 ORTHO05D007088 2.0e-50 203.0 181 60.2
SEGI_08450 Sequoiadendron giganteum HOM05D005910 ORTHO05D007088 2.2e-49 199.5 165 67.3
HanXRQChr03g0075461 Helianthus annuus HOM05D005910 ORTHO05D007088 1.8e-46 189.9 179 56.4
Ciclev10013918m.g Citrus clementina HOM05D005910 ORTHO05D007088 4.9e-44 181.8 126 74.6
Sabra16G0063200 Salix brachista HOM05D005910 ORTHO05D007088 9.1e-43 177.6 126 73.0
Lj1P1133T16 Lonicera japonica HOM05D005910 ORTHO05D007088 1.7e-41 173.3 126 73.0
CSS0031188 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.2e-38 161.8 174 51.1
Dinv24042 Davidia involucrata HOM05D005910 ORTHO05D007088 1.6e-34 150.2 186 52.2
Haze_26182 Corylus avellana HOM05D005910 ORTHO05D007088 2.7e-34 149.4 175 44.0
CSS0042896 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 5.9e-34 148.3 184 50.5
MD11G1118600 Malus domestica HOM05D005910 ORTHO05D007088 3.9e-33 145.6 123 62.6
MD14G1053500 Malus domestica HOM05D005910 ORTHO05D007088 5.6e-32 141.7 115 64.3
DCAR_009688 Daucus carota HOM05D005910 ORTHO05D007088 1.2e-31 140.6 99 72.7
CSS0024230 Camellia sinensis var. sinensis HOM05D005910 ORTHO05D007088 1.0e-30 137.5 187 46.5
Actinidia38594 Actinidia chinensis HOM05D005910 ORTHO05D007088 6.8e-30 134.8 114 63.2
MD03G1239200 Malus domestica HOM05D005910 ORTHO05D007088 5.0e-25 118.6 135 54.1
MD00G1019800 Malus domestica HOM05D005910 ORTHO05D007088 2.5e-24 116.3 94 63.8
QL03p020127 Quercus lobata HOM05D005910 ORTHO05D007088 6.8e-22 108.2 88 63.6
QL07p006238 Quercus lobata HOM05D005910 ORTHO05D007088 2.2e-20 103.2 106 54.7
CDE06G1328 Ceratophyllum demersum HOM05D005910 ORTHO05D007088 2.9e-20 102.8 86 64.0
PRCOL_00005630 Prasinoderma coloniale HOM05D005910 ORTHO05D007088 1.5e-16 90.5 175 32.0
Glyma.07G000600 Glycine max HOM05D005910 ORTHO05D007088 6.2e-15 85.1 60 76.7
Cre03.g182900 Chlamydomonas reinhardtii HOM05D005910 ORTHO05D007088 5.8e-13 78.6 166 31.3
Sabra08G0162900 Salix brachista HOM05D003359 ORTHO05D007088 1.3e-12 77.4 45 73.3
AUR62043130 Chenopodium quinoa HOM05D005910 ORTHO05D007088 1.7e-12 77.0 65 64.6
SGA_v2.0_scaffold131G34402 Striga asiatica HOM05D005910 ORTHO05D007088 1.4e-06 57.4 54 66.7


User provided reference genes

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