Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 6.2e-103 377.5 193 100.0
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.4e-43 177.6 205 47.8
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.4e-43 177.6 205 47.8
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 2.1e-42 176.4 193 47.2
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 1.5e-40 170.2 206 44.7
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 7.0e-38 161.4 177 44.6
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 1.9e-35 153.3 200 42.0
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 4.2e-35 152.1 196 42.3
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.2e-34 150.6 200 42.0
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 1.2e-34 150.6 200 41.5
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.6e-34 150.2 195 43.6
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 2.1e-34 149.8 196 40.8
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 2.1e-34 149.8 200 41.5
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 2.1e-34 149.8 196 42.9
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 2.1e-34 149.8 198 41.4
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 2.1e-34 149.8 198 41.4
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 2.8e-34 149.4 202 40.6
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 4.7e-34 148.7 202 40.6
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 4.7e-34 148.7 201 40.8
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 1.0e-33 147.5 202 40.6
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 1.0e-33 147.5 184 44.0
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 1.0e-33 147.5 194 43.3
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.4e-33 147.1 204 40.2
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.4e-33 147.1 204 40.2
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 1.8e-33 146.7 195 43.1
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 1.8e-33 146.7 192 42.7
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 2.3e-33 146.4 199 41.7
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 2.3e-33 146.4 202 41.6
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 3.0e-33 146.0 194 42.3
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 3.0e-33 146.0 199 42.2
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 3.0e-33 146.0 204 41.7
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 4.0e-33 145.6 202 42.1
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 4.0e-33 145.6 202 42.1
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 5.2e-33 145.2 199 41.2
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 5.2e-33 145.2 203 41.9
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 5.2e-33 145.2 194 41.8
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 6.8e-33 144.8 193 41.5
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 8.9e-33 144.4 199 41.7
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 8.9e-33 144.4 204 40.7
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 1.2e-32 144.1 198 40.9
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 1.2e-32 144.1 195 41.5
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 1.5e-32 143.7 196 42.3
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 1.5e-32 143.7 205 40.0
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 1.5e-32 143.7 191 42.9
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 2.6e-32 142.9 170 45.3
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 2.6e-32 142.9 193 41.5
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 2.6e-32 142.9 195 42.1
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 2.6e-32 142.9 204 41.7
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 3.4e-32 142.5 219 39.7
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 4.4e-32 142.1 201 40.8
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 5.7e-32 141.7 195 40.0
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 5.7e-32 141.7 198 41.4
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 5.7e-32 141.7 196 42.9
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 5.7e-32 141.7 196 40.3
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 7.5e-32 141.4 196 42.9
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 7.5e-32 141.4 197 40.6
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 9.8e-32 141.0 182 42.9
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 9.8e-32 141.0 185 42.7
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 9.8e-32 141.0 204 39.7
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 9.8e-32 141.0 197 41.6
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 1.3e-31 140.6 200 41.0
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 1.3e-31 140.6 196 40.8
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 1.3e-31 140.6 195 39.0
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.7e-31 140.2 195 42.1
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.7e-31 140.2 195 42.1
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.7e-31 140.2 194 41.8
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 1.7e-31 140.2 195 40.0
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 2.2e-31 139.8 196 42.3
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 2.2e-31 139.8 213 39.0
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 2.8e-31 139.4 205 40.0
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 3.7e-31 139.0 202 40.1
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 4.9e-31 138.7 201 39.3
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 4.9e-31 138.7 203 40.4
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 6.3e-31 138.3 196 42.3
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 8.3e-31 137.9 171 43.3
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 1.1e-30 137.5 202 40.1
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 1.1e-30 137.5 198 39.9
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.1e-30 137.5 204 40.2
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 1.4e-30 137.1 195 40.0
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 2.4e-30 136.3 196 39.8
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 3.2e-30 136.0 201 38.3
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 4.1e-30 135.6 209 36.4
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 5.4e-30 135.2 202 39.6
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 7.0e-30 134.8 196 39.8
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 7.0e-30 134.8 196 39.8
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 9.2e-30 134.4 202 38.6
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 9.2e-30 134.4 179 41.9
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 1.6e-29 133.7 214 39.3
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 1.6e-29 133.7 212 37.3
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.7e-29 132.9 195 37.9
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 2.7e-29 132.9 183 41.5
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 3.5e-29 132.5 179 40.8
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 4.6e-29 132.1 202 38.1
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 4.6e-29 132.1 179 40.8
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 5.9e-29 131.7 198 37.9
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 7.8e-29 131.3 208 38.5
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 2.3e-28 129.8 212 36.8
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 5.0e-28 128.6 194 38.1
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.5e-27 127.1 190 36.3
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 1.5e-27 127.1 190 36.3
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 2.5e-27 126.3 227 35.2
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 3.3e-27 125.9 227 35.2
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 3.3e-27 125.9 186 40.3
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 7.3e-27 124.8 229 34.9
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 9.5e-27 124.4 252 34.1
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.1e-26 123.2 223 35.0
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 2.8e-26 122.9 217 36.9
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 1.0e-25 120.9 200 36.5
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 1.8e-25 120.2 189 37.0
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 5.2e-25 118.6 243 34.2
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 5.2e-25 118.6 245 31.8
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.3e-23 114.0 237 32.9
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.1e-22 110.9 244 32.0
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 1.1e-22 110.9 132 45.5
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.4e-22 110.5 237 32.5
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 1.2e-21 107.5 222 33.3
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 1.6e-21 107.1 131 43.5
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 4.3e-19 99.0 195 34.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 3.6e-18 95.9 214 31.3
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.3e-12 76.6 70 54.3
PRCOL_00005055 Prasinoderma coloniale HOM05D006231 ORTHO05D007857 4.7e-10 68.9 165 29.7
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 3.1e-09 66.2 127 34.6
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 4.0e-09 65.9 129 32.6
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 3.4e-08 62.8 87 41.4
AUR62017796 Chenopodium quinoa HOM05D004023 ORTHO05D004681 1.9e-06 57.0 92 35.9
Ah.03g147260 Amaranthus hybridus HOM05D004023 ORTHO05D004681 7.1e-06 55.1 100 36.0
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 9.2e-06 54.7 82 36.6


User provided reference genes

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