Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 3.9e-199 698.0 363 100.0
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 2.7e-83 313.2 385 45.5
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.7e-69 267.3 380 38.4
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 7.9e-67 258.5 379 40.9
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.2e-64 250.4 376 39.4
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 4.8e-64 249.2 380 37.1
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.0e-61 241.5 381 36.0
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 7.7e-46 188.7 379 34.8
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.3e-45 188.0 373 33.0
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 2.2e-45 187.2 374 33.4
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 2.9e-45 186.8 370 33.2
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 3.8e-45 186.4 375 31.7
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 5.0e-45 186.0 372 33.1
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 6.5e-45 185.7 372 33.1
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 8.5e-45 185.3 374 33.2
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 2.5e-44 183.7 371 34.0
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 2.5e-44 183.7 371 34.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 3.2e-44 183.3 372 32.3
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 3.2e-44 183.3 376 31.9
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 4.2e-44 183.0 370 32.7
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 4.2e-44 183.0 364 31.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 4.2e-44 183.0 367 33.2
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 9.4e-44 181.8 375 33.6
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 1.2e-43 181.4 374 33.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 1.6e-43 181.0 371 33.2
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 2.1e-43 180.6 368 33.2
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 2.1e-43 180.6 367 31.9
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 2.1e-43 180.6 374 32.1
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 3.6e-43 179.9 373 33.0
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.7e-43 179.5 375 32.0
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 6.1e-43 179.1 374 32.9
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 8.0e-43 178.7 369 32.5
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 1.4e-42 177.9 377 32.4
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.8e-42 177.6 374 32.4
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 2.3e-42 177.2 374 31.8
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 4.0e-42 176.4 375 31.7
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 4.0e-42 176.4 379 32.2
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 5.2e-42 176.0 373 32.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 5.2e-42 176.0 375 31.7
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 5.2e-42 176.0 371 32.3
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 6.7e-42 175.6 377 33.2
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 1.2e-41 174.9 377 34.0
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.6e-41 173.7 370 30.5
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 3.3e-41 173.3 373 32.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 3.3e-41 173.3 377 32.1
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.4e-41 172.9 370 30.3
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 5.7e-41 172.6 369 33.1
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 9.7e-41 171.8 370 32.4
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 1.7e-40 171.0 370 32.2
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 1.7e-40 171.0 366 33.3
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.2e-40 170.6 377 33.4
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 3.7e-40 169.9 371 31.5
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 3.7e-40 169.9 367 31.1
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 6.3e-40 169.1 369 31.7
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 6.3e-40 169.1 372 32.3
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 6.3e-40 169.1 378 32.8
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 6.3e-40 169.1 370 32.4
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 8.3e-40 168.7 370 31.6
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-39 168.3 377 31.8
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 1.1e-39 168.3 371 31.5
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 1.4e-39 167.9 323 31.9
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 1.4e-39 167.9 371 31.3
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-39 167.9 374 31.0
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-39 167.9 311 33.8
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 2.4e-39 167.2 373 31.9
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.4e-39 167.2 310 33.2
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.4e-39 167.2 369 33.3
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 3.1e-39 166.8 332 33.4
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 4.1e-39 166.4 340 33.5
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 4.1e-39 166.4 365 32.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 7.0e-39 165.6 408 30.1
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 7.0e-39 165.6 365 32.1
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 9.1e-39 165.2 366 32.2
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 9.1e-39 165.2 378 30.7
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 9.1e-39 165.2 368 29.9
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 1.2e-38 164.9 370 29.2
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 1.6e-38 164.5 375 29.9
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.6e-38 164.5 369 31.4
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 1.6e-38 164.5 362 31.5
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 2.0e-38 164.1 370 33.0
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 4.5e-38 162.9 374 29.9
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.0e-37 161.8 363 30.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.0e-37 161.8 382 32.5
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 1.3e-37 161.4 367 31.1
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 1.3e-37 161.4 398 29.6
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 1.7e-37 161.0 381 29.1
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.2e-37 160.6 347 33.4
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 2.2e-37 160.6 384 29.9
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 3.8e-37 159.8 315 33.3
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 8.5e-37 158.7 410 29.5
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.1e-36 158.3 371 29.1
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.5e-36 157.9 369 30.1
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 1.5e-36 157.9 369 29.8
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 1.5e-36 157.9 377 32.4
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 9.4e-36 155.2 373 28.2
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 9.4e-36 155.2 370 30.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 1.2e-35 154.8 371 29.1
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 2.7e-35 153.7 368 29.6
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 2.7e-35 153.7 369 29.0
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 4.7e-35 152.9 369 29.8
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 1.0e-34 151.8 382 30.4
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.4e-34 151.4 316 32.6
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.4e-34 151.4 372 28.0
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.4e-34 151.4 371 29.4
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 1.8e-34 151.0 372 28.8
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.8e-34 151.0 375 29.1
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 2.3e-34 150.6 382 28.5
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.3e-34 150.6 369 30.1
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 3.0e-34 150.2 361 29.4
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 5.2e-34 149.4 375 29.6
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.2e-34 149.4 360 29.7
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 5.2e-34 149.4 306 32.0
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 6.8e-34 149.1 375 29.1
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 6.8e-34 149.1 331 32.9
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 8.8e-34 148.7 310 31.9
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 2.6e-33 147.1 312 32.7
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 4.4e-33 146.4 359 29.2
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 9.8e-33 145.2 370 27.6
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 1.3e-32 144.8 312 31.1
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 1.7e-32 144.4 371 28.8
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 8.3e-32 142.1 370 27.0
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 8.3e-32 142.1 296 34.1
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 8.3e-32 142.1 389 27.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.3e-32 142.1 296 32.8
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 1.1e-31 141.7 370 27.6
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 1.4e-31 141.4 259 37.1
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 1.8e-31 141.0 359 29.2
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 1.8e-31 141.0 370 27.6
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 1.8e-31 141.0 385 28.3
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.8e-31 141.0 275 33.1
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 1.8e-31 141.0 373 27.3
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 3.1e-31 140.2 370 27.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 4.5e-30 136.3 297 30.3
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-30 136.3 512 26.6
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 4.5e-30 136.3 492 27.6
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.0e-29 132.9 373 28.4
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 5.0e-29 132.9 406 25.6
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 1.9e-28 131.0 368 27.4
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 3.3e-28 130.2 403 26.1
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 1.4e-26 124.8 212 35.4
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 9.8e-25 118.6 297 34.0
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 9.8e-25 118.6 212 34.0
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.7e-24 117.9 213 34.3
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 1.7e-24 117.9 163 41.1
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 1.1e-23 115.2 211 32.7
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 1.4e-23 114.8 211 32.7
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.8e-23 114.4 214 33.2
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 7.0e-23 112.5 161 38.5
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 1.2e-22 111.7 164 39.6
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 4.5e-22 109.8 174 39.1
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.5e-22 109.8 162 38.3
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 4.5e-22 109.8 164 39.6
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-21 108.2 164 39.0
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.7e-21 107.8 155 36.1
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 5.0e-21 106.3 301 28.9
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.6e-21 105.5 160 36.9
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.6e-20 102.8 162 38.3
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 3.6e-19 100.1 255 28.6
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.4e-18 98.2 123 41.5
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.1e-18 97.1 144 37.5
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 7.8e-14 82.4 190 29.5
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.3e-13 81.6 224 28.1
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 6.6e-13 79.3 194 26.8
Cfa024504 Carpinus fangiana HOM05D002209 ORTHO05D004761 1.1e-12 78.6 410 24.1
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.5e-12 78.2 194 26.8
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 2.5e-12 77.4 132 34.8
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.2e-11 75.1 128 37.5
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 3.1e-10 70.5 167 24.6
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 5.2e-10 69.7 130 32.3
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.0e-09 67.8 130 36.9
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 6.4e-08 62.8 158 28.5
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.6e-06 58.2 123 29.3


User provided reference genes

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