Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0251 Selaginella moellendorffii HOM05D010715 ORTHO05D015311 0.0e+00 2503.8 1304 100.0
Mapoly0054s0022 Marchantia polymorpha HOM05D010715 ORTHO05D015311 2.9e-159 567.4 941 39.0
CBR_g51474 Chara braunii HOM05D010715 ORTHO05D015311 4.2e-142 510.4 935 36.0
PRCOL_00000877 Prasinoderma coloniale HOM05D010715 ORTHO05D015311 3.6e-130 470.7 930 33.8
Cre09.g416550 Chlamydomonas reinhardtii HOM05D010715 ORTHO05D015311 1.0e-116 426.0 904 32.7
AagrBONN_evm.TU.Sc2ySwM_344.4904 Anthoceros agrestis HOM05D010715 ORTHO05D015311 3.0e-108 397.9 476 47.3
AagrBONN_evm.TU.Sc2ySwM_117.2801 Anthoceros agrestis HOM05D010715 ORTHO05D004951 3.3e-107 394.4 329 61.4
SMO268G0060 Selaginella moellendorffii HOM05D010715 ORTHO05D004951 2.1e-101 375.2 327 62.1
Pp3c11_8370 Physcomitrium patens HOM05D010715 ORTHO05D015311 1.0e-100 372.9 940 29.9
Mapoly0076s0064 Marchantia polymorpha HOM05D010715 ORTHO05D004951 1.1e-97 362.8 317 58.7
AagrBONN_evm.TU.Sc2ySwM_340.405 Anthoceros agrestis HOM05D010715 ORTHO05D004951 1.7e-87 328.9 340 52.9
Pp3c6_18570 Physcomitrium patens HOM05D010715 ORTHO05D015311 7.5e-67 260.4 669 30.9
MCO07G304 Micromonas commoda HOM05D010715 ORTHO05D015311 4.7e-61 241.1 702 25.9
Pp3c15_25880 Physcomitrium patens HOM05D010715 ORTHO05D004951 7.6e-35 154.1 133 63.2
AagrBONN_evm.TU.Sc2ySwM_117.391 Anthoceros agrestis HOM05D015939 ORTHO05D017293 1.5e-30 139.8 770 22.6
SMO364G0203 Selaginella moellendorffii HOM05D010715 ORTHO05D004951 1.5e-30 139.8 103 75.7
CBR_g8783 Chara braunii HOM05D015939 ORTHO05D017293 1.2e-29 136.7 779 22.8
PRCOL_00001175 Prasinoderma coloniale HOM05D015939 ORTHO05D017293 1.4e-28 133.3 806 21.5
MCO10G027 Micromonas commoda HOM05D015939 ORTHO05D017293 1.9e-25 122.9 796 22.6
Pp3c15_25890 Physcomitrium patens HOM05D010715 ORTHO05D015311 1.6e-24 119.8 160 41.2
Mapoly0035s0040 Marchantia polymorpha HOM05D015939 ORTHO05D017293 1.3e-23 116.7 817 21.4
Pp3c1_18270 Physcomitrium patens HOM05D015939 ORTHO05D017293 1.3e-23 116.7 539 25.0
Mapoly0052s0037 Marchantia polymorpha HOM05D015939 ORTHO05D017293 1.8e-20 106.3 828 21.4
Cre13.g584400 Chlamydomonas reinhardtii HOM05D015939 ORTHO05D017293 3.5e-16 92.0 775 21.3
AagrBONN_evm.TU.Sc2ySwM_344.4903 Anthoceros agrestis HOM05D010715 ORTHO05D015311 6.0e-16 91.3 278 28.4
Glyma.08G219900 Glycine max HOM05D006125 ORTHO05D007404 4.3e-14 85.1 72 54.2
Glyma.07G021900 Glycine max HOM05D006125 ORTHO05D007404 8.1e-13 80.9 74 50.0
Pp3c17_1000 Physcomitrium patens HOM05D015939 ORTHO05D017293 1.1e-12 80.5 736 22.3
Actinidia25476 Actinidia chinensis HOM05D006125 ORTHO05D007404 2.4e-12 79.3 78 47.4
QL07p030560 Quercus lobata HOM05D006125 ORTHO05D007404 2.4e-12 79.3 82 50.0
MBI14_g09098_MAGBIO Magnolia biondii HOM05D006125 ORTHO05D007404 3.1e-12 79.0 94 44.7
Prupe.2G074900 Prunus persica HOM05D006125 ORTHO05D007404 3.1e-12 79.0 74 45.9
QL07p031505 Quercus lobata HOM05D006125 ORTHO05D007404 4.0e-12 78.6 80 47.5
PSO782G1324 Papaver somniferum HOM05D006125 ORTHO05D007404 5.3e-12 78.2 56 58.9
Prupe.3G100100 Prunus persica HOM05D006125 ORTHO05D007404 5.3e-12 78.2 57 54.4
Zm00001eb176360 Zea mays HOM05D006125 ORTHO05D007404 6.9e-12 77.8 68 51.5
Ca_06644_v3 Cicer arietinum L. HOM05D006125 ORTHO05D007404 9.0e-12 77.4 68 51.5
Lj3g0014233 Lotus japonicus HOM05D006125 ORTHO05D007404 9.0e-12 77.4 68 51.5
MD17G1224400 Malus domestica HOM05D006125 ORTHO05D007404 9.0e-12 77.4 57 56.1
MD09G1225600 Malus domestica HOM05D006125 ORTHO05D007404 1.5e-11 76.6 57 56.1
RcHm_v2.0_Chr2g0132751 Rosa chinensis HOM05D006125 ORTHO05D007404 1.5e-11 76.6 57 56.1
Lalb_Chr04g0264571 Lupinus albus HOM05D006125 ORTHO05D007404 2.0e-11 76.3 54 59.3
Phvul.010G162500 Phaseolus vulgaris HOM05D006125 ORTHO05D007404 2.6e-11 75.9 68 51.5
CSS0032300 Camellia sinensis var. sinensis HOM05D006125 ORTHO05D007404 3.4e-11 75.5 57 54.4
Potri.001G043300 Populus trichocarpa HOM05D006125 ORTHO05D007404 3.4e-11 75.5 57 57.9
Actinidia18251 Actinidia chinensis HOM05D006125 ORTHO05D007404 4.5e-11 75.1 57 52.6
Ciclev10026865m.g Citrus clementina HOM05D006125 ORTHO05D007404 4.5e-11 75.1 68 50.0
TPR.G29449 Trifolium pratense HOM05D006125 ORTHO05D007404 4.5e-11 75.1 75 49.3
Atru.chr1.2788 Acer truncatum HOM05D006125 ORTHO05D007404 5.8e-11 74.7 57 52.6
Dinv21417 Davidia involucrata HOM05D006125 ORTHO05D007404 5.8e-11 74.7 79 45.6
Psat7g263200 Pisum sativum HOM05D006125 ORTHO05D007404 5.8e-11 74.7 72 50.0
Solyc03g117580.3 Solanum lycopersicum HOM05D006125 ORTHO05D007404 7.6e-11 74.3 79 46.8
Sopen03g036490 Solanum pennellii HOM05D006125 ORTHO05D007404 7.6e-11 74.3 79 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2882 Anthoceros agrestis HOM05D010715 ORTHO05D004951 9.9e-11 73.9 114 40.4
Manes.04G101402 Manihot esculenta HOM05D006125 ORTHO05D007404 9.9e-11 73.9 54 57.4
Manes.11G068700 Manihot esculenta HOM05D006125 ORTHO05D007404 9.9e-11 73.9 57 56.1
HPP92_003757 Vanilla planifolia HOM05D006125 ORTHO05D007404 9.9e-11 73.9 54 59.3
Medtr4g007290 Medicago truncatula HOM05D006125 ORTHO05D007404 1.3e-10 73.6 80 46.2
Os08g0272000 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.3e-10 73.6 54 55.6
Os12g0556400 Oryza sativa ssp. japonica HOM05D006125 ORTHO05D007404 1.3e-10 73.6 68 48.5
CiPaw.09G167300 Carya illinoinensis HOM05D006125 ORTHO05D007404 1.7e-10 73.2 68 48.5
SalBow7G4057 Salvia bowleyana HOM05D006125 ORTHO05D007404 1.7e-10 73.2 80 47.5
TWI12G0957 Tripterygium wilfordii HOM05D006125 ORTHO05D007404 1.7e-10 73.2 79 49.4
AL2G40490 Arabidopsis lyrata HOM05D006125 ORTHO05D007404 2.2e-10 72.8 71 47.9
Eucgr.J03118 Eucalyptus grandis HOM05D006125 ORTHO05D007404 2.2e-10 72.8 57 56.1
Nitab4.5_0002700g0200 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.2e-10 72.8 78 46.2
Nitab4.5_0009867g0040 Nicotiana tabacum HOM05D006125 ORTHO05D007404 2.2e-10 72.8 67 52.2
PGR031G3360 Punica granatum HOM05D006125 ORTHO05D007404 2.2e-10 72.8 57 54.4
PGR037G0004 Punica granatum HOM05D006125 ORTHO05D007404 2.2e-10 72.8 57 54.4
TAR383G0490 Trochodendron aralioides HOM05D006125 ORTHO05D007404 2.2e-10 72.8 54 55.6
Hma1.2p1_0329F.1_g127170 Hydrangea macrophylla HOM05D006125 ORTHO05D007404 2.9e-10 72.4 54 55.6
PGSC0003DMG400014151 Solanum tuberosum HOM05D006125 ORTHO05D007404 2.9e-10 72.4 67 52.2
ATR0580G075 Amborella trichopoda HOM05D006125 ORTHO05D007404 3.8e-10 72.0 68 51.5
CAN.G407.2 Capsicum annuum HOM05D006125 ORTHO05D007404 3.8e-10 72.0 53 64.2
Oeu009806.1 Olea europaea HOM05D006125 ORTHO05D007404 4.9e-10 71.6 79 44.3
unitig_62.g23831 Utricularia gibba HOM05D006125 ORTHO05D007404 4.9e-10 71.6 79 48.1
Gohir.D06G119100 Gossypium hirsutum HOM05D006125 ORTHO05D007404 6.4e-10 71.2 76 44.7
Sc12g0007910 Simmondsia chinensis HOM05D006125 ORTHO05D007404 8.4e-10 70.9 66 48.5
Gohir.A06G114500 Gossypium hirsutum HOM05D006125 ORTHO05D007404 1.1e-09 70.5 76 43.4
HanXRQChr05g0153751 Helianthus annuus HOM05D006125 ORTHO05D007404 1.1e-09 70.5 55 52.7
Sed0010339 Sechium edule HOM05D006125 ORTHO05D007404 1.1e-09 70.5 57 56.1
CANSAT56G2558 Cannabis sativa HOM05D006125 ORTHO05D007404 1.9e-09 69.7 57 50.9
arahy.Tifrunner.gnm1.ann1.CEK6A4 Arachis hypogaea HOM05D006125 ORTHO05D007404 2.4e-09 69.3 53 52.8
arahy.Tifrunner.gnm1.ann1.P1DY4U Arachis hypogaea HOM05D006125 ORTHO05D007404 2.4e-09 69.3 53 52.8
ClCG09G003380 Citrullus lanatus HOM05D006125 ORTHO05D007404 2.4e-09 69.3 57 54.4
Pp3c10_10990 Physcomitrium patens HOM05D006125 ORTHO05D007404 4.2e-09 68.6 56 50.0
Sed0014955 Sechium edule HOM05D006125 ORTHO05D007404 4.2e-09 68.6 57 52.6
Thecc.06G043200 Theobroma cacao HOM05D006125 ORTHO05D007404 4.2e-09 68.6 68 45.6
ECA246G3825 Erigeron canadensis HOM05D006125 ORTHO05D007404 5.5e-09 68.2 55 52.7
Duzib160G0610 Durio zibethinus HOM05D006125 ORTHO05D007404 7.1e-09 67.8 54 51.9
MELO3C023472.2 Cucumis melo HOM05D006125 ORTHO05D007404 9.3e-09 67.4 81 46.9
Cc04_g05190 Coffea canephora HOM05D006125 ORTHO05D007404 1.2e-08 67.0 53 52.8
Duzib235G1153 Durio zibethinus HOM05D006125 ORTHO05D007404 1.2e-08 67.0 57 47.4
Migut.I00687 Erythranthe guttata HOM05D006125 ORTHO05D007404 1.6e-08 66.6 84 42.9
AUR62034053 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.1e-08 66.2 46 56.5
FvH4_6g28500 Fragaria vesca HOM05D006125 ORTHO05D007404 2.1e-08 66.2 43 62.8
FAN05G4250 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.1e-08 66.2 43 62.8
FAN14G2502 Fragaria x ananassa HOM05D006125 ORTHO05D007404 2.1e-08 66.2 43 62.8
AUR62040628 Chenopodium quinoa HOM05D006125 ORTHO05D007404 2.7e-08 65.9 46 56.5
CARHR073580 Cardamine hirsuta HOM05D006125 ORTHO05D007404 1.0e-07 63.9 68 44.1
Gorai.010G136700 Gossypium raimondii HOM05D006125 ORTHO05D007404 1.0e-07 63.9 82 40.2
FAN02G1155 Fragaria x ananassa HOM05D006125 ORTHO05D007404 6.7e-07 61.2 42 59.5
Rhsim08G0204300 Rhododendron simsii HOM05D006125 ORTHO05D007404 1.9e-06 59.7 69 43.5
GSVIVG01015983001 Vitis vinifera HOM05D006125 ORTHO05D007404 2.5e-06 59.3 43 58.1
EL10Ac8g19423 Beta vulgaris HOM05D006125 ORTHO05D007404 4.3e-06 58.5 57 45.6
CBR_g24249 Chara braunii HOM05D006125 ORTHO05D007404 7.4e-06 57.8 53 52.8
Sabra01G0029800 Salix brachista HOM05D006125 ORTHO05D007404 7.4e-06 57.8 93 35.5


User provided reference genes

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