Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0124 Selaginella moellendorffii HOM05D002437 ORTHO05D024869 9.2e-181 636.7 312 100.0
Pp3c1_18420 Physcomitrium patens HOM05D002437 ORTHO05D024869 1.5e-111 406.8 258 72.9
Mapoly0034s0092 Marchantia polymorpha HOM05D002437 ORTHO05D024869 1.2e-103 380.6 254 66.5
PRCOL_00003894 Prasinoderma coloniale HOM05D002437 ORTHO05D024869 7.8e-79 298.1 228 58.8
Cfa024049 Carpinus fangiana HOM05D002437 ORTHO05D024869 1.5e-29 134.4 205 37.1
MSTRG.13135 Avicennia marina HOM05D002437 ORTHO05D002831 8.4e-17 92.0 250 31.2
AUR62015802 Chenopodium quinoa HOM05D002437 ORTHO05D002831 1.1e-16 91.7 251 29.9
CSS0028007 Camellia sinensis var. sinensis HOM05D002437 ORTHO05D002831 3.2e-16 90.1 251 29.5
PGR083G1495 Punica granatum HOM05D002437 ORTHO05D002831 1.0e-14 85.1 275 29.1
vmacro22536 Vaccinium macrocarpon HOM05D002437 ORTHO05D002831 1.3e-14 84.7 250 30.0
CsaV3_6G048960 Cucumis sativus L. HOM05D002437 ORTHO05D002831 1.8e-14 84.3 256 28.5
AUR62020413 Chenopodium quinoa HOM05D002437 ORTHO05D002831 2.3e-14 84.0 214 30.8
Sed0008709 Sechium edule HOM05D002437 ORTHO05D002831 3.0e-14 83.6 250 28.4
CAN.G39.4 Capsicum annuum HOM05D002437 ORTHO05D002831 5.1e-14 82.8 270 27.8
ClCG01G021900 Citrullus lanatus HOM05D002437 ORTHO05D002831 5.1e-14 82.8 256 28.1
Nitab4.5_0006396g0020 Nicotiana tabacum HOM05D002437 ORTHO05D002831 5.1e-14 82.8 280 27.5
Actinidia05508 Actinidia chinensis HOM05D002437 ORTHO05D002831 8.7e-14 82.0 322 27.0
ATR0794G150 Amborella trichopoda HOM05D002437 ORTHO05D002831 8.7e-14 82.0 267 27.3
MD03G1198900 Malus domestica HOM05D002437 ORTHO05D002831 8.7e-14 82.0 251 29.1
PGR004G0026 Punica granatum HOM05D002437 ORTHO05D002831 8.7e-14 82.0 271 28.8
Nitab4.5_0002827g0080 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.5e-13 81.3 251 28.3
Nitab4.5_0000005g0310 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.9e-13 80.9 233 28.8
Nitab4.5_0004810g0010 Nicotiana tabacum HOM05D002437 ORTHO05D002831 1.9e-13 80.9 270 27.8
Psat1g179680 Pisum sativum HOM05D002437 ORTHO05D002831 1.9e-13 80.9 259 28.2
Prupe.4G019200 Prunus persica HOM05D002437 ORTHO05D002831 1.9e-13 80.9 265 29.4
Sc17g0007430 Simmondsia chinensis HOM05D002437 ORTHO05D002831 1.9e-13 80.9 281 27.0
Thhalv10023459m.g Eutrema salsugineum HOM05D002437 ORTHO05D002831 2.5e-13 80.5 281 28.5
Solyc02g080640.4 Solanum lycopersicum HOM05D002437 ORTHO05D002831 3.3e-13 80.1 250 28.0
Sopen02g011260 Solanum pennellii HOM05D002437 ORTHO05D002831 3.3e-13 80.1 214 30.4
Sopen02g025350 Solanum pennellii HOM05D002437 ORTHO05D002831 3.3e-13 80.1 250 28.0
PGSC0003DMG400016477 Solanum tuberosum HOM05D002437 ORTHO05D002831 3.3e-13 80.1 250 28.0
TWI38G2173 Tripterygium wilfordii HOM05D002437 ORTHO05D002831 3.3e-13 80.1 270 26.3
EL10Ac8g20074 Beta vulgaris HOM05D002437 ORTHO05D002831 4.3e-13 79.7 261 28.4
Peaxi162Scf00331g01129 Petunia axillaris HOM05D002437 ORTHO05D002831 4.3e-13 79.7 214 29.9
Hund21415 Selenicereus undatus HOM05D002437 ORTHO05D002831 5.7e-13 79.3 250 28.4
BcaB01g01819 Brassica carinata HOM05D002437 ORTHO05D002831 7.4e-13 79.0 279 26.5
BcaNung00820 Brassica carinata HOM05D002437 ORTHO05D002831 7.4e-13 79.0 261 29.1
A09p26210 Brassica napus HOM05D002437 ORTHO05D002831 7.4e-13 79.0 270 28.9
Duzib235G1449 Durio zibethinus HOM05D002437 ORTHO05D002831 7.4e-13 79.0 269 27.9
Eucgr.D01338 Eucalyptus grandis HOM05D002437 ORTHO05D002831 7.4e-13 79.0 271 28.8
Sed0011125 Sechium edule HOM05D002437 ORTHO05D002831 7.4e-13 79.0 250 28.0
Sc05g0009260 Simmondsia chinensis HOM05D002437 ORTHO05D002831 7.4e-13 79.0 263 28.1
Solyc02g032860.3 Solanum lycopersicum HOM05D002437 ORTHO05D002831 9.7e-13 78.6 214 30.4
CAN.G1014.3 Capsicum annuum HOM05D002437 ORTHO05D002831 1.3e-12 78.2 328 26.5
Glyma.09G004400 Glycine max HOM05D002437 ORTHO05D002831 1.3e-12 78.2 251 28.3
Peaxi162Scf00147g00511 Petunia axillaris HOM05D002437 ORTHO05D002831 1.3e-12 78.2 269 26.8
PGSC0003DMG400019872 Solanum tuberosum HOM05D002437 ORTHO05D002831 1.3e-12 78.2 214 30.4
TPR.G13455 Trifolium pratense HOM05D002437 ORTHO05D002831 1.3e-12 78.2 338 26.9
BolC7t45653H Brassica oleracea HOM05D002437 ORTHO05D002831 1.6e-12 77.8 261 28.7
Nn1g03490 Nelumbo nucifera HOM05D002437 ORTHO05D002831 1.6e-12 77.8 272 27.9
BraA09t38189Z Brassica rapa HOM05D002437 ORTHO05D002831 2.2e-12 77.4 270 28.5
Cc09_g01560 Coffea canephora HOM05D002437 ORTHO05D002831 2.2e-12 77.4 335 26.6
COL.COLO4_31790 Corchorus olitorius HOM05D002437 ORTHO05D002831 2.2e-12 77.4 265 27.2
Rhsim06G0218800 Rhododendron simsii HOM05D002437 ORTHO05D002831 2.2e-12 77.4 270 28.1
BcaNung01713 Brassica carinata HOM05D002437 ORTHO05D002831 2.8e-12 77.0 250 29.2
BraA03t14386Z Brassica rapa HOM05D002437 ORTHO05D002831 2.8e-12 77.0 263 28.5
Carub.0002s0287 Capsella rubella HOM05D002437 ORTHO05D002831 2.8e-12 77.0 291 28.2
Gohir.A06G148700 Gossypium hirsutum HOM05D002437 ORTHO05D002831 2.8e-12 77.0 267 28.1
Gorai.010G180900 Gossypium raimondii HOM05D002437 ORTHO05D002831 2.8e-12 77.0 250 27.6
Hma1.2p1_0673F.1_g201480 Hydrangea macrophylla HOM05D002437 ORTHO05D002831 2.8e-12 77.0 250 28.0
Nitab4.5_0007864g0060 Nicotiana tabacum HOM05D002437 ORTHO05D002831 2.8e-12 77.0 250 28.0
HPP92_010202 Vanilla planifolia HOM05D002437 ORTHO05D002831 2.8e-12 77.0 249 27.7
Zm00001eb322440 Zea mays HOM05D002437 ORTHO05D002831 2.8e-12 77.0 248 28.2
A03p53180 Brassica napus HOM05D002437 ORTHO05D002831 3.7e-12 76.6 268 28.4
Cpa.g.sc152.28 Carica papaya HOM05D002437 ORTHO05D002831 3.7e-12 76.6 250 28.4
Gohir.D06G154800 Gossypium hirsutum HOM05D002437 ORTHO05D002831 3.7e-12 76.6 265 27.2
Prupe.4G216100 Prunus persica HOM05D002437 ORTHO05D002831 3.7e-12 76.6 309 27.2
C07p51550 Brassica napus HOM05D002437 ORTHO05D002831 4.8e-12 76.3 261 28.4
Nn1g07167 Nelumbo nucifera HOM05D002437 ORTHO05D002831 4.8e-12 76.3 330 27.0
Zm00001eb105800 Zea mays HOM05D002437 ORTHO05D002831 4.8e-12 76.3 254 28.7
Gohir.A05G171200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 8.2e-12 75.5 308 26.3
Thecc.06G222500 Theobroma cacao HOM05D002437 ORTHO05D002831 8.2e-12 75.5 250 27.2
Os07g0509800 Oryza sativa ssp. japonica HOM05D002437 ORTHO05D002831 1.1e-11 75.1 248 28.6
Gohir.D05G174200 Gossypium hirsutum HOM05D002437 ORTHO05D002831 1.8e-11 74.3 307 25.1
Gorai.009G179500 Gossypium raimondii HOM05D002437 ORTHO05D002831 1.8e-11 74.3 308 26.0
CDE05G0940 Ceratophyllum demersum HOM05D002437 ORTHO05D002831 2.4e-11 73.9 214 29.4
Ah.09g234800 Amaranthus hybridus HOM05D002437 ORTHO05D002831 3.1e-11 73.6 314 26.4
Cpa.g.sc12.285 Carica papaya HOM05D002437 ORTHO05D002831 3.1e-11 73.6 274 27.4
Peaxi162Scf00306g00611 Petunia axillaris HOM05D002437 ORTHO05D002831 3.1e-11 73.6 291 26.1
ClCG03G004660 Citrullus lanatus HOM05D002437 ORTHO05D002831 9.0e-11 72.0 270 26.7
CsaV3_1G010690 Cucumis sativus L. HOM05D002437 ORTHO05D002831 1.5e-10 71.2 214 28.0
CDE02G3743 Ceratophyllum demersum HOM05D002437 ORTHO05D002831 3.4e-10 70.1 214 29.0
MELO3C002450.2 Cucumis melo HOM05D002437 ORTHO05D002831 3.4e-10 70.1 214 28.0
Ah.14g087980 Amaranthus hybridus HOM05D002437 ORTHO05D002831 4.5e-10 69.7 283 25.4
MD11G1215200 Malus domestica HOM05D002437 ORTHO05D002831 5.0e-09 66.2 248 27.0
SHI02214 Sapria himalayana HOM05D002437 ORTHO05D002831 7.9e-07 58.9 134 31.3


User provided reference genes

Program Settings