Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.1e-70 268.9 128 100.0
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 4.0e-66 254.6 128 96.1
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 6.0e-54 214.2 128 77.3
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 1.9e-52 209.1 125 79.2
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 9.6e-52 206.8 128 75.0
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 1.6e-51 206.1 128 76.6
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.6e-51 206.1 128 76.6
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.6e-51 206.1 128 76.6
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 2.1e-51 205.7 128 75.0
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 8.2e-51 203.8 128 75.0
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 1.1e-50 203.4 128 75.0
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 1.8e-50 202.6 128 75.8
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 1.8e-50 202.6 128 75.8
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 2.4e-50 202.2 128 75.8
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.4e-50 202.2 128 73.4
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 2.4e-50 202.2 128 75.8
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.4e-50 202.2 128 75.0
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 3.1e-50 201.8 125 76.8
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 3.1e-50 201.8 128 74.2
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 3.1e-50 201.8 128 74.2
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.1e-50 201.8 128 75.0
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 3.1e-50 201.8 128 75.0
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 3.1e-50 201.8 128 75.8
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 4.1e-50 201.4 128 74.2
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 4.1e-50 201.4 128 74.2
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 4.1e-50 201.4 128 75.8
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 4.1e-50 201.4 128 73.4
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 4.1e-50 201.4 128 74.2
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 5.3e-50 201.1 128 74.2
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.3e-50 201.1 128 74.2
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 5.3e-50 201.1 128 74.2
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 5.3e-50 201.1 128 74.2
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 74.2
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 73.4
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 74.2
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 74.2
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 73.4
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 73.4
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 6.9e-50 200.7 128 73.4
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.2e-49 199.9 128 75.0
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 1.2e-49 199.9 128 73.4
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 1.2e-49 199.9 128 72.7
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 1.2e-49 199.9 128 74.2
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.0e-49 199.1 128 72.7
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 2.0e-49 199.1 128 72.7
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 2.0e-49 199.1 128 72.7
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.0e-49 199.1 128 75.0
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 2.6e-49 198.7 128 72.7
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 2.6e-49 198.7 128 73.4
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 2.6e-49 198.7 128 73.4
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 3.4e-49 198.4 128 72.7
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 3.4e-49 198.4 128 74.2
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 3.4e-49 198.4 128 72.7
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 3.4e-49 198.4 128 73.4
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 4.5e-49 198.0 125 73.6
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 4.5e-49 198.0 128 73.4
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 7.6e-49 197.2 128 73.4
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 7.6e-49 197.2 128 72.7
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 7.6e-49 197.2 128 72.7
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 7.6e-49 197.2 128 71.9
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 7.6e-49 197.2 128 73.4
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 1.0e-48 196.8 128 74.2
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 1.0e-48 196.8 143 68.5
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 1.0e-48 196.8 128 72.7
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.3e-48 196.4 128 71.9
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 1.3e-48 196.4 128 72.7
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 1.7e-48 196.1 130 72.3
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 1.7e-48 196.1 128 71.9
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 1.7e-48 196.1 128 71.9
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 1.7e-48 196.1 128 72.7
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 2.2e-48 195.7 128 71.9
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.2e-48 195.7 128 72.7
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 2.9e-48 195.3 128 71.9
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 3.8e-48 194.9 128 72.7
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 3.8e-48 194.9 128 72.7
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 3.8e-48 194.9 128 70.3
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 5.0e-48 194.5 128 71.1
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 5.0e-48 194.5 128 71.1
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 6.5e-48 194.1 128 71.1
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 8.4e-48 193.7 128 71.1
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 8.4e-48 193.7 135 71.1
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 1.1e-47 193.4 136 70.6
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.1e-47 193.4 128 71.9
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 1.4e-47 193.0 128 70.3
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 1.4e-47 193.0 139 69.8
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 1.4e-47 193.0 135 70.4
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 1.4e-47 193.0 128 70.3
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 1.9e-47 192.6 128 70.3
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 1.9e-47 192.6 128 70.3
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 1.9e-47 192.6 128 71.1
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.9e-47 192.6 128 70.3
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.9e-47 192.6 128 70.3
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.9e-47 192.6 139 69.1
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 3.2e-47 191.8 128 70.3
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 4.2e-47 191.4 128 71.9
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 5.5e-47 191.0 128 70.3
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 7.1e-47 190.7 128 70.3
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 9.3e-47 190.3 128 70.3
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 9.3e-47 190.3 128 68.8
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 9.3e-47 190.3 128 68.8
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.5e-46 188.3 136 68.4
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 4.6e-46 188.0 133 69.9
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.6e-46 188.0 128 71.9
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 4.6e-46 188.0 128 71.9
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 6.1e-46 187.6 148 64.9
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 7.9e-46 187.2 132 69.7
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 1.3e-45 186.4 148 63.5
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.8e-45 186.0 137 74.5
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 68.8
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 68.8
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 69.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 68.8
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 68.8
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 6.7e-45 184.1 128 69.5
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-44 183.3 141 64.5
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.1e-44 183.3 141 64.5
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 1.1e-44 183.3 139 64.7
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 1.5e-44 183.0 124 69.4
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 2.5e-44 182.2 128 68.8
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 4.3e-44 181.4 125 67.2
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 5.7e-44 181.0 133 66.9
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.3e-43 179.9 131 67.9
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 6.3e-43 177.6 166 57.8
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 2.4e-42 175.6 128 68.0
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 3.2e-39 165.2 128 63.3
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.0e-37 160.2 128 57.0
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 3.9e-37 158.3 117 63.2
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 3.2e-31 138.7 128 57.8
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 7.4e-28 127.5 78 75.6
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 1.7e-27 126.3 125 56.0
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 1.8e-26 122.9 85 67.1
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 5.3e-26 121.3 78 71.8
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 1.2e-25 120.2 101 61.4
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 2.6e-25 119.0 128 50.0
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 3.5e-25 118.6 79 70.9
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.0e-24 117.1 116 55.2
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 5.0e-24 114.8 77 68.8
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.0e-17 92.8 43 97.7
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 2.9e-16 89.0 107 47.7
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 4.2e-15 85.1 79 55.7
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 7.2e-15 84.3 128 39.1
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 3.4e-12 75.5 47 72.3
CAN.G137.23 Capsicum annuum HOM05D004678 ORTHO05D000493 9.1e-10 67.4 44 72.7
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 1.6e-09 66.6 39 76.9


User provided reference genes

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