Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0860 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 3.7e-152 541.6 285 100.0
AagrBONN_evm.TU.Sc2ySwM_344.2052 Anthoceros agrestis HOM05D005959 ORTHO05D007263 2.3e-61 240.0 236 48.7
THA.LOC104823437 Tarenaya hassleriana HOM05D005959 ORTHO05D007263 2.2e-56 223.4 235 47.7
EL10Ac7g17275 Beta vulgaris HOM05D005959 ORTHO05D007263 3.8e-56 222.6 241 47.7
Peaxi162Scf00009g00079 Petunia axillaris HOM05D005959 ORTHO05D007263 3.8e-56 222.6 249 43.8
Lalb_Chr25g0289351 Lupinus albus HOM05D005959 ORTHO05D007263 4.9e-56 222.2 243 46.1
Mapoly0099s0026 Marchantia polymorpha HOM05D005959 ORTHO05D007263 6.4e-56 221.9 250 45.2
Nitab4.5_0000725g0200 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.9e-55 220.3 249 43.0
AagrBONN_evm.TU.Sc2ySwM_344.2577 Anthoceros agrestis HOM05D005959 ORTHO05D007263 2.5e-55 219.9 243 46.1
Migut.L01643 Erythranthe guttata HOM05D005959 ORTHO05D007263 3.2e-55 219.5 235 46.4
Potri.006G215700 Populus trichocarpa HOM05D005959 ORTHO05D007263 4.2e-55 219.2 243 45.3
BraA05t19827Z Brassica rapa HOM05D005959 ORTHO05D007263 5.5e-55 218.8 235 45.5
A05p08590 Brassica napus HOM05D005959 ORTHO05D007263 7.1e-55 218.4 235 45.5
CSS0020892 Camellia sinensis var. sinensis HOM05D005959 ORTHO05D007263 7.1e-55 218.4 237 46.0
Sopen10g035320 Solanum pennellii HOM05D005959 ORTHO05D007263 9.3e-55 218.0 245 42.4
Hma1.2p1_0111F.1_g053440 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 1.2e-54 217.6 237 45.1
Manes.08G000700 Manihot esculenta HOM05D005959 ORTHO05D007263 1.2e-54 217.6 249 44.6
PGSC0003DMG400017610 Solanum tuberosum HOM05D005959 ORTHO05D007263 1.2e-54 217.6 243 42.8
BcaC02g11852 Brassica carinata HOM05D005959 ORTHO05D007263 1.6e-54 217.2 235 45.1
A04p28510 Brassica napus HOM05D005959 ORTHO05D007263 1.6e-54 217.2 243 45.7
C04p10680 Brassica napus HOM05D005959 ORTHO05D007263 1.6e-54 217.2 235 45.1
BolC4t22661H Brassica oleracea HOM05D005959 ORTHO05D007263 1.6e-54 217.2 235 45.1
BraA04t18329Z Brassica rapa HOM05D005959 ORTHO05D007263 1.6e-54 217.2 243 45.7
CAN.G687.19 Capsicum annuum HOM05D005959 ORTHO05D007263 1.6e-54 217.2 241 43.6
Lj3A975G71 Lonicera japonica HOM05D005959 ORTHO05D007263 1.6e-54 217.2 241 44.4
Lj1g0020453 Lotus japonicus HOM05D005959 ORTHO05D007263 1.6e-54 217.2 243 45.7
PGR004G1166 Punica granatum HOM05D005959 ORTHO05D007263 1.6e-54 217.2 241 45.6
Solyc10g085950.2 Solanum lycopersicum HOM05D005959 ORTHO05D007263 1.6e-54 217.2 245 42.4
Ah.15g091970 Amaranthus hybridus HOM05D005959 ORTHO05D007263 2.1e-54 216.9 241 46.5
SGA_v2.0_scaffold94G28648 Striga asiatica HOM05D005959 ORTHO05D007263 2.1e-54 216.9 245 44.5
Cc06_g03270 Coffea canephora HOM05D005959 ORTHO05D007263 2.7e-54 216.5 241 44.4
Thhalv10017068m.g Eutrema salsugineum HOM05D005959 ORTHO05D007263 2.7e-54 216.5 235 46.0
MBI14_g34528_MAGBIO Magnolia biondii HOM05D005959 ORTHO05D007263 3.5e-54 216.1 235 45.5
Psat0s1952g0120 Pisum sativum HOM05D005959 ORTHO05D007263 3.5e-54 216.1 243 44.9
Hund12071 Selenicereus undatus HOM05D005959 ORTHO05D007263 3.5e-54 216.1 243 45.3
ATR0594G178 Amborella trichopoda HOM05D005959 ORTHO05D007263 4.6e-54 215.7 235 45.5
C04p65830 Brassica napus HOM05D005959 ORTHO05D007263 4.6e-54 215.7 243 45.3
Glyma.03G175800 Glycine max HOM05D005959 ORTHO05D007263 6.0e-54 215.3 243 44.9
Lalb_Chr20g0113031 Lupinus albus HOM05D005959 ORTHO05D007263 6.0e-54 215.3 237 44.3
Phvul.001G172900 Phaseolus vulgaris HOM05D005959 ORTHO05D007263 6.0e-54 215.3 243 45.7
BcaC02g07517 Brassica carinata HOM05D005959 ORTHO05D007263 7.9e-54 214.9 235 45.5
BolC4t28086H Brassica oleracea HOM05D005959 ORTHO05D007263 7.9e-54 214.9 235 45.5
Prupe.6G245600 Prunus persica HOM05D005959 ORTHO05D007263 7.9e-54 214.9 245 45.3
RcHm_v2.0_Chr3g0468051 Rosa chinensis HOM05D005959 ORTHO05D007263 7.9e-54 214.9 245 44.9
TPR.G21452 Trifolium pratense HOM05D005959 ORTHO05D007263 7.9e-54 214.9 243 44.4
AL4G33710 Arabidopsis lyrata HOM05D005959 ORTHO05D007263 1.0e-53 214.5 237 45.1
Ca_08807_v3 Cicer arietinum L. HOM05D005959 ORTHO05D007263 1.0e-53 214.5 243 44.9
Sc01g0003780 Simmondsia chinensis HOM05D005959 ORTHO05D007263 1.0e-53 214.5 241 44.8
TWI74G1319 Tripterygium wilfordii HOM05D005959 ORTHO05D007263 1.0e-53 214.5 245 45.3
Cfa017467 Carpinus fangiana HOM05D005959 ORTHO05D007263 1.3e-53 214.2 243 45.3
MELO3C009294.2 Cucumis melo HOM05D005959 ORTHO05D007263 1.3e-53 214.2 235 44.3
Medtr7g100160 Medicago truncatula HOM05D005959 ORTHO05D007263 1.3e-53 214.2 243 43.2
Os05g0119000 Oryza sativa ssp. japonica HOM05D005959 ORTHO05D007263 1.3e-53 214.2 247 43.3
Sed0012545 Sechium edule HOM05D005959 ORTHO05D007263 1.3e-53 214.2 232 43.5
CARHR132260 Cardamine hirsuta HOM05D005959 ORTHO05D007263 1.8e-53 213.8 235 45.1
CsaV3_3G035240 Cucumis sativus L. HOM05D005959 ORTHO05D007263 1.8e-53 213.8 235 43.8
Glyma.10G047100 Glycine max HOM05D005959 ORTHO05D007263 1.8e-53 213.8 235 45.1
Potri.016G082100 Populus trichocarpa HOM05D005959 ORTHO05D007263 1.8e-53 213.8 243 44.0
Carub.0004s1924 Capsella rubella HOM05D005959 ORTHO05D007263 2.3e-53 213.4 235 44.7
Ciclev10012473m.g Citrus clementina HOM05D005959 ORTHO05D007263 2.3e-53 213.4 235 44.7
DCAR_020866 Daucus carota HOM05D005959 ORTHO05D007263 2.3e-53 213.4 248 44.4
Rhsim05G0184400 Rhododendron simsii HOM05D005959 ORTHO05D007263 2.3e-53 213.4 245 44.9
Duzib106G1538 Durio zibethinus HOM05D005959 ORTHO05D007263 3.0e-53 213.0 249 43.4
MD12G1131100 Malus domestica HOM05D005959 ORTHO05D007263 3.9e-53 212.6 237 44.3
QL07p045958 Quercus lobata HOM05D005959 ORTHO05D007263 5.1e-53 212.2 242 45.5
Sp4g19650 Schrenkiella parvula HOM05D005959 ORTHO05D007263 5.1e-53 212.2 238 44.5
Eucgr.K03183 Eucalyptus grandis HOM05D005959 ORTHO05D007263 6.7e-53 211.8 235 44.3
Gohir.D04G117100 Gossypium hirsutum HOM05D005959 ORTHO05D007263 6.7e-53 211.8 249 43.4
Gorai.009G422000 Gossypium raimondii HOM05D005959 ORTHO05D007263 1.1e-52 211.1 243 44.0
Oeu026074.1 Olea europaea HOM05D005959 ORTHO05D007263 1.1e-52 211.1 241 41.9
Atru.chr8.2507 Acer truncatum HOM05D005959 ORTHO05D007263 1.5e-52 210.7 235 43.8
AT2G37330 Arabidopsis thaliana HOM05D005959 ORTHO05D007263 1.5e-52 210.7 237 44.7
arahy.Tifrunner.gnm1.ann1.R87Y2D Arachis hypogaea HOM05D005959 ORTHO05D007263 1.5e-52 210.7 235 45.1
Aa31LG5G22670 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.9e-52 210.3 235 44.3
MSTRG.26742 Avicennia marina HOM05D005959 ORTHO05D007263 1.9e-52 210.3 249 43.4
BcaB02g09288 Brassica carinata HOM05D005959 ORTHO05D007263 1.9e-52 210.3 235 44.7
CDE07G0433 Ceratophyllum demersum HOM05D005959 ORTHO05D007263 1.9e-52 210.3 243 43.6
FAN05G1034 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.9e-52 210.3 245 43.7
FAN09G4388 Fragaria x ananassa HOM05D005959 ORTHO05D007263 1.9e-52 210.3 245 43.7
Thecc.05G049500 Theobroma cacao HOM05D005959 ORTHO05D007263 1.9e-52 210.3 243 43.2
arahy.Tifrunner.gnm1.ann1.T45XFJ Arachis hypogaea HOM05D005959 ORTHO05D007263 2.5e-52 209.9 235 45.1
FvH4_6g14820 Fragaria vesca HOM05D005959 ORTHO05D007263 2.5e-52 209.9 245 43.3
Aqoxy2G00899 Aquilegia oxysepala HOM05D005959 ORTHO05D007263 3.3e-52 209.5 235 44.3
Eucgr.A01210 Eucalyptus grandis HOM05D005959 ORTHO05D007263 3.3e-52 209.5 235 44.7
FAN02G2849 Fragaria x ananassa HOM05D005959 ORTHO05D007263 3.3e-52 209.5 245 43.7
CANSAT80G1914 Cannabis sativa HOM05D005959 ORTHO05D007263 4.3e-52 209.1 237 44.3
Duzib093G0581 Durio zibethinus HOM05D005959 ORTHO05D007263 4.3e-52 209.1 249 43.4
unitig_578.g16043 Utricularia gibba HOM05D005959 ORTHO05D007263 4.3e-52 209.1 235 43.4
AagrBONN_evm.TU.Sc2ySwM_344.389 Anthoceros agrestis HOM05D005959 ORTHO05D007263 5.6e-52 208.8 235 45.1
FAN14G3394 Fragaria x ananassa HOM05D005959 ORTHO05D007263 7.4e-52 208.4 245 42.9
SEGI_41460 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 7.4e-52 208.4 241 42.7
ECA233G2168 Erigeron canadensis HOM05D005959 ORTHO05D007263 1.3e-51 207.6 243 43.2
MD04G1110300 Malus domestica HOM05D005959 ORTHO05D007263 1.3e-51 207.6 237 44.3
BcaB06g28984 Brassica carinata HOM05D005959 ORTHO05D007263 1.6e-51 207.2 235 43.0
Haze_20691 Corylus avellana HOM05D005959 ORTHO05D007263 2.8e-51 206.5 256 43.8
Sabra16G0089800 Salix brachista HOM05D005959 ORTHO05D007263 2.8e-51 206.5 243 43.6
Lj2A103T72 Lonicera japonica HOM05D005959 ORTHO05D007263 3.7e-51 206.1 235 44.3
PSO339G1263 Papaver somniferum HOM05D005959 ORTHO05D007263 3.7e-51 206.1 235 43.0
Pp3c20_6820 Physcomitrium patens HOM05D005959 ORTHO05D007263 4.8e-51 205.7 235 44.3
SMO271G0174 Selaginella moellendorffii HOM05D005959 ORTHO05D007263 4.8e-51 205.7 241 41.5
TAR623G1105 Trochodendron aralioides HOM05D005959 ORTHO05D007263 4.8e-51 205.7 235 43.4
Aa31LG5G22650 Aethionema arabicum HOM05D005959 ORTHO05D007263 8.2e-51 204.9 235 44.7
Lsat_1_v5_gn_6_33160 Lactuca sativa HOM05D005959 ORTHO05D007263 8.2e-51 204.9 235 42.6
CBR_g49882 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-50 204.5 247 42.9
Duzib128G1635 Durio zibethinus HOM05D005959 ORTHO05D007263 5.3e-50 202.2 249 41.8
PSO384G3658 Papaver somniferum HOM05D005959 ORTHO05D007263 9.0e-50 201.4 235 42.1
CiPaw.09G185300 Carya illinoinensis HOM05D005959 ORTHO05D007263 2.6e-49 199.9 225 44.9
HanXRQChr13g0399331 Helianthus annuus HOM05D005959 ORTHO05D007263 7.6e-49 198.4 235 41.7
HPP92_021201 Vanilla planifolia HOM05D005959 ORTHO05D007263 1.0e-48 198.0 237 39.7
Cpa.g.sc114.24 Carica papaya HOM05D005959 ORTHO05D007263 2.9e-48 196.4 228 43.9
Aa31LG5G22660 Aethionema arabicum HOM05D005959 ORTHO05D007263 1.9e-47 193.7 235 41.3
GSVIVG01025576001 Vitis vinifera HOM05D005959 ORTHO05D007263 1.9e-47 193.7 217 44.7
vmacro20093 Vaccinium macrocarpon HOM05D005959 ORTHO05D007263 1.6e-46 190.7 268 39.2
CBR_g3295 Chara braunii HOM05D005959 ORTHO05D007263 3.5e-46 189.5 238 42.4
Hma1.2p1_0111F.1_g053390 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 3.5e-46 189.5 243 41.2
Hma1.2p1_0111F.1_g053380 Hydrangea macrophylla HOM05D005959 ORTHO05D007263 5.1e-45 185.7 242 38.8
COL.COLO4_10311 Corchorus olitorius HOM05D005959 ORTHO05D007263 3.3e-44 183.0 197 45.2
AUR62041007 Chenopodium quinoa HOM05D005959 ORTHO05D007263 9.7e-44 181.4 241 41.1
Gohir.A04G077900 Gossypium hirsutum HOM05D005959 ORTHO05D007263 3.7e-43 179.5 270 38.5
Dinv35677 Davidia involucrata HOM05D005959 ORTHO05D007263 1.8e-42 177.2 187 45.5
SEGI_29713 Sequoiadendron giganteum HOM05D005959 ORTHO05D007263 4.5e-41 172.6 246 36.6
Actinidia05285 Actinidia chinensis HOM05D005959 ORTHO05D007263 2.3e-37 160.2 188 42.0
ClCG10G020740 Citrullus lanatus HOM05D005959 ORTHO05D007263 1.2e-33 147.9 146 46.6
Actinidia11237 Actinidia chinensis HOM05D005959 ORTHO05D007263 3.7e-27 126.3 152 44.1
Nn2g12822 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.2e-22 111.3 147 39.5
Nitab4.5_0002073g0040 Nicotiana tabacum HOM05D005959 ORTHO05D007263 1.2e-22 111.3 249 30.1
Cre16.g673000 Chlamydomonas reinhardtii HOM05D005959 ORTHO05D007263 3.7e-19 99.8 232 28.0
CDE04G1398 Ceratophyllum demersum HOM05D004061 ORTHO05D004693 1.3e-16 91.3 95 43.2
Actinidia19734 Actinidia chinensis HOM05D005959 ORTHO05D007263 1.7e-16 90.9 245 31.8
Nn5g28122 Nelumbo nucifera HOM05D005959 ORTHO05D007263 1.0e-13 81.6 69 53.6
Actinidia13264 Actinidia chinensis HOM05D005959 ORTHO05D007263 5.2e-13 79.3 96 41.7
Nn1g07598 Nelumbo nucifera HOM05D005959 ORTHO05D007263 4.4e-12 76.3 67 52.2
MD08G1090300 Malus domestica HOM05D005959 ORTHO05D007263 3.8e-08 63.2 118 35.6
Oeu004323.1 Olea europaea HOM05D005959 ORTHO05D007263 2.7e-06 57.0 42 57.1
TAR629G2669 Trochodendron aralioides HOM05D002023 ORTHO05D002049 8.0e-06 55.5 92 33.7


User provided reference genes

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