Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0340 Selaginella moellendorffii HOM05D018912 ORTHO05D004121 0.0e+00 1482.6 778 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3362 Anthoceros agrestis HOM05D018912 ORTHO05D021275 1.4e-36 159.1 553 31.3
Pp3c12_23920 Physcomitrium patens HOM05D018912 ORTHO05D021275 3.4e-22 111.3 372 31.7
Pp3c4_1590 Physcomitrium patens HOM05D018912 ORTHO05D021275 3.7e-21 107.8 426 28.9
Pp3c3_35360 Physcomitrium patens HOM05D018912 ORTHO05D021275 8.3e-21 106.7 228 36.8
SEGI_35614 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 6.1e-16 90.5 267 30.7
TAR629G1848 Trochodendron aralioides HOM05D003672 ORTHO05D004121 6.1e-16 90.5 673 25.9
BraA03t13796Z Brassica rapa HOM05D003672 ORTHO05D004121 1.0e-15 89.7 305 30.2
ECA232G2426 Erigeron canadensis HOM05D003672 ORTHO05D004121 4.0e-15 87.8 421 25.9
Nn4g23428 Nelumbo nucifera HOM05D003672 ORTHO05D004121 5.2e-15 87.4 631 24.6
BcaC06g33181 Brassica carinata HOM05D003672 ORTHO05D004121 3.4e-14 84.7 336 27.1
THA.LOC104819401 Tarenaya hassleriana HOM05D003672 ORTHO05D004121 3.4e-14 84.7 352 27.8
Thhalv10003875m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 5.7e-14 84.0 323 29.4
C07p44780 Brassica napus HOM05D003672 ORTHO05D004121 1.3e-13 82.8 336 26.8
Carub.0008s2173 Capsella rubella HOM05D003672 ORTHO05D004121 1.3e-13 82.8 330 29.1
CARHR274750 Cardamine hirsuta HOM05D003672 ORTHO05D004121 1.7e-13 82.4 315 28.3
Nn3g17451 Nelumbo nucifera HOM05D003672 ORTHO05D004121 1.7e-13 82.4 485 24.3
SMO116G0351 Selaginella moellendorffii HOM05D005497 ORTHO05D006733 2.8e-13 81.6 215 32.6
Mapoly0104s0008 Marchantia polymorpha HOM05D018912 ORTHO05D021275 4.8e-13 80.9 556 24.1
TWI60G1197 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 6.3e-13 80.5 300 28.3
EL10Ac5g11131 Beta vulgaris HOM05D003672 ORTHO05D004121 1.1e-12 79.7 229 30.6
Gohir.A07G068500 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.1e-12 79.7 453 26.0
Manes.14G085800 Manihot esculenta HOM05D003672 ORTHO05D004121 1.1e-12 79.7 281 27.8
Actinidia18990 Actinidia chinensis HOM05D003672 ORTHO05D004121 1.4e-12 79.3 239 29.7
Cpa.g.sc94.57 Carica papaya HOM05D003672 ORTHO05D004121 2.4e-12 78.6 249 30.1
Lj5C102T25 Lonicera japonica HOM05D003672 ORTHO05D004121 2.4e-12 78.6 267 28.8
SEGI_10408 Sequoiadendron giganteum HOM05D003672 ORTHO05D004121 5.4e-12 77.4 261 28.7
GSVIVG01012221001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.4e-12 77.4 195 34.9
Actinidia35037 Actinidia chinensis HOM05D003672 ORTHO05D004121 7.0e-12 77.0 383 26.6
Actinidia31938 Actinidia chinensis HOM05D003672 ORTHO05D004121 9.1e-12 76.6 228 31.1
AUR62021559 Chenopodium quinoa HOM05D003672 ORTHO05D004121 9.1e-12 76.6 235 30.6
AUR62008531 Chenopodium quinoa HOM05D003672 ORTHO05D004121 1.6e-11 75.9 247 29.6
BraA10t44910Z Brassica rapa HOM05D003672 ORTHO05D004121 3.5e-11 74.7 198 32.8
AL8G37700 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 7.7e-11 73.6 430 23.5
Eucgr.B00592 Eucalyptus grandis HOM05D003672 ORTHO05D004121 7.7e-11 73.6 516 25.2
Potri.008G096100 Populus trichocarpa HOM05D003672 ORTHO05D004121 7.7e-11 73.6 214 30.8
A10p28610 Brassica napus HOM05D003672 ORTHO05D004121 1.0e-10 73.2 229 30.1
Sp2g24340 Schrenkiella parvula HOM05D003672 ORTHO05D004121 1.0e-10 73.2 313 25.6
Dinv22781 Davidia involucrata HOM05D003672 ORTHO05D004121 1.3e-10 72.8 287 28.2
HanXRQChr09g0270231 Helianthus annuus HOM05D003672 ORTHO05D004121 1.3e-10 72.8 307 26.4
Lsat_1_v5_gn_4_111040 Lactuca sativa HOM05D003672 ORTHO05D004121 1.3e-10 72.8 333 27.0
AT5G61040 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 1.7e-10 72.4 425 24.5
Migut.L01667 Erythranthe guttata HOM05D007360 ORTHO05D008235 1.7e-10 72.4 215 28.8
HanXRQChr16g0502451 Helianthus annuus HOM05D003672 ORTHO05D004121 1.7e-10 72.4 320 26.9
Carub.0006s0690 Capsella rubella HOM05D003672 ORTHO05D004121 2.3e-10 72.0 246 28.9
ATR0177G058 Amborella trichopoda HOM05D003672 ORTHO05D004121 3.8e-10 71.2 413 25.9
Migut.D01656 Erythranthe guttata HOM05D003672 ORTHO05D004121 3.8e-10 71.2 245 32.2
Nitab4.5_0001485g0140 Nicotiana tabacum HOM05D003672 ORTHO05D004121 3.8e-10 71.2 433 24.7
TAR629G0952 Trochodendron aralioides HOM05D003672 ORTHO05D004121 3.8e-10 71.2 739 24.6
Zm00001eb136280 Zea mays HOM05D003672 ORTHO05D004121 5.0e-10 70.9 234 32.5
Duzib084G0362 Durio zibethinus HOM05D003672 ORTHO05D004121 6.6e-10 70.5 253 29.6
Eucgr.B03149 Eucalyptus grandis HOM05D003672 ORTHO05D004121 6.6e-10 70.5 214 29.9
SEGI_31561 Sequoiadendron giganteum HOM05D007360 ORTHO05D008235 6.6e-10 70.5 263 28.5
CDE04G0191 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 8.6e-10 70.1 250 28.4
Atru.chr9.577 Acer truncatum HOM05D003672 ORTHO05D004121 1.1e-09 69.7 241 29.0
Cc00_g14840 Coffea canephora HOM05D003672 ORTHO05D004121 1.1e-09 69.7 265 27.9
PGR004G0580 Punica granatum HOM05D007360 ORTHO05D008235 1.1e-09 69.7 269 26.4
Gohir.A12G182700 Gossypium hirsutum HOM05D003672 ORTHO05D004121 1.5e-09 69.3 258 28.7
Rhsim12G0148200 Rhododendron simsii HOM05D003672 ORTHO05D004121 1.5e-09 69.3 235 31.5
Thecc.03G101900 Theobroma cacao HOM05D003672 ORTHO05D004121 1.5e-09 69.3 302 27.8
Gorai.001G077200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.9e-09 68.9 244 29.5
C09p68900 Brassica napus HOM05D003672 ORTHO05D004121 2.5e-09 68.6 304 28.9
BolC7t45002H Brassica oleracea HOM05D003672 ORTHO05D004121 2.5e-09 68.6 346 24.9
Haze_11907 Corylus avellana HOM05D003672 ORTHO05D004121 2.5e-09 68.6 195 31.3
Gohir.D07G073000 Gossypium hirsutum HOM05D003672 ORTHO05D004121 2.5e-09 68.6 244 29.5
BolC9t59636H Brassica oleracea HOM05D003672 ORTHO05D004121 3.3e-09 68.2 304 28.9
Dinv34068 Davidia involucrata HOM05D003672 ORTHO05D004121 3.3e-09 68.2 373 26.0
MBI15_g07765_MAGBIO Magnolia biondii HOM05D005497 ORTHO05D006733 3.3e-09 68.2 232 28.0
Manes.06G084700 Manihot esculenta HOM05D003672 ORTHO05D004121 3.3e-09 68.2 237 28.7
PGR102G2240 Punica granatum HOM05D003672 ORTHO05D004121 3.3e-09 68.2 208 30.8
Sabra08G0072400 Salix brachista HOM05D003672 ORTHO05D004121 3.3e-09 68.2 263 27.8
Zm00001eb029540 Zea mays HOM05D003672 ORTHO05D004121 3.3e-09 68.2 232 32.8
Prupe.5G205200 Prunus persica HOM05D003672 ORTHO05D004121 4.2e-09 67.8 236 27.1
COL.COLO4_27062 Corchorus olitorius HOM05D007360 ORTHO05D008235 5.5e-09 67.4 231 27.3
DCAR_023172 Daucus carota HOM05D003672 ORTHO05D004121 5.5e-09 67.4 227 30.4
Duzib205G1655 Durio zibethinus HOM05D003672 ORTHO05D004121 5.5e-09 67.4 222 29.7
MD14G1212000 Malus domestica HOM05D003672 ORTHO05D004121 5.5e-09 67.4 510 23.3
GSVIVG01007866001 Vitis vinifera HOM05D003672 ORTHO05D004121 5.5e-09 67.4 354 26.8
CSS0037619 Camellia sinensis var. sinensis HOM05D003672 ORTHO05D004121 7.2e-09 67.0 226 30.1
Gohir.D12G185800 Gossypium hirsutum HOM05D003672 ORTHO05D004121 7.2e-09 67.0 258 27.1
Sopen03g034170 Solanum pennellii HOM05D003672 ORTHO05D004121 7.2e-09 67.0 237 29.1
HPP92_000460 Vanilla planifolia HOM05D003672 ORTHO05D004121 7.2e-09 67.0 237 28.7
FAN13G1740 Fragaria x ananassa HOM05D003672 ORTHO05D004121 9.5e-09 66.6 260 28.5
Ah.02g114040 Amaranthus hybridus HOM05D003672 ORTHO05D004121 1.2e-08 66.2 229 28.4
Atru.chr11.1624 Acer truncatum HOM05D003672 ORTHO05D004121 1.6e-08 65.9 239 30.5
FvH4_5g13830 Fragaria vesca HOM05D003672 ORTHO05D004121 1.6e-08 65.9 254 29.9
Gorai.008G199200 Gossypium raimondii HOM05D003672 ORTHO05D004121 1.6e-08 65.9 258 27.1
Potri.015G057600 Populus trichocarpa HOM05D003672 ORTHO05D004121 1.6e-08 65.9 239 27.6
BcaB08g37298 Brassica carinata HOM05D003672 ORTHO05D004121 2.1e-08 65.5 193 32.1
Ciclev10011834m.g Citrus clementina HOM05D007360 ORTHO05D008235 2.1e-08 65.5 243 29.2
FAN18G3332 Fragaria x ananassa HOM05D003672 ORTHO05D004121 2.1e-08 65.5 254 29.5
Oeu044870.1 Olea europaea HOM05D003672 ORTHO05D004121 2.1e-08 65.5 211 29.4
CiPaw.12G008500 Carya illinoinensis HOM05D003672 ORTHO05D004121 2.8e-08 65.1 339 23.9
FAN14G4542 Fragaria x ananassa HOM05D007360 ORTHO05D008235 2.8e-08 65.1 272 24.3
arahy.Tifrunner.gnm1.ann1.03S8MC Arachis hypogaea HOM05D003672 ORTHO05D004121 3.6e-08 64.7 222 29.7
arahy.Tifrunner.gnm1.ann1.R6LVKU Arachis hypogaea HOM05D003672 ORTHO05D004121 3.6e-08 64.7 222 29.7
MSTRG.22965 Avicennia marina HOM05D003672 ORTHO05D004121 3.6e-08 64.7 224 26.8
PGSC0003DMG400028369 Solanum tuberosum HOM05D003672 ORTHO05D004121 3.6e-08 64.7 206 29.6
Thecc.05G055700 Theobroma cacao HOM05D007360 ORTHO05D008235 3.6e-08 64.7 254 26.4
CDE07G1307 Ceratophyllum demersum HOM05D003672 ORTHO05D004121 4.7e-08 64.3 118 39.8
Hma1.2p1_0060F.1_g033090 Hydrangea macrophylla HOM05D003672 ORTHO05D004121 4.7e-08 64.3 332 25.6
Nn2g13027 Nelumbo nucifera HOM05D007360 ORTHO05D008235 4.7e-08 64.3 276 29.0
Solyc05g012230.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 4.7e-08 64.3 203 31.5
Nitab4.5_0009401g0050 Nicotiana tabacum HOM05D003672 ORTHO05D004121 6.1e-08 63.9 233 28.8
PGR083G2392 Punica granatum HOM05D003672 ORTHO05D004121 6.1e-08 63.9 367 25.9
Cfa019341 Carpinus fangiana HOM05D003672 ORTHO05D004121 8.0e-08 63.5 249 28.1
Ciclev10033781m.g Citrus clementina HOM05D003672 ORTHO05D004121 8.0e-08 63.5 210 29.5
Solyc03g115100.4 Solanum lycopersicum HOM05D003672 ORTHO05D004121 8.0e-08 63.5 287 26.8
Cc11_g11950 Coffea canephora HOM05D003672 ORTHO05D004121 1.0e-07 63.2 239 29.3
TAR625G1494 Trochodendron aralioides HOM05D005497 ORTHO05D006733 1.0e-07 63.2 118 39.8
TAR633G0942 Trochodendron aralioides HOM05D007360 ORTHO05D008235 1.0e-07 63.2 260 26.2
Dinv17414 Davidia involucrata HOM05D003672 ORTHO05D004121 1.4e-07 62.8 327 27.5
FvH4_6g15500 Fragaria vesca HOM05D007360 ORTHO05D008235 1.4e-07 62.8 267 24.3
FAN09G4144 Fragaria x ananassa HOM05D007360 ORTHO05D008235 1.4e-07 62.8 269 24.2
Gohir.A05G059400 Gossypium hirsutum HOM05D005497 ORTHO05D006733 1.4e-07 62.8 218 27.5
Potri.006G130600 Populus trichocarpa HOM05D007360 ORTHO05D008235 1.4e-07 62.8 248 26.6
vmacro20051 Vaccinium macrocarpon HOM05D007360 ORTHO05D008235 1.4e-07 62.8 249 28.9
Os12g0576300 Oryza sativa ssp. japonica HOM05D003672 ORTHO05D004121 1.8e-07 62.4 190 30.5
Peaxi162Scf00201g00329 Petunia axillaris HOM05D003672 ORTHO05D004121 1.8e-07 62.4 224 27.2
Cfa017520 Carpinus fangiana HOM05D007360 ORTHO05D008235 2.3e-07 62.0 303 26.7
CiPaw.09G179100 Carya illinoinensis HOM05D007360 ORTHO05D008235 2.3e-07 62.0 300 25.3
Duzib093G0075 Durio zibethinus HOM05D007360 ORTHO05D008235 2.3e-07 62.0 231 26.4
Sc20g0005120 Simmondsia chinensis HOM05D007360 ORTHO05D008235 2.3e-07 62.0 235 23.8
TWI32G0158 Tripterygium wilfordii HOM05D005497 ORTHO05D006733 2.3e-07 62.0 220 25.0
AL6G18360 Arabidopsis lyrata HOM05D003672 ORTHO05D004121 3.0e-07 61.6 304 25.7
FAN27G2527 Fragaria x ananassa HOM05D005497 ORTHO05D006733 3.0e-07 61.6 204 27.5
Oeu061164.2 Olea europaea HOM05D003672 ORTHO05D004121 3.0e-07 61.6 196 31.6
Prupe.6G240300 Prunus persica HOM05D007360 ORTHO05D008235 3.0e-07 61.6 239 25.5
Hund02585 Selenicereus undatus HOM05D003672 ORTHO05D004121 3.0e-07 61.6 241 27.8
TWI15G0151 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 3.0e-07 61.6 313 24.9
DCAR_020845 Daucus carota HOM05D007360 ORTHO05D008235 4.0e-07 61.2 261 25.7
ECA233G1662 Erigeron canadensis HOM05D000677 ORTHO05D000727 4.0e-07 61.2 189 30.7
Gorai.009G062600 Gossypium raimondii HOM05D005497 ORTHO05D006733 4.0e-07 61.2 221 27.1
PSO478G1233 Papaver somniferum HOM05D003672 ORTHO05D004121 4.0e-07 61.2 483 23.4
Aa31LG3G18520 Aethionema arabicum HOM05D003672 ORTHO05D004121 5.2e-07 60.8 201 28.9
Haze_07732 Corylus avellana HOM05D003672 ORTHO05D004121 5.2e-07 60.8 295 26.4
CAN.G3169.1 Capsicum annuum HOM05D002946 ORTHO05D003299 6.8e-07 60.5 231 28.1
CiPaw.05G125000 Carya illinoinensis HOM05D003672 ORTHO05D004121 6.8e-07 60.5 198 31.3
Ciclev10019089m.g Citrus clementina HOM05D003672 ORTHO05D004121 6.8e-07 60.5 269 27.1
Lsat_1_v5_gn_6_30100 Lactuca sativa HOM05D007360 ORTHO05D008235 8.9e-07 60.1 207 26.1
Lj5g0015354 Lotus japonicus HOM05D007360 ORTHO05D008235 8.9e-07 60.1 240 29.2
THA.LOC104799021 Tarenaya hassleriana HOM05D005497 ORTHO05D006733 8.9e-07 60.1 129 36.4
A03p46740 Brassica napus HOM05D003672 ORTHO05D004121 1.2e-06 59.7 302 27.5
FAN08G3423 Fragaria x ananassa HOM05D003672 ORTHO05D004121 1.2e-06 59.7 279 26.5
PSO017G3206 Papaver somniferum HOM05D003672 ORTHO05D004121 1.2e-06 59.7 483 23.4
Peaxi162Scf00175g00022 Petunia axillaris HOM05D003672 ORTHO05D004121 1.2e-06 59.7 265 28.3
Nn8g39874 Nelumbo nucifera HOM05D005497 ORTHO05D006733 1.5e-06 59.3 133 36.1
Actinidia19699 Actinidia chinensis HOM05D007360 ORTHO05D008235 2.0e-06 58.9 254 27.2
AT5G08010 Arabidopsis thaliana HOM05D003672 ORTHO05D004121 2.0e-06 58.9 321 25.2
Migut.A00338 Erythranthe guttata HOM05D005497 ORTHO05D006733 2.0e-06 58.9 157 31.2
QL10p019524 Quercus lobata HOM05D003672 ORTHO05D004121 2.0e-06 58.9 383 25.3
COL.COLO4_06856 Corchorus olitorius HOM05D003672 ORTHO05D004121 2.6e-06 58.5 230 28.7
Gohir.D05G061500 Gossypium hirsutum HOM05D005497 ORTHO05D006733 2.6e-06 58.5 224 27.2
Nn2g12349 Nelumbo nucifera HOM05D005497 ORTHO05D006733 2.6e-06 58.5 118 39.0
Pp3c8_2130 Physcomitrium patens HOM05D018912 ORTHO05D021275 2.6e-06 58.5 196 29.1
SGA_v2.0_scaffold126G33907 Striga asiatica HOM05D007360 ORTHO05D008235 2.6e-06 58.5 257 24.1
Thecc.09G016200 Theobroma cacao HOM05D005497 ORTHO05D006733 2.6e-06 58.5 224 26.3
Ah.11g047770 Amaranthus hybridus HOM05D003672 ORTHO05D004121 3.4e-06 58.2 271 26.2
Peaxi162Scf00195g00412 Petunia axillaris HOM05D005497 ORTHO05D006733 3.4e-06 58.2 208 29.8
PGSC0003DMG400001741 Solanum tuberosum HOM05D007360 ORTHO05D008235 3.4e-06 58.2 225 26.7
Duzib168G1440 Durio zibethinus HOM05D005497 ORTHO05D006733 4.4e-06 57.8 203 27.1
Thhalv10013089m.g Eutrema salsugineum HOM05D003672 ORTHO05D004121 4.4e-06 57.8 210 27.6
Hma1.2p1_1284F.1_g272900 Hydrangea macrophylla HOM05D005497 ORTHO05D006733 4.4e-06 57.8 119 36.1
MELO3C009325.2 Cucumis melo HOM05D007360 ORTHO05D008235 5.7e-06 57.4 314 23.6
QL07p045105 Quercus lobata HOM05D007360 ORTHO05D008235 5.7e-06 57.4 276 24.6
Nn8g39876 Nelumbo nucifera HOM05D005497 ORTHO05D006733 7.5e-06 57.0 121 35.5
RcHm_v2.0_Chr3g0469001 Rosa chinensis HOM05D007360 ORTHO05D008235 7.5e-06 57.0 271 25.5
CANSAT80G1081 Cannabis sativa HOM05D003672 ORTHO05D004121 9.8e-06 56.6 612 22.9
CARHR205170 Cardamine hirsuta HOM05D003672 ORTHO05D004121 9.8e-06 56.6 211 28.0
FvH4_2g41090 Fragaria vesca HOM05D005497 ORTHO05D006733 9.8e-06 56.6 126 30.2
Sopen09g002350 Solanum pennellii HOM05D007360 ORTHO05D008235 9.8e-06 56.6 225 25.8
TWI74G1131 Tripterygium wilfordii HOM05D007360 ORTHO05D008235 9.8e-06 56.6 313 25.9
TWI81G0716 Tripterygium wilfordii HOM05D003672 ORTHO05D004121 9.8e-06 56.6 296 24.0


User provided reference genes

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