Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0792 Selaginella moellendorffii HOM05D005285 ORTHO05D006829 1.7e-207 725.7 353 100.0
AagrBONN_evm.TU.Sc2ySwM_228.3236 Anthoceros agrestis HOM05D005285 ORTHO05D006829 1.8e-153 546.2 357 72.0
Mapoly0019s0106 Marchantia polymorpha HOM05D005285 ORTHO05D006829 3.0e-143 512.3 356 68.0
PSO339G1127 Papaver somniferum HOM05D005285 ORTHO05D006829 1.5e-142 510.0 363 65.3
GSVIVG01032048001 Vitis vinifera HOM05D005285 ORTHO05D006829 4.3e-142 508.4 359 65.7
THA.LOC104819060 Tarenaya hassleriana HOM05D005285 ORTHO05D006829 5.6e-142 508.1 356 65.4
Sp2g18470 Schrenkiella parvula HOM05D005285 ORTHO05D006829 2.8e-141 505.8 353 66.6
BcaC06g30830 Brassica carinata HOM05D005285 ORTHO05D006829 6.2e-141 504.6 353 66.3
A06p39410 Brassica napus HOM05D005285 ORTHO05D006829 8.1e-141 504.2 353 66.3
BraA06t26856Z Brassica rapa HOM05D005285 ORTHO05D006829 8.1e-141 504.2 353 66.3
PSO384G1382 Papaver somniferum HOM05D005285 ORTHO05D006829 8.1e-141 504.2 363 64.5
SEGI_06931 Sequoiadendron giganteum HOM05D005285 ORTHO05D006829 1.4e-140 503.4 371 64.7
ATR0605G013 Amborella trichopoda HOM05D005285 ORTHO05D006829 2.3e-140 502.7 363 64.2
AL8G20280 Arabidopsis lyrata HOM05D005285 ORTHO05D006829 2.3e-140 502.7 350 66.3
Duzib268G1126 Durio zibethinus HOM05D005285 ORTHO05D006829 3.1e-140 502.3 355 65.9
TAR636G1692 Trochodendron aralioides HOM05D005285 ORTHO05D006829 5.2e-140 501.5 359 64.9
COL.COLO4_23903 Corchorus olitorius HOM05D005285 ORTHO05D006829 6.8e-140 501.1 349 65.9
Aa31LG11G7560 Aethionema arabicum HOM05D005285 ORTHO05D006829 2.0e-139 499.6 356 65.7
Thhalv10004473m.g Eutrema salsugineum HOM05D005285 ORTHO05D006829 2.0e-139 499.6 353 66.0
BolC7t44405H Brassica oleracea HOM05D005285 ORTHO05D006829 2.6e-139 499.2 353 65.7
Actinidia20684 Actinidia chinensis HOM05D005285 ORTHO05D006829 5.8e-139 498.0 357 64.1
Carub.0008s0757 Capsella rubella HOM05D005285 ORTHO05D006829 5.8e-139 498.0 350 66.6
CDE04G1667 Ceratophyllum demersum HOM05D005285 ORTHO05D006829 5.8e-139 498.0 362 64.6
SalBow5G3836 Salvia bowleyana HOM05D005285 ORTHO05D006829 7.5e-139 497.7 356 64.3
Thecc.01G414500 Theobroma cacao HOM05D005285 ORTHO05D006829 7.5e-139 497.7 355 65.4
C07p38860 Brassica napus HOM05D005285 ORTHO05D006829 9.8e-139 497.3 353 65.7
CARHR184290 Cardamine hirsuta HOM05D005285 ORTHO05D006829 1.3e-138 496.9 350 66.3
FvH4_7g00610 Fragaria vesca HOM05D005285 ORTHO05D006829 1.7e-138 496.5 350 66.0
Psat4g195080 Pisum sativum HOM05D005285 ORTHO05D006829 1.7e-138 496.5 350 64.9
SalBow5G3096 Salvia bowleyana HOM05D005285 ORTHO05D006829 1.7e-138 496.5 356 64.0
CSS0013341 Camellia sinensis var. sinensis HOM05D005285 ORTHO05D006829 2.2e-138 496.1 358 64.0
FAN06G0391 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.2e-138 496.1 350 65.7
FAN10G3755 Fragaria x ananassa HOM05D005285 ORTHO05D006829 2.2e-138 496.1 350 66.0
Lj9A629T99 Lonicera japonica HOM05D005285 ORTHO05D006829 2.2e-138 496.1 353 64.6
MBI04_g14265_MAGBIO Magnolia biondii HOM05D005285 ORTHO05D006829 2.2e-138 496.1 354 66.4
AT5G48020 Arabidopsis thaliana HOM05D005285 ORTHO05D006829 2.9e-138 495.7 350 65.7
Migut.B01343 Erythranthe guttata HOM05D005285 ORTHO05D006829 3.7e-138 495.4 356 64.3
Nn7g36086 Nelumbo nucifera HOM05D005285 ORTHO05D006829 4.9e-138 495.0 360 64.4
PGR044G0372 Punica granatum HOM05D005285 ORTHO05D006829 4.9e-138 495.0 359 64.3
FAN03G1002 Fragaria x ananassa HOM05D005285 ORTHO05D006829 6.4e-138 494.6 352 64.8
Aqoxy2G00109 Aquilegia oxysepala HOM05D005285 ORTHO05D006829 8.3e-138 494.2 357 64.1
SGA_v2.0_scaffold646G53323 Striga asiatica HOM05D005285 ORTHO05D006829 8.3e-138 494.2 353 65.2
Zm00001eb189240 Zea mays HOM05D005285 ORTHO05D006829 8.3e-138 494.2 353 65.4
Gohir.D08G037700 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.1e-137 493.8 357 64.1
Gohir.A08G026900 Gossypium hirsutum HOM05D005285 ORTHO05D006829 1.4e-137 493.4 357 63.9
Cpa.g.sc234.2 Carica papaya HOM05D005285 ORTHO05D006829 1.9e-137 493.0 359 64.1
TWI09G0675 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 1.9e-137 493.0 357 63.6
Glyma.12G239400 Glycine max HOM05D005285 ORTHO05D006829 2.4e-137 492.7 350 64.6
Gorai.004G035700 Gossypium raimondii HOM05D005285 ORTHO05D006829 2.4e-137 492.7 357 63.9
DCAR_029637 Daucus carota HOM05D005285 ORTHO05D006829 3.2e-137 492.3 352 64.5
Ciclev10031943m.g Citrus clementina HOM05D005285 ORTHO05D006829 4.1e-137 491.9 350 64.3
Nitab4.5_0002012g0040 Nicotiana tabacum HOM05D005285 ORTHO05D006829 4.1e-137 491.9 350 64.6
VMungo1127G2059 Vigna mungo HOM05D005285 ORTHO05D006829 4.1e-137 491.9 350 65.1
Dinv09380 Davidia involucrata HOM05D005285 ORTHO05D006829 5.4e-137 491.5 359 62.4
ECA248G0026 Erigeron canadensis HOM05D005285 ORTHO05D006829 5.4e-137 491.5 350 63.4
MD07G1005600 Malus domestica HOM05D005285 ORTHO05D006829 5.4e-137 491.5 350 66.0
arahy.Tifrunner.gnm1.ann1.DICK3U Arachis hypogaea HOM05D005285 ORTHO05D006829 7.1e-137 491.1 350 65.1
ClCG10G012540 Citrullus lanatus HOM05D005285 ORTHO05D006829 7.1e-137 491.1 356 64.6
Phvul.011G213800 Phaseolus vulgaris HOM05D005285 ORTHO05D006829 7.1e-137 491.1 350 64.6
Hund03676 Selenicereus undatus HOM05D005285 ORTHO05D006829 9.2e-137 490.7 344 65.1
EL10Ac2g04308 Beta vulgaris HOM05D005285 ORTHO05D006829 1.2e-136 490.3 349 63.0
Ca_23856_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-136 490.3 350 64.6
FAN01G1197 Fragaria x ananassa HOM05D005285 ORTHO05D006829 1.2e-136 490.3 350 64.9
Medtr8g036165 Medicago truncatula HOM05D005285 ORTHO05D006829 1.2e-136 490.3 350 64.3
AUR62023050 Chenopodium quinoa HOM05D005285 ORTHO05D006829 1.6e-136 490.0 348 65.2
Lj3g0011351 Lotus japonicus HOM05D005285 ORTHO05D006829 1.6e-136 490.0 350 64.0
Os02g0717500 Oryza sativa ssp. japonica HOM05D005285 ORTHO05D006829 2.1e-136 489.6 353 64.6
Rhsim01G0131200 Rhododendron simsii HOM05D005285 ORTHO05D006829 2.1e-136 489.6 364 61.8
QL04p004838 Quercus lobata HOM05D005285 ORTHO05D006829 2.7e-136 489.2 355 64.8
Sopen10g011740 Solanum pennellii HOM05D005285 ORTHO05D006829 2.7e-136 489.2 350 64.9
Eucgr.J01257 Eucalyptus grandis HOM05D005285 ORTHO05D006829 3.5e-136 488.8 360 63.6
MD02G1316300 Malus domestica HOM05D005285 ORTHO05D006829 3.5e-136 488.8 350 65.4
Sed0014745 Sechium edule HOM05D005285 ORTHO05D006829 3.5e-136 488.8 356 64.0
Oeu064272.1 Olea europaea HOM05D005285 ORTHO05D006829 4.6e-136 488.4 352 64.5
RcHm_v2.0_Chr1g0314801 Rosa chinensis HOM05D005285 ORTHO05D006829 4.6e-136 488.4 350 64.6
Nitab4.5_0000050g0030 Nicotiana tabacum HOM05D005285 ORTHO05D006829 6.0e-136 488.0 350 64.3
Haze_03242 Corylus avellana HOM05D005285 ORTHO05D006829 7.8e-136 487.6 359 63.5
Lsat_1_v5_gn_1_109141 Lactuca sativa HOM05D005285 ORTHO05D006829 1.3e-135 486.9 355 62.0
Potri.001G271100 Populus trichocarpa HOM05D005285 ORTHO05D006829 1.7e-135 486.5 362 63.0
CsaV3_3G032330 Cucumis sativus L. HOM05D005285 ORTHO05D006829 6.6e-135 484.6 356 63.8
MELO3C023957.2 Cucumis melo HOM05D005285 ORTHO05D006829 8.6e-135 484.2 356 64.0
Peaxi162Scf00042g00510 Petunia axillaris HOM05D005285 ORTHO05D006829 1.1e-134 483.8 352 63.4
unitig_26.g9596 Utricularia gibba HOM05D005285 ORTHO05D006829 1.5e-134 483.4 352 63.6
Cfa010729 Carpinus fangiana HOM05D005285 ORTHO05D006829 1.9e-134 483.0 359 63.0
MSTRG.20606 Avicennia marina HOM05D005285 ORTHO05D006829 2.5e-134 482.6 358 62.3
Hund03675 Selenicereus undatus HOM05D005285 ORTHO05D006829 2.5e-134 482.6 383 59.5
TWI53G0546 Tripterygium wilfordii HOM05D005285 ORTHO05D006829 3.3e-134 482.3 356 62.6
Lalb_Chr03g0033921 Lupinus albus HOM05D005285 ORTHO05D006829 9.5e-134 480.7 353 62.3
Manes.10G147800 Manihot esculenta HOM05D005285 ORTHO05D006829 2.1e-133 479.6 362 62.2
Cc02_g27470 Coffea canephora HOM05D005285 ORTHO05D006829 4.7e-133 478.4 357 62.7
CANSAT21G0587 Cannabis sativa HOM05D005285 ORTHO05D006829 4.0e-132 475.3 350 63.1
Oeu039102.1 Olea europaea HOM05D005285 ORTHO05D006829 4.0e-132 475.3 356 61.5
Hma1.2p1_1011F.1_g247500 Hydrangea macrophylla HOM05D005285 ORTHO05D006829 1.5e-131 473.4 384 57.8
Eucgr.J01254 Eucalyptus grandis HOM05D005285 ORTHO05D006829 4.4e-131 471.9 360 60.8
Eucgr.J01253 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.8e-131 471.5 360 60.6
Eucgr.J01256 Eucalyptus grandis HOM05D005285 ORTHO05D006829 5.8e-131 471.5 360 60.6
AUR62009369 Chenopodium quinoa HOM05D005285 ORTHO05D006829 2.2e-130 469.5 326 65.6
ECA248G2079 Erigeron canadensis HOM05D005285 ORTHO05D006829 1.2e-128 463.8 355 60.3
HanXRQChr11g0330581 Helianthus annuus HOM05D005285 ORTHO05D006829 2.3e-127 459.5 355 58.9
Pp3c17_23530 Physcomitrium patens HOM05D005285 ORTHO05D006829 5.1e-127 458.4 384 60.2
Lj9C629T1 Lonicera japonica HOM05D005285 ORTHO05D006829 6.6e-127 458.0 351 61.5
ECA248G2524 Erigeron canadensis HOM05D005285 ORTHO05D006829 8.6e-127 457.6 354 59.3
FAN01G1198 Fragaria x ananassa HOM05D005285 ORTHO05D006829 7.3e-126 454.5 442 51.8
Lsat_1_v5_gn_1_111020 Lactuca sativa HOM05D005285 ORTHO05D006829 1.2e-125 453.8 355 58.9
QL04p004868 Quercus lobata HOM05D005285 ORTHO05D006829 3.6e-125 452.2 359 58.8
vmacro21170 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 1.1e-124 450.7 411 54.5
QL04p004878 Quercus lobata HOM05D005285 ORTHO05D006829 1.8e-124 449.9 359 58.8
HanXRQChr11g0330561 Helianthus annuus HOM05D005285 ORTHO05D006829 6.9e-124 448.0 352 58.0
Atru.chr11.2010 Acer truncatum HOM05D005285 ORTHO05D006829 8.9e-124 447.6 348 60.3
Sabra16G0166500 Salix brachista HOM05D005285 ORTHO05D006829 5.8e-123 444.9 433 52.4
SGA_v2.0_scaffold646G53324 Striga asiatica HOM05D005285 ORTHO05D006829 3.8e-122 442.2 449 49.7
QL04p004849 Quercus lobata HOM05D005285 ORTHO05D006829 6.0e-120 434.9 359 57.1
Atru.chr11.2632 Acer truncatum HOM05D005285 ORTHO05D006829 2.7e-112 409.5 384 54.9
SHI04065 Sapria himalayana HOM05D000259 ORTHO05D000155 3.9e-111 405.6 518 42.7
Prupe.2G008000 Prunus persica HOM05D005285 ORTHO05D006829 9.6e-110 401.0 269 68.0
Cre13.g586400 Chlamydomonas reinhardtii HOM05D005285 ORTHO05D006829 1.4e-105 387.1 349 53.6
Pp3c14_26250 Physcomitrium patens HOM05D005285 ORTHO05D006829 7.9e-104 381.3 302 60.3
HPP92_022786 Vanilla planifolia HOM05D005285 ORTHO05D006829 2.3e-103 379.8 273 66.3
Prupe.2G008200 Prunus persica HOM05D005285 ORTHO05D006829 5.6e-102 375.2 250 68.0
Sc11g0009350 Simmondsia chinensis HOM05D005285 ORTHO05D006829 7.4e-102 374.8 270 64.1
Sed0008744 Sechium edule HOM05D005285 ORTHO05D006829 3.8e-98 362.5 346 54.6
Ca_24082_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 3.3e-94 349.4 343 50.4
Lsat_1_v5_gn_1_72821 Lactuca sativa HOM05D005285 ORTHO05D006829 3.6e-88 329.3 345 47.0
HanXRQChr11g0330591 Helianthus annuus HOM05D005285 ORTHO05D006829 8.2e-69 265.0 223 53.4
Solyc10g037950.2 Solanum lycopersicum HOM05D005285 ORTHO05D006829 8.2e-69 265.0 194 62.4
HanXRQChr01g0017351 Helianthus annuus HOM05D005285 ORTHO05D006829 4.2e-65 252.7 175 66.3
arahy.Tifrunner.gnm1.ann1.A7HRCY Arachis hypogaea HOM05D005285 ORTHO05D006829 4.0e-63 246.1 268 47.0
TPR.G21737 Trifolium pratense HOM05D005285 ORTHO05D006829 2.0e-62 243.8 161 70.2
Ca_24079_v3 Cicer arietinum L. HOM05D005285 ORTHO05D006829 1.2e-59 234.6 350 39.7
TPR.G21746 Trifolium pratense HOM05D005285 ORTHO05D006829 7.7e-59 231.9 177 56.5
Solyc10g037960.3 Solanum lycopersicum HOM05D005285 ORTHO05D006829 1.3e-58 231.1 157 67.5
Eucgr.L03705 Eucalyptus grandis HOM05D005285 ORTHO05D006829 6.5e-58 228.8 175 62.3
Cpa.g.sc2760.1 Carica papaya HOM05D005285 ORTHO05D006829 3.2e-49 199.9 174 51.1
Rhsim06G0016300 Rhododendron simsii HOM05D005285 ORTHO05D006829 4.3e-41 172.9 112 67.0
HanXRQChr11g0330601 Helianthus annuus HOM05D005285 ORTHO05D006829 1.2e-38 164.9 106 69.8
Peaxi162Scf00451g00621 Petunia axillaris HOM05D005285 ORTHO05D006829 1.9e-33 147.5 166 48.2
Actinidia21565 Actinidia chinensis HOM05D005285 ORTHO05D006829 8.1e-24 115.5 102 56.9
Oeu039103.1 Olea europaea HOM05D005285 ORTHO05D008854 1.4e-23 114.8 88 60.2
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 7.1e-20 102.4 160 41.2
Oeu039101.1 Olea europaea HOM05D000288 ORTHO05D000173 2.3e-18 97.4 88 51.1
vmacro21176 Vaccinium macrocarpon HOM05D005285 ORTHO05D006829 6.8e-15 85.9 57 66.7
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 2.6e-14 84.0 55 65.5
TPR.G13313 Trifolium pratense HOM05D005285 ORTHO05D413460 4.4e-14 83.2 77 54.5
arahy.Tifrunner.gnm1.ann1.J91U4H Arachis hypogaea HOM05D000001 ORTHO05D004533 2.2e-13 80.9 62 56.5
CDE07G0090 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.2e-11 75.1 225 25.3
ATR0661G511 Amborella trichopoda HOM05D000018 ORTHO05D006467 2.1e-11 74.3 198 24.7
Lsat_1_v5_gn_0_6420 Lactuca sativa HOM05D002112 ORTHO05D007960 1.0e-10 72.0 83 43.4
arahy.Tifrunner.gnm1.ann1.43BKZS Arachis hypogaea HOM05D000001 ORTHO05D000003 2.3e-10 70.9 52 61.5
TPR.G1074 Trifolium pratense HOM05D005285 ORTHO05D411165 1.4e-07 61.6 76 43.4
VMungo1127G1344 Vigna mungo HOM05D000839 ORTHO05D000664 1.4e-07 61.6 68 50.0
DCAR_015859 Daucus carota HOM05D000206 ORTHO05D000232 7.6e-06 55.8 136 27.9
Hund16840 Selenicereus undatus HOM05D000018 ORTHO05D001920 9.9e-06 55.5 193 23.8


User provided reference genes

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