Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 0.0e+00 1151.3 573 100.0
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 6.0e-162 575.1 603 52.4
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 6.0e-162 575.1 602 52.7
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 7.9e-162 574.7 584 51.9
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 5.6e-160 568.5 636 49.5
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 2.1e-159 566.6 602 52.2
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 6.9e-158 561.6 627 49.8
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 6.9e-158 561.6 594 50.3
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 2.6e-157 559.7 584 52.1
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 2.6e-157 559.7 582 52.1
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 4.5e-157 558.9 586 50.2
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 7.6e-157 558.1 631 48.2
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.7e-156 557.0 626 48.6
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 2.2e-156 556.6 577 51.6
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.2e-156 556.6 588 51.4
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 2.2e-156 556.6 621 49.8
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 2.9e-156 556.2 596 50.5
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 4.9e-156 555.4 594 51.0
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.4e-155 553.9 565 52.2
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.5e-155 553.1 624 49.8
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 2.5e-155 553.1 625 50.4
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 1.6e-154 550.4 618 50.5
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 2.1e-154 550.1 590 51.2
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 2.1e-154 550.1 650 48.0
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 4.6e-154 548.9 609 48.1
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 4.6e-154 548.9 650 48.0
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 6.0e-154 548.5 616 50.8
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 1.0e-153 547.7 622 48.9
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 1.0e-153 547.7 629 49.3
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.3e-153 547.4 608 50.5
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 1.3e-153 547.4 599 50.4
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 2.3e-153 546.6 615 50.4
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 2.3e-153 546.6 618 50.6
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 3.9e-153 545.8 632 49.2
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 8.7e-153 544.7 603 50.4
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 8.7e-153 544.7 615 49.4
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 8.7e-153 544.7 597 50.4
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 1.1e-152 544.3 640 47.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.5e-152 543.9 625 50.4
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.9e-152 543.5 608 50.2
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 2.5e-152 543.1 610 48.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 2.5e-152 543.1 598 51.5
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 3.3e-152 542.7 592 50.0
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 3.3e-152 542.7 561 51.3
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 5.7e-152 542.0 613 49.3
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 7.4e-152 541.6 629 48.6
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 1.3e-151 540.8 660 47.1
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 2.2e-151 540.0 610 48.4
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 2.2e-151 540.0 614 49.0
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 2.8e-151 539.7 611 49.4
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 2.8e-151 539.7 623 49.6
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 4.8e-151 538.9 613 48.1
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 8.2e-151 538.1 683 47.0
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 1.1e-150 537.7 628 48.2
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 1.4e-150 537.3 618 49.7
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 3.4e-149 532.7 628 48.6
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 1.0e-148 531.2 656 46.5
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 2.9e-148 529.6 609 49.3
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 5.0e-148 528.9 612 48.4
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 5.0e-148 528.9 619 47.2
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 5.0e-148 528.9 632 48.3
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.4e-147 527.3 612 48.7
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 7.2e-147 525.0 611 49.4
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 2.7e-146 523.1 626 46.5
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 7.9e-146 521.5 637 46.8
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 2.3e-145 520.0 641 46.5
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 3.9e-145 519.2 601 49.1
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 4.3e-144 515.8 643 46.7
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 5.7e-144 515.4 641 47.0
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 9.7e-144 514.6 526 52.3
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 3.7e-143 512.7 630 47.3
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 2.4e-142 510.0 580 48.3
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.2e-141 507.7 609 46.1
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 3.4e-141 506.1 628 47.0
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 1.3e-140 504.2 621 46.4
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 6.5e-140 501.9 584 50.0
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 5.5e-139 498.8 641 45.4
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 2.7e-138 496.5 583 46.8
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 7.9e-138 495.0 687 43.2
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 3.7e-135 486.1 608 45.4
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 1.5e-133 480.7 612 45.3
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 3.8e-132 476.1 616 46.3
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 7.2e-131 471.9 574 44.4
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 1.2e-130 471.1 626 45.7
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 2.3e-129 466.8 548 47.8
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 2.6e-125 453.4 607 42.7
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 3.6e-122 443.0 681 39.2
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 4.4e-120 436.0 587 42.9
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 5.2e-113 412.5 479 48.6
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 8.8e-113 411.8 425 53.2
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 2.0e-104 384.0 411 50.4
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 7.5e-104 382.1 436 49.8
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 3.6e-98 363.2 374 54.3
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 1.8e-97 360.9 282 65.2
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 4.3e-83 313.2 611 35.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 1.1e-81 308.5 473 40.8
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 1.2e-80 305.1 426 40.8
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 2.8e-74 283.9 256 58.2
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 1.1e-73 282.0 453 40.2
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.4e-73 280.8 300 51.0
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 8.4e-71 272.3 404 40.1
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 4.6e-69 266.5 246 58.1
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 8.7e-68 262.3 192 68.8
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.1e-66 257.7 243 58.8
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 3.4e-64 250.4 327 47.7
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 4.4e-64 250.0 366 42.3
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 2.7e-61 240.7 419 36.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 1.5e-59 235.0 234 54.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 5.6e-59 233.0 234 54.3
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 3.6e-58 230.3 285 47.0
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 1.1e-54 218.8 170 64.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 2.4e-54 217.6 183 62.3
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.3e-54 215.7 187 57.8
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 1.9e-51 208.0 177 58.2
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 9.6e-51 205.7 264 45.1
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.0e-48 198.0 181 59.7
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 3.8e-47 193.7 149 64.4
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.6e-42 178.3 292 36.0
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 5.1e-36 156.8 128 57.8
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 4.8e-34 150.2 395 30.6
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 4.1e-25 120.6 191 39.8
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.1e-19 102.4 102 51.0
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 2.2e-18 98.2 169 38.5
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 1.4e-17 95.5 146 45.2
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 7.0e-17 93.2 102 48.0
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 1.5e-16 92.0 96 45.8
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.7e-15 88.6 144 36.1
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 4.8e-10 70.5 81 45.7
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 6.3e-10 70.1 70 45.7
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 1.6e-08 65.5 80 42.5
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 2.2e-07 61.6 53 66.0
MCO01G357 Micromonas commoda HOM05D001481 ORTHO05D001865 3.2e-06 57.8 204 26.5


User provided reference genes

Program Settings