Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 5.6e-59 230.7 114 100.0
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 9.3e-22 107.1 104 48.1
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.5e-21 105.1 104 48.1
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.6e-21 104.8 104 51.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 4.6e-21 104.8 104 45.2
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 6.0e-21 104.4 104 46.2
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 7.8e-21 104.0 114 45.6
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.0e-20 103.6 104 47.1
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 1.3e-20 103.2 104 46.2
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.7e-20 102.8 104 46.2
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.3e-20 102.4 104 45.2
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 3.0e-20 102.1 104 48.1
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 3.0e-20 102.1 104 44.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 3.9e-20 101.7 104 45.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 3.9e-20 101.7 104 44.2
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 3.9e-20 101.7 104 45.2
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 5.1e-20 101.3 104 44.2
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 6.6e-20 100.9 104 43.3
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 6.6e-20 100.9 105 41.9
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.6e-20 100.9 104 44.2
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 6.6e-20 100.9 104 44.2
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 6.6e-20 100.9 104 45.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 8.7e-20 100.5 104 45.2
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 8.7e-20 100.5 104 44.2
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 8.7e-20 100.5 104 44.2
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 1.1e-19 100.1 104 44.2
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 46.2
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 45.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 43.3
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 47.1
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 44.2
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 1.5e-19 99.8 104 44.2
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.9e-19 99.4 104 44.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 1.9e-19 99.4 104 44.2
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.9e-19 99.4 104 44.2
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.9e-19 99.4 104 47.1
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 2.5e-19 99.0 104 44.2
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.5e-19 99.0 104 43.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 2.5e-19 99.0 104 44.2
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 43.3
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 43.3
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 43.3
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 44.2
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 44.2
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 43.3
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 43.3
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 3.3e-19 98.6 106 45.3
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 3.3e-19 98.6 104 41.3
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 4.3e-19 98.2 104 44.2
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 4.3e-19 98.2 104 42.3
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 5.6e-19 97.8 104 44.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 5.6e-19 97.8 104 44.2
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.6e-19 97.8 104 44.2
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 5.6e-19 97.8 104 44.2
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 5.6e-19 97.8 104 45.2
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 7.3e-19 97.4 104 44.2
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 7.3e-19 97.4 104 44.2
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 7.3e-19 97.4 104 43.3
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 7.3e-19 97.4 104 41.3
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 9.6e-19 97.1 104 42.3
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 9.6e-19 97.1 104 42.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 9.6e-19 97.1 106 43.4
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 9.6e-19 97.1 106 41.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 9.6e-19 97.1 104 43.3
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 1.3e-18 96.7 101 46.5
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.3e-18 96.7 104 45.2
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 1.3e-18 96.7 104 43.3
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 1.6e-18 96.3 104 43.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.6e-18 96.3 104 43.3
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.6e-18 96.3 104 43.3
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.6e-18 96.3 106 43.4
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.6e-18 96.3 104 42.3
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.6e-18 96.3 104 43.3
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.1e-18 95.9 104 41.3
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 2.8e-18 95.5 104 43.3
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 3.6e-18 95.1 106 44.3
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 4.8e-18 94.7 104 41.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 4.8e-18 94.7 104 41.3
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 4.8e-18 94.7 104 42.3
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 4.8e-18 94.7 106 43.4
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 6.2e-18 94.4 104 41.3
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 6.2e-18 94.4 104 41.3
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 6.2e-18 94.4 104 41.3
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 6.2e-18 94.4 104 41.3
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.2e-18 94.4 104 42.3
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 8.1e-18 94.0 104 43.3
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 8.1e-18 94.0 104 41.3
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 8.1e-18 94.0 104 41.3
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 8.1e-18 94.0 104 41.3
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 8.1e-18 94.0 106 43.4
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 8.1e-18 94.0 106 43.4
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 8.1e-18 94.0 104 41.3
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 1.1e-17 93.6 104 42.3
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 1.1e-17 93.6 104 41.3
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.1e-17 93.6 104 43.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.1e-17 93.6 106 42.5
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 1.4e-17 93.2 104 41.3
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.4e-17 93.2 104 43.3
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.8e-17 92.8 104 41.3
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.4e-17 92.4 104 40.4
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 5.3e-17 91.3 104 40.4
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.9e-17 90.9 104 43.3
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 1.2e-16 90.1 104 39.4
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 1.5e-16 89.7 104 40.4
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 1.5e-16 89.7 104 38.5
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 2.0e-16 89.4 92 45.7
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 2.0e-16 89.4 104 39.4
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-15 86.7 116 37.1
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 1.1e-14 83.6 109 38.5
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 1.1e-14 83.6 128 34.4
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.4e-14 83.2 113 40.7
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.2e-13 80.1 137 32.1
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 3.5e-13 78.6 109 37.6
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 3.5e-13 78.6 110 38.2
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 4.6e-13 78.2 112 36.6
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.3e-12 76.6 106 37.7
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 1.8e-12 76.3 79 44.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 5.1e-12 74.7 108 36.1
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 5.1e-12 74.7 121 35.5
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.1e-11 73.6 91 37.4
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.5e-11 72.4 79 39.2
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 4.3e-11 71.6 162 29.0
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 2.4e-09 65.9 77 40.3
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 3.1e-09 65.5 105 33.3
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 4.0e-09 65.1 151 26.5
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.5e-08 63.2 61 49.2
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 2.6e-08 62.4 70 44.3
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 2.6e-08 62.4 70 44.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 2.9e-07 58.9 66 45.5
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 1.1e-06 57.0 96 33.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 1.1e-06 57.0 197 23.4
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 2.4e-06 55.8 59 45.8
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.2e-06 55.5 101 30.7


User provided reference genes

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