Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0724 Selaginella moellendorffii HOM05D007449 ORTHO05D009504 2.5e-92 342.0 167 100.0
AagrBONN_evm.TU.Sc2ySwM_362.2319 Anthoceros agrestis HOM05D007449 ORTHO05D009504 3.9e-61 238.4 155 76.1
HPP92_008133 Vanilla planifolia HOM05D007449 ORTHO05D009504 5.8e-57 224.6 156 71.2
Nn1g09860 Nelumbo nucifera HOM05D007449 ORTHO05D009504 7.6e-57 224.2 158 68.4
SEGI_20644 Sequoiadendron giganteum HOM05D007449 ORTHO05D009504 9.9e-57 223.8 155 70.3
HPP92_008185 Vanilla planifolia HOM05D007449 ORTHO05D009504 9.9e-57 223.8 156 70.5
Mapoly0054s0111 Marchantia polymorpha HOM05D007449 ORTHO05D009504 1.3e-56 223.4 154 72.1
GSVIVG01036691001 Vitis vinifera HOM05D007449 ORTHO05D009504 2.9e-56 222.2 156 68.6
FAN21G0170 Fragaria x ananassa HOM05D007449 ORTHO05D009504 3.2e-55 218.8 164 64.0
Os01g0679600 Oryza sativa ssp. japonica HOM05D007449 ORTHO05D009504 5.5e-55 218.0 166 66.9
CDE02G1458 Ceratophyllum demersum HOM05D001125 ORTHO05D003189 7.1e-55 217.6 156 67.3
FvH4_3g13790 Fragaria vesca HOM05D007449 ORTHO05D009504 7.1e-55 217.6 164 64.0
Lsat_1_v5_gn_7_111001 Lactuca sativa HOM05D007449 ORTHO05D009504 1.2e-54 216.9 166 66.3
CANSAT56G2387 Cannabis sativa HOM05D007449 ORTHO05D009504 1.6e-54 216.5 155 68.4
MD05G1240900 Malus domestica HOM05D007449 ORTHO05D009504 1.6e-54 216.5 167 62.9
Zm00001eb156770 Zea mays HOM05D007449 ORTHO05D009504 3.5e-54 215.3 154 70.1
RcHm_v2.0_Chr5g0022981 Rosa chinensis HOM05D007449 ORTHO05D009504 4.6e-54 214.9 160 64.4
HanXRQChr11g0335831 Helianthus annuus HOM05D007449 ORTHO05D009504 6.0e-54 214.5 155 69.0
CsaV3_6G013330 Cucumis sativus L. HOM05D007449 ORTHO05D009504 7.9e-54 214.2 154 68.2
FAN11G1945 Fragaria x ananassa HOM05D007449 ORTHO05D009504 7.9e-54 214.2 165 63.6
Sed0001463 Sechium edule HOM05D007449 ORTHO05D009504 7.9e-54 214.2 163 66.3
MELO3C019608.2 Cucumis melo HOM05D007449 ORTHO05D009504 1.3e-53 213.4 156 66.7
ClCG02G018850 Citrullus lanatus HOM05D007449 ORTHO05D009504 5.1e-53 211.5 164 66.5
Dinv42450 Davidia involucrata HOM05D007449 ORTHO05D009504 6.7e-53 211.1 167 65.3
ECA236G3627 Erigeron canadensis HOM05D007449 ORTHO05D009504 6.7e-53 211.1 155 67.1
FAN16G1652 Fragaria x ananassa HOM05D007449 ORTHO05D009504 8.7e-53 210.7 157 65.6
Atru.chr1.9 Acer truncatum HOM05D007449 ORTHO05D009504 1.1e-52 210.3 154 64.9
Thhalv10019230m.g Eutrema salsugineum HOM05D007449 ORTHO05D009504 1.1e-52 210.3 156 65.4
AT1G79260 Arabidopsis thaliana HOM05D007449 ORTHO05D009504 1.5e-52 209.9 156 65.4
BcaB05g25191 Brassica carinata HOM05D007449 ORTHO05D009504 1.5e-52 209.9 156 65.4
Cfa017774 Carpinus fangiana HOM05D007449 ORTHO05D009504 1.5e-52 209.9 165 63.0
Prupe.4G124700 Prunus persica HOM05D007449 ORTHO05D009504 1.9e-52 209.5 160 63.1
Ciclev10006094m.g Citrus clementina HOM05D007449 ORTHO05D009504 3.3e-52 208.8 156 64.7
COL.COLO4_32270 Corchorus olitorius HOM05D007449 ORTHO05D009504 4.3e-52 208.4 158 65.2
MBI02_g42634_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 7.4e-52 207.6 154 66.9
AL2G39860 Arabidopsis lyrata HOM05D007449 ORTHO05D009504 1.3e-51 206.8 155 63.2
BraA02t07273Z Brassica rapa HOM05D007449 ORTHO05D009504 1.3e-51 206.8 156 62.8
Carub.0002s2613 Capsella rubella HOM05D007449 ORTHO05D009504 1.3e-51 206.8 156 64.7
CiPaw.15G111100 Carya illinoinensis HOM05D007449 ORTHO05D009504 1.3e-51 206.8 155 65.8
Hma1.2p1_1417F.1_g282110 Hydrangea macrophylla HOM05D007449 ORTHO05D009504 1.6e-51 206.5 156 66.0
Aqoxy5G02136 Aquilegia oxysepala HOM05D007449 ORTHO05D009504 2.8e-51 205.7 155 63.9
BolC2t09646H Brassica oleracea HOM05D007449 ORTHO05D009504 2.8e-51 205.7 156 63.5
Glyma.15G266900 Glycine max HOM05D007449 ORTHO05D009504 2.8e-51 205.7 161 65.2
Psat6g047080 Pisum sativum HOM05D007449 ORTHO05D009504 2.8e-51 205.7 163 62.0
THA.LOC104812400 Tarenaya hassleriana HOM05D007449 ORTHO05D009504 2.8e-51 205.7 156 61.5
Duzib213G0878 Durio zibethinus HOM05D007449 ORTHO05D009504 4.8e-51 204.9 158 65.2
Potri.010G175600 Populus trichocarpa HOM05D007449 ORTHO05D009504 4.8e-51 204.9 166 59.0
Sabra10G0135300 Salix brachista HOM05D007449 ORTHO05D009504 4.8e-51 204.9 166 59.6
Glyma.08G160000 Glycine max HOM05D007449 ORTHO05D009504 6.2e-51 204.5 166 62.7
Gohir.A13G127500 Gossypium hirsutum HOM05D007449 ORTHO05D009504 6.2e-51 204.5 167 60.5
Gohir.D13G131200 Gossypium hirsutum HOM05D007449 ORTHO05D009504 8.2e-51 204.1 167 60.5
Manes.16G050159 Manihot esculenta HOM05D007449 ORTHO05D009504 8.2e-51 204.1 155 65.8
A02p22730 Brassica napus HOM05D007449 ORTHO05D009504 1.1e-50 203.8 156 62.2
CSS0049228 Camellia sinensis var. sinensis HOM05D007449 ORTHO05D009504 1.1e-50 203.8 155 65.2
C02p36470 Brassica napus HOM05D007449 ORTHO05D009504 1.4e-50 203.4 156 62.8
Medtr1g046590 Medicago truncatula HOM05D007449 ORTHO05D009504 3.1e-50 202.2 158 63.3
Lalb_Chr01g0015631 Lupinus albus HOM05D007449 ORTHO05D009504 4.0e-50 201.8 155 65.2
Gorai.013G147200 Gossypium raimondii HOM05D007449 ORTHO05D009504 5.3e-50 201.4 167 59.9
BcaC03g15880 Brassica carinata HOM05D007449 ORTHO05D009504 6.9e-50 201.1 156 62.2
Sp5g34340 Schrenkiella parvula HOM05D007449 ORTHO05D009504 9.0e-50 200.7 153 63.4
TAR629G0115 Trochodendron aralioides HOM05D007449 ORTHO05D009504 4.5e-49 198.4 190 55.3
Cc08_g13080 Coffea canephora HOM05D007449 ORTHO05D009504 1.0e-48 197.2 169 59.2
TPR.G11303 Trifolium pratense HOM05D007449 ORTHO05D009504 1.0e-48 197.2 163 59.5
Pp3c6_12570 Physcomitrium patens HOM05D007449 ORTHO05D009504 1.7e-48 196.4 115 77.4
Nitab4.5_0005124g0020 Nicotiana tabacum HOM05D007449 ORTHO05D009504 4.9e-48 194.9 162 63.0
ATR0109G018 Amborella trichopoda HOM05D007449 ORTHO05D009504 6.5e-48 194.5 157 63.7
arahy.Tifrunner.gnm1.ann1.4RN51I Arachis hypogaea HOM05D007449 ORTHO05D009504 6.5e-48 194.5 157 62.4
arahy.Tifrunner.gnm1.ann1.VWXD6N Arachis hypogaea HOM05D007449 ORTHO05D009504 6.5e-48 194.5 157 62.4
Nitab4.5_0006598g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.4e-47 193.4 155 63.9
PGSC0003DMG400013314 Solanum tuberosum HOM05D007449 ORTHO05D009504 1.9e-47 193.0 155 63.9
PGR031G0327 Punica granatum HOM05D007449 ORTHO05D009504 2.5e-47 192.6 161 60.2
MSTRG.13092 Avicennia marina HOM05D007449 ORTHO05D009504 3.2e-47 192.2 162 62.3
Migut.H01650 Erythranthe guttata HOM05D007449 ORTHO05D009504 4.2e-47 191.8 155 60.6
Oeu002792.1 Olea europaea HOM05D007449 ORTHO05D009775 4.2e-47 191.8 161 61.5
Solyc11g011610.2 Solanum lycopersicum HOM05D007449 ORTHO05D009504 5.5e-47 191.4 155 63.2
Nitab4.5_0001438g0030 Nicotiana tabacum HOM05D007449 ORTHO05D009504 1.6e-46 189.9 162 61.1
Aa31LG4G1730 Aethionema arabicum HOM05D007449 ORTHO05D009504 2.1e-46 189.5 174 56.3
Solyc11g011620.3 Solanum lycopersicum HOM05D007449 ORTHO05D009504 2.1e-46 189.5 154 63.0
Peaxi162Scf00124g01733 Petunia axillaris HOM05D007449 ORTHO05D009504 2.7e-46 189.1 155 61.9
Sopen11g006460 Solanum pennellii HOM05D007449 ORTHO05D009504 2.7e-46 189.1 155 62.6
SGA_v2.0_scaffold49G18211 Striga asiatica HOM05D007449 ORTHO05D009504 2.7e-46 189.1 155 61.3
Rhsim10G0133000 Rhododendron simsii HOM05D007449 ORTHO05D009504 3.5e-46 188.7 195 53.3
TWI38G0722 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.5e-46 188.7 168 58.9
TWI38G2117 Tripterygium wilfordii HOM05D007449 ORTHO05D009504 3.5e-46 188.7 168 58.9
vmacro12790 Vaccinium macrocarpon HOM05D007449 ORTHO05D009504 2.3e-45 186.0 116 75.0
CAN.G222.124 Capsicum annuum HOM05D007449 ORTHO05D009504 3.0e-45 185.7 165 58.2
Phvul.005G043600 Phaseolus vulgaris HOM05D007449 ORTHO05D009504 6.9e-42 174.5 157 57.3
Eucgr.F04482 Eucalyptus grandis HOM05D007449 ORTHO05D009504 7.6e-41 171.0 153 57.5
QL04p096242 Quercus lobata HOM05D007449 ORTHO05D009504 7.6e-41 171.0 114 69.3
Actinidia33338 Actinidia chinensis HOM05D007449 ORTHO05D009504 1.0e-40 170.6 135 65.9
Haze_18462 Corylus avellana HOM05D007449 ORTHO05D009504 1.3e-40 170.2 130 63.1
QL04p096050 Quercus lobata HOM05D007449 ORTHO05D009504 2.2e-40 169.5 113 69.0
arahy.Tifrunner.gnm1.ann1.FIRH26 Arachis hypogaea HOM05D007449 ORTHO05D009504 6.5e-40 167.9 119 65.5
Nitab4.5_0009898g0010 Nicotiana tabacum HOM05D007449 ORTHO05D009504 2.4e-34 149.4 154 53.9
DCAR_013701 Daucus carota HOM05D007449 ORTHO05D009504 1.5e-33 146.7 89 74.2
Ca_03327_v3 Cicer arietinum L. HOM05D007449 ORTHO05D009504 1.3e-32 143.7 112 65.2
Lj2A6T27 Lonicera japonica HOM05D007449 ORTHO05D009504 5.0e-32 141.7 90 68.9
FAN25G3406 Fragaria x ananassa HOM05D007449 ORTHO05D009504 1.1e-31 140.6 110 65.5
MBI02_g17887_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 2.2e-27 126.3 154 48.7
Nitab4.5_0001650g0100 Nicotiana tabacum HOM05D000057 ORTHO05D000021 8.0e-22 107.8 72 69.4
Aa31LG4G1740 Aethionema arabicum HOM05D007449 ORTHO05D009504 9.7e-20 100.9 155 38.1
Nitab4.5_0007284g0070 Nicotiana tabacum HOM05D000057 ORTHO05D000021 3.2e-15 85.9 62 64.5
TPR.G35695 Trifolium pratense HOM05D000290 ORTHO05D044376 5.2e-13 78.6 75 53.3
Gohir.D03G088000 Gossypium hirsutum HOM05D007449 ORTHO05D000032 4.4e-12 75.5 53 67.9
Glyma.14G034600 Glycine max HOM05D007449 ORTHO05D009504 3.2e-07 59.3 40 62.5
MBI02_g30541_MAGBIO Magnolia biondii HOM05D007449 ORTHO05D009504 6.1e-06 55.1 83 47.0


User provided reference genes

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