Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0140 Selaginella moellendorffii HOM05D003952 ORTHO05D005083 0.0e+00 2106.3 1064 100.0
MBI04_g08946_MAGBIO Magnolia biondii HOM05D003952 ORTHO05D005083 6.3e-306 1054.3 1176 49.9
Mapoly0019s0145 Marchantia polymorpha HOM05D003952 ORTHO05D005083 1.2e-304 1050.0 1189 50.0
Zm00001eb337600 Zea mays HOM05D003952 ORTHO05D005083 3.2e-302 1042.0 1172 50.1
Cfa018280 Carpinus fangiana HOM05D003952 ORTHO05D005083 6.7e-300 1034.2 1177 49.9
Haze_17805 Corylus avellana HOM05D003952 ORTHO05D005083 2.0e-299 1032.7 1177 50.0
QL02p038017 Quercus lobata HOM05D003952 ORTHO05D005083 7.5e-299 1030.8 1174 49.6
QL02p037499 Quercus lobata HOM05D003952 ORTHO05D005083 9.7e-299 1030.4 1174 49.6
Duzib093G1052 Durio zibethinus HOM05D003952 ORTHO05D005083 2.2e-298 1029.2 1175 49.7
CiPaw.15G012400 Carya illinoinensis HOM05D003952 ORTHO05D005083 3.7e-298 1028.5 1175 49.8
Os01g0182600 Oryza sativa ssp. japonica HOM05D003952 ORTHO05D005083 3.7e-298 1028.5 1169 49.6
Zm00001eb122110 Zea mays HOM05D003952 ORTHO05D005083 3.7e-298 1028.5 1172 49.5
ATR1120G094 Amborella trichopoda HOM05D003952 ORTHO05D005083 1.1e-297 1026.9 1146 50.1
MD10G1034200 Malus domestica HOM05D003952 ORTHO05D005083 1.1e-297 1026.9 1176 50.0
Prupe.8G040600 Prunus persica HOM05D003952 ORTHO05D005083 3.1e-297 1025.4 1176 49.7
Gohir.A02G062600 Gossypium hirsutum HOM05D003952 ORTHO05D005083 9.1e-297 1023.8 1160 50.0
Potri.005G196700 Populus trichocarpa HOM05D003952 ORTHO05D005083 1.2e-296 1023.5 1173 49.4
Thecc.08G159400 Theobroma cacao HOM05D003952 ORTHO05D005083 1.6e-296 1023.1 1175 49.4
THA.LOC104810466 Tarenaya hassleriana HOM05D003952 ORTHO05D005083 3.5e-296 1021.9 1167 49.2
FvH4_2g13030 Fragaria vesca HOM05D003952 ORTHO05D005083 4.5e-296 1021.5 1182 49.1
Cc10_g15270 Coffea canephora HOM05D003952 ORTHO05D005083 5.9e-296 1021.1 1172 49.6
TWI32G0799 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 5.9e-296 1021.1 1176 48.8
Gohir.D02G068200 Gossypium hirsutum HOM05D003952 ORTHO05D005083 2.2e-295 1019.2 1160 49.4
Gorai.005G077100 Gossypium raimondii HOM05D003952 ORTHO05D005083 3.8e-295 1018.5 1160 49.4
Nitab4.5_0000872g0040 Nicotiana tabacum HOM05D003952 ORTHO05D005083 5.0e-295 1018.1 1159 49.6
CSS0032669 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 6.5e-295 1017.7 1172 48.9
arahy.Tifrunner.gnm1.ann1.SZWP5S Arachis hypogaea HOM05D003952 ORTHO05D005083 8.5e-295 1017.3 1166 49.4
TWI34G1640 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 1.1e-294 1016.9 1173 49.1
Nn008s41421 Nelumbo nucifera HOM05D003952 ORTHO05D005083 3.2e-294 1015.4 1186 48.4
Aqoxy6G00415 Aquilegia oxysepala HOM05D003952 ORTHO05D005083 4.2e-294 1015.0 1178 49.1
Gohir.D05G248000 Gossypium hirsutum HOM05D003952 ORTHO05D005083 4.2e-294 1015.0 1175 49.2
Atru.chr13.2009 Acer truncatum HOM05D003952 ORTHO05D005083 5.5e-294 1014.6 1176 49.4
CSS0017406 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 5.5e-294 1014.6 1168 49.1
Gorai.009G258800 Gossypium raimondii HOM05D003952 ORTHO05D005083 7.2e-294 1014.2 1175 49.2
PGR042G0685 Punica granatum HOM05D003952 ORTHO05D005083 9.4e-294 1013.8 1179 49.5
MELO3C030034.2 Cucumis melo HOM05D003952 ORTHO05D005083 1.2e-293 1013.4 1176 49.5
Duzib116G0427 Durio zibethinus HOM05D003952 ORTHO05D005083 1.6e-293 1013.1 1174 48.4
Sed0019934 Sechium edule HOM05D003952 ORTHO05D005083 2.1e-293 1012.7 1176 49.1
HPP92_008686 Vanilla planifolia HOM05D003952 ORTHO05D005083 2.1e-293 1012.7 1173 48.7
TWI60G0338 Tripterygium wilfordii HOM05D003952 ORTHO05D005083 2.7e-293 1012.3 1174 48.5
HPP92_008674 Vanilla planifolia HOM05D003952 ORTHO05D005083 3.6e-293 1011.9 1173 48.3
Gohir.A05G246500 Gossypium hirsutum HOM05D003952 ORTHO05D005083 4.7e-293 1011.5 1175 49.1
TAR628G1191 Trochodendron aralioides HOM05D003952 ORTHO05D005083 6.1e-293 1011.1 1177 49.1
MD05G1033400 Malus domestica HOM05D003952 ORTHO05D005083 8.0e-293 1010.7 1176 49.1
RcHm_v2.0_Chr6g0274251 Rosa chinensis HOM05D003952 ORTHO05D005083 8.0e-293 1010.7 1185 48.6
AT1G22770 Arabidopsis thaliana HOM05D003952 ORTHO05D005083 1.4e-292 1010.0 1175 49.1
Lsat_1_v5_gn_6_101520 Lactuca sativa HOM05D003952 ORTHO05D005083 1.4e-292 1010.0 1137 50.5
A09p41970 Brassica napus HOM05D003952 ORTHO05D005083 1.8e-292 1009.6 1179 48.8
C05p21880 Brassica napus HOM05D003952 ORTHO05D005083 2.3e-292 1009.2 1178 48.6
CsaV3_6G005020 Cucumis sativus L. HOM05D003952 ORTHO05D005083 6.8e-292 1007.7 1176 49.2
CARHR023130 Cardamine hirsuta HOM05D003952 ORTHO05D005083 8.8e-292 1007.3 1168 49.2
Aa31LG7G6730 Aethionema arabicum HOM05D003952 ORTHO05D005083 1.2e-291 1006.9 1178 48.6
Sopen04g027970 Solanum pennellii HOM05D003952 ORTHO05D005083 1.2e-291 1006.9 1171 48.5
Solyc12g056650.2 Solanum lycopersicum HOM05D003952 ORTHO05D005083 1.5e-291 1006.5 1179 48.5
AL1G36320 Arabidopsis lyrata HOM05D003952 ORTHO05D005083 2.6e-291 1005.7 1175 49.0
Carub.0001s2228 Capsella rubella HOM05D003952 ORTHO05D005083 3.4e-291 1005.4 1174 48.7
Lalb_Chr02g0141571 Lupinus albus HOM05D003952 ORTHO05D005083 4.4e-291 1005.0 1169 48.5
Eucgr.F02686 Eucalyptus grandis HOM05D003952 ORTHO05D005083 5.7e-291 1004.6 1167 48.4
Sc20g0003770 Simmondsia chinensis HOM05D003952 ORTHO05D005083 5.7e-291 1004.6 1176 48.6
Sopen12g029310 Solanum pennellii HOM05D003952 ORTHO05D005083 5.7e-291 1004.6 1179 48.5
FAN15G1441 Fragaria x ananassa HOM05D003952 ORTHO05D005083 9.8e-291 1003.8 1216 47.9
MELO3C024067.2 Cucumis melo HOM05D003952 ORTHO05D005083 2.2e-290 1002.7 1174 48.3
Solyc04g071990.3 Solanum lycopersicum HOM05D003952 ORTHO05D005083 2.8e-290 1002.3 1175 48.2
CANSAT25G0323 Cannabis sativa HOM05D003952 ORTHO05D005083 3.7e-290 1001.9 1173 49.2
Thhalv10006603m.g Eutrema salsugineum HOM05D003952 ORTHO05D005083 3.7e-290 1001.9 1176 48.7
CAN.G495.15 Capsicum annuum HOM05D003952 ORTHO05D005083 4.8e-290 1001.5 1160 49.1
FAN27G2428 Fragaria x ananassa HOM05D003952 ORTHO05D005083 1.4e-289 1000.0 1222 47.6
CsaV3_7G024490 Cucumis sativus L. HOM05D003952 ORTHO05D005083 1.8e-289 999.6 1174 48.4
Peaxi162Scf00360g00418 Petunia axillaris HOM05D003952 ORTHO05D005083 2.4e-289 999.2 1171 48.3
Potri.002G064400 Populus trichocarpa HOM05D003952 ORTHO05D005083 2.4e-289 999.2 1173 48.2
Glyma.10G221500 Glycine max HOM05D003952 ORTHO05D005083 3.1e-289 998.8 1180 48.1
MSTRG.24931 Avicennia marina HOM05D003952 ORTHO05D005083 5.4e-289 998.0 1174 48.5
Nn5g28824 Nelumbo nucifera HOM05D003952 ORTHO05D005083 7.0e-289 997.7 1179 48.3
Nitab4.5_0004270g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 7.0e-289 997.7 1182 48.2
FAN24G3461 Fragaria x ananassa HOM05D003952 ORTHO05D005083 9.1e-289 997.3 1220 47.5
arahy.Tifrunner.gnm1.ann1.AF3FG0 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.2e-288 996.9 1198 48.0
FAN20G1325 Fragaria x ananassa HOM05D003952 ORTHO05D005083 2.0e-288 996.1 1220 47.5
Lj5g0005273 Lotus japonicus HOM05D003952 ORTHO05D005083 2.7e-288 995.7 1170 47.8
MSTRG.22108 Avicennia marina HOM05D003952 ORTHO05D005083 4.5e-288 995.0 1180 47.7
Migut.C00380 Erythranthe guttata HOM05D003952 ORTHO05D005083 4.5e-288 995.0 1153 49.3
SalBow7G2315 Salvia bowleyana HOM05D003952 ORTHO05D005083 7.7e-288 994.2 1177 48.7
Lalb_Chr06g0161721 Lupinus albus HOM05D003952 ORTHO05D005083 1.0e-287 993.8 1167 48.3
ECA246G0004 Erigeron canadensis HOM05D003952 ORTHO05D005083 3.8e-287 991.9 1142 48.7
DCAR_001164 Daucus carota HOM05D003952 ORTHO05D005083 6.5e-287 991.1 1172 48.2
Phvul.007G083500 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 6.5e-287 991.1 1198 47.5
ClCG08G007370 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.9e-286 989.6 1178 48.7
Sabra05G0149800 Salix brachista HOM05D003952 ORTHO05D005083 3.2e-286 988.8 1227 46.9
PSO170G5657 Papaver somniferum HOM05D003952 ORTHO05D005083 4.2e-286 988.4 1187 47.9
Sp1g20280 Schrenkiella parvula HOM05D003952 ORTHO05D005083 7.2e-286 987.6 1175 47.8
Rhsim11G0087700 Rhododendron simsii HOM05D003952 ORTHO05D005083 1.6e-285 986.5 1218 47.6
Migut.N02951 Erythranthe guttata HOM05D003952 ORTHO05D005083 2.1e-285 986.1 1165 47.7
vmacro01493 Vaccinium macrocarpon HOM05D003952 ORTHO05D005083 2.3e-284 982.6 1217 47.7
CAN.G26.47 Capsicum annuum HOM05D003952 ORTHO05D005083 3.0e-284 982.2 1180 47.6
HanXRQChr11g0320211 Helianthus annuus HOM05D003952 ORTHO05D005083 3.0e-284 982.2 1134 50.1
Medtr1g098160 Medicago truncatula HOM05D003952 ORTHO05D005083 3.0e-284 982.2 1178 47.7
Glyma.16G163200 Glycine max HOM05D003952 ORTHO05D005083 4.0e-284 981.9 1163 48.5
Nitab4.5_0000099g0200 Nicotiana tabacum HOM05D003952 ORTHO05D005083 4.0e-284 981.9 1204 47.3
SGA_v2.0_scaffold133G34641 Striga asiatica HOM05D003952 ORTHO05D005083 5.2e-284 981.5 1159 48.4
VMungo0720G2354 Vigna mungo HOM05D003952 ORTHO05D005083 4.4e-283 978.4 1198 47.4
EL10Ac1g01605 Beta vulgaris HOM05D003952 ORTHO05D005083 3.7e-282 975.3 1234 45.7
Sed0012183 Sechium edule HOM05D003952 ORTHO05D005083 3.7e-282 975.3 1177 47.2
AUR62034894 Chenopodium quinoa HOM05D003952 ORTHO05D005083 6.3e-282 974.5 1161 47.2
arahy.Tifrunner.gnm1.ann1.5NL3D9 Arachis hypogaea HOM05D003952 ORTHO05D005083 1.4e-281 973.4 1211 47.0
arahy.Tifrunner.gnm1.ann1.2T81X8 Arachis hypogaea HOM05D003952 ORTHO05D005083 2.4e-281 972.6 1211 47.2
Oeu051283.1 Olea europaea HOM05D003952 ORTHO05D005083 2.0e-280 969.5 1173 47.0
Phvul.004G088300 Phaseolus vulgaris HOM05D003952 ORTHO05D005083 1.1e-278 963.8 1168 47.3
Glyma.20G170000 Glycine max HOM05D003952 ORTHO05D005083 2.5e-278 962.6 1178 46.9
Oeu002069.1 Olea europaea HOM05D003952 ORTHO05D005083 5.6e-278 961.4 1212 45.8
Sabra02G0051500 Salix brachista HOM05D003952 ORTHO05D005083 9.5e-278 960.7 1233 45.4
Peaxi162Scf00160g01744 Petunia axillaris HOM05D003952 ORTHO05D005083 1.2e-275 953.7 1188 47.2
Lsat_1_v5_gn_9_42181 Lactuca sativa HOM05D003952 ORTHO05D005083 2.6e-275 952.6 1154 47.2
Ca_10663_v3 Cicer arietinum L. HOM05D003952 ORTHO05D005083 3.4e-275 952.2 1235 45.6
Lj7A383T43 Lonicera japonica HOM05D003952 ORTHO05D005083 4.4e-275 951.8 1155 48.1
TPR.G17028 Trifolium pratense HOM05D003952 ORTHO05D005083 2.9e-274 949.1 1157 47.2
ClCG09G010210 Citrullus lanatus HOM05D003952 ORTHO05D005083 1.8e-273 946.4 1154 47.7
Nitab4.5_0005673g0010 Nicotiana tabacum HOM05D003952 ORTHO05D005083 2.0e-272 943.0 1174 46.5
Psat6g190640 Pisum sativum HOM05D003952 ORTHO05D005083 2.8e-269 932.6 1059 49.3
AUR62026637 Chenopodium quinoa HOM05D003952 ORTHO05D005083 1.3e-263 913.7 1089 47.1
Ciclev10004044m.g Citrus clementina HOM05D003952 ORTHO05D005083 3.3e-262 909.1 1098 48.5
unitig_747.g21544 Utricularia gibba HOM05D003952 ORTHO05D005083 6.0e-256 888.3 1158 44.6
Manes.18G095000 Manihot esculenta HOM05D003952 ORTHO05D005083 1.2e-251 874.0 1058 48.9
Dinv25899 Davidia involucrata HOM05D003952 ORTHO05D005083 3.6e-245 852.4 956 49.5
Lalb_Chr01g0009771 Lupinus albus HOM05D003952 ORTHO05D005083 4.2e-241 839.0 957 48.8
Sed0012813 Sechium edule HOM05D003952 ORTHO05D005083 1.2e-240 837.4 956 50.0
CiPaw.16G008300 Carya illinoinensis HOM05D003952 ORTHO05D005083 1.9e-238 830.1 952 48.5
unitig_32.g11167 Utricularia gibba HOM05D003952 ORTHO05D005083 1.1e-230 804.3 1095 44.6
BcaNung06971 Brassica carinata HOM05D003952 ORTHO05D005083 1.3e-226 790.8 804 53.1
Ah.05g168180 Amaranthus hybridus HOM05D003952 ORTHO05D005083 2.4e-225 786.6 1064 44.5
SalBow6G3936 Salvia bowleyana HOM05D003952 ORTHO05D005083 1.1e-220 771.2 1072 43.8
Lj4C703T11 Lonicera japonica HOM05D003952 ORTHO05D005083 1.4e-199 701.0 930 45.7
GSVIVG01001406001 Vitis vinifera HOM05D003952 ORTHO05D005083 1.4e-199 701.0 546 64.3
COL.COLO4_13783 Corchorus olitorius HOM05D003952 ORTHO05D005083 1.3e-194 684.5 1041 42.3
CSS0023419 Camellia sinensis var. sinensis HOM05D003952 ORTHO05D005083 2.2e-189 667.2 977 42.4
PGSC0003DMG400018791 Solanum tuberosum HOM05D003952 ORTHO05D005083 3.5e-187 659.8 888 44.8
Actinidia29549 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.0e-178 631.7 972 40.9
CDE04G1363 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.1e-160 570.9 422 66.8
Oeu022058.1 Olea europaea HOM05D003952 ORTHO05D005083 3.3e-153 547.0 802 41.1
TAR381G0458 Trochodendron aralioides HOM05D003952 ORTHO05D005083 2.0e-150 537.7 811 41.6
VMungo0464G1608 Vigna mungo HOM05D003952 ORTHO05D005083 5.6e-145 519.6 795 40.9
AagrBONN_evm.TU.Sc2ySwM_117.1660 Anthoceros agrestis HOM05D003952 ORTHO05D005083 9.5e-137 492.3 775 40.3
VMungo0464G1293 Vigna mungo HOM05D003952 ORTHO05D005083 2.8e-128 464.2 359 64.9
Hma1.2p1_0678F.1_g202015 Hydrangea macrophylla HOM05D003952 ORTHO05D005083 1.4e-127 461.8 710 40.3
CDE04G2370 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 5.4e-124 449.9 708 40.8
CBR_g22347 Chara braunii HOM05D003952 ORTHO05D005083 8.1e-112 409.5 1313 29.6
Cpa.g.sc26.82 Carica papaya HOM05D003952 ORTHO05D005083 7.9e-107 392.9 605 40.7
TAR381G1674 Trochodendron aralioides HOM05D003952 ORTHO05D005083 7.9e-107 392.9 308 63.3
BraA09t39685Z Brassica rapa HOM05D003952 ORTHO05D005083 3.0e-106 391.0 309 63.4
BolC5t30883H Brassica oleracea HOM05D003952 ORTHO05D005083 5.1e-106 390.2 309 63.4
Psat7g241120 Pisum sativum HOM05D002716 ORTHO05D003324 1.7e-85 322.0 284 57.4
Actinidia04747 Actinidia chinensis HOM05D003952 ORTHO05D005083 1.8e-82 312.0 412 45.4
Cpa.g.sc26.81 Carica papaya HOM05D003952 ORTHO05D005083 8.5e-69 266.5 226 57.5
Lj4A703G54 Lonicera japonica HOM05D003952 ORTHO05D005083 8.3e-64 250.0 231 55.8
GSVIVG01001405001 Vitis vinifera HOM05D003952 ORTHO05D005083 7.5e-57 226.9 262 47.7
COL.COLO4_13782 Corchorus olitorius HOM05D003952 ORTHO05D005083 2.8e-56 224.9 179 62.0
Lsat_1_v5_gn_5_129380 Lactuca sativa HOM05D003952 ORTHO05D015589 9.1e-55 219.9 257 50.2
CDE04G3041 Ceratophyllum demersum HOM05D003952 ORTHO05D005083 2.3e-45 188.7 426 35.0
Lsat_1_v5_gn_3_78320 Lactuca sativa HOM05D003952 ORTHO05D005083 1.1e-44 186.4 123 76.4
Lsat_1_v5_gn_2_63220 Lactuca sativa HOM05D003952 ORTHO05D005083 5.6e-44 184.1 213 46.0
CANSAT25G0696 Cannabis sativa HOM05D003952 ORTHO05D005083 1.3e-40 172.9 116 76.7
Lsat_1_v5_gn_5_64561 Lactuca sativa HOM05D003952 ORTHO05D004515 4.1e-39 167.9 134 64.2
Sopen10g022170 Solanum pennellii HOM05D003952 ORTHO05D011221 1.0e-37 163.3 143 55.9
Lsat_1_v5_gn_8_75660 Lactuca sativa HOM05D003952 ORTHO05D005083 4.0e-34 151.4 187 45.5
Duzib041G0651 Durio zibethinus HOM05D003952 ORTHO05D005083 4.1e-31 141.4 92 78.3
HanXRQChr10g0278641 Helianthus annuus HOM05D003952 ORTHO05D005083 1.6e-30 139.4 202 43.6
Lalb_Chr01g0009781 Lupinus albus HOM05D003952 ORTHO05D005083 2.1e-27 129.0 179 45.3
CAN.G1225.1 Capsicum annuum HOM05D003952 ORTHO05D008201 4.0e-26 124.8 183 42.1
Psat0s2845g0120 Pisum sativum HOM05D004054 ORTHO05D004945 3.2e-15 88.6 78 59.0
Psat7g010640 Pisum sativum HOM05D003952 ORTHO05D037363 3.0e-13 82.0 93 48.4
Psat7g010720 Pisum sativum HOM05D003952 ORTHO05D037363 3.0e-13 82.0 93 48.4
Psat0s4455g0040 Pisum sativum HOM05D003952 ORTHO05D037363 6.6e-13 80.9 93 48.4
Psat5g166880 Pisum sativum HOM05D003952 ORTHO05D005083 1.1e-12 80.1 147 33.3
TPR.G25241 Trifolium pratense HOM05D003952 ORTHO05D048898 5.6e-12 77.8 55 60.0
Lsat_1_v5_gn_7_62680 Lactuca sativa HOM05D003952 ORTHO05D015589 2.1e-11 75.9 55 61.8
Lsat_1_v5_gn_3_73081 Lactuca sativa HOM05D003952 ORTHO05D015589 1.7e-08 66.2 79 48.1


User provided reference genes

Program Settings