Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 7.0e-66 253.8 130 100.0
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 1.5e-23 113.2 128 43.8
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 4.3e-23 111.7 125 44.8
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 5.6e-23 111.3 120 46.7
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 1.6e-22 109.8 125 44.0
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 3.6e-22 108.6 118 44.1
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 4.7e-22 108.2 125 42.4
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.2e-22 107.8 127 41.7
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 6.2e-22 107.8 127 41.7
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.1e-21 107.1 130 44.6
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.4e-21 106.7 120 43.3
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 1.4e-21 106.7 130 43.8
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 1.4e-21 106.7 123 43.9
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 1.4e-21 106.7 118 44.1
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 1.8e-21 106.3 125 43.2
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 3.1e-21 105.5 125 42.4
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 3.1e-21 105.5 127 42.5
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 3.1e-21 105.5 119 45.4
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.0e-21 105.1 118 44.1
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 4.0e-21 105.1 119 44.5
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 5.2e-21 104.8 118 44.1
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 5.2e-21 104.8 120 45.8
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 5.2e-21 104.8 130 42.3
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 5.2e-21 104.8 127 40.2
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 5.2e-21 104.8 127 40.2
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 5.2e-21 104.8 130 41.5
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 6.8e-21 104.4 118 45.8
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 6.8e-21 104.4 127 40.9
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 6.8e-21 104.4 118 42.4
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 8.9e-21 104.0 127 40.2
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 8.9e-21 104.0 118 42.4
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.2e-20 103.6 127 40.2
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 1.5e-20 103.2 130 43.8
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 1.5e-20 103.2 118 44.1
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.5e-20 103.2 120 46.7
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 1.5e-20 103.2 127 42.5
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.0e-20 102.8 127 40.9
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 2.0e-20 102.8 118 41.5
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 2.6e-20 102.4 127 40.9
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 2.6e-20 102.4 119 41.2
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 2.6e-20 102.4 118 41.5
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 2.6e-20 102.4 118 42.4
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 2.6e-20 102.4 120 40.8
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 3.4e-20 102.1 130 40.8
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 3.4e-20 102.1 127 40.2
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 3.4e-20 102.1 132 42.4
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 3.4e-20 102.1 118 42.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 4.4e-20 101.7 118 43.2
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 4.4e-20 101.7 118 42.4
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 4.4e-20 101.7 118 42.4
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 4.4e-20 101.7 118 41.5
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 4.4e-20 101.7 127 39.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 5.8e-20 101.3 118 43.2
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 5.8e-20 101.3 127 40.2
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 5.8e-20 101.3 114 43.9
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 5.8e-20 101.3 118 42.4
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 7.6e-20 100.9 118 41.5
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 9.9e-20 100.5 118 42.4
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 9.9e-20 100.5 118 41.5
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 9.9e-20 100.5 118 41.5
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 9.9e-20 100.5 118 41.5
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 9.9e-20 100.5 118 41.5
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 9.9e-20 100.5 128 42.2
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 1.3e-19 100.1 118 41.5
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 1.3e-19 100.1 118 41.5
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 1.3e-19 100.1 132 39.4
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 1.3e-19 100.1 118 43.2
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.7e-19 99.8 130 40.0
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 1.7e-19 99.8 118 41.5
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 1.7e-19 99.8 119 42.9
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 2.2e-19 99.4 127 38.6
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 2.2e-19 99.4 118 42.4
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 2.9e-19 99.0 118 41.5
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.9e-19 99.0 130 40.0
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 2.9e-19 99.0 130 40.0
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 2.9e-19 99.0 118 40.7
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 2.9e-19 99.0 121 42.1
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.8e-19 98.6 118 39.0
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 3.8e-19 98.6 118 39.0
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 6.4e-19 97.8 130 39.2
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 8.4e-19 97.4 118 41.5
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.1e-18 97.1 118 39.0
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-18 97.1 130 40.0
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.1e-18 97.1 130 40.0
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 1.1e-18 97.1 118 40.7
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 1.1e-18 97.1 118 39.8
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 1.9e-18 96.3 118 39.0
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 2.4e-18 95.9 118 39.8
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 3.2e-18 95.5 127 37.0
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 3.2e-18 95.5 120 38.3
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 4.2e-18 95.1 130 40.0
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 4.2e-18 95.1 118 39.8
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 5.4e-18 94.7 118 38.1
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 5.4e-18 94.7 127 39.4
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 5.4e-18 94.7 118 39.8
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 9.2e-18 94.0 127 36.2
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 9.2e-18 94.0 127 39.4
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 9.2e-18 94.0 127 39.4
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 1.2e-17 93.6 126 39.7
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 1.6e-17 93.2 127 38.6
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 1.6e-17 93.2 127 38.6
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 1.6e-17 93.2 96 45.8
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 1.6e-17 93.2 118 41.5
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 2.1e-17 92.8 118 43.2
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 2.7e-17 92.4 128 38.3
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 4.6e-17 91.7 127 37.0
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 6.0e-17 91.3 131 37.4
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 6.0e-17 91.3 118 37.3
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.0e-16 90.5 119 38.7
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 2.3e-16 89.4 118 39.0
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 5.1e-16 88.2 143 34.3
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 1.9e-15 86.3 115 38.3
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 1.9e-15 86.3 118 36.4
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 2.5e-15 85.9 118 36.4
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.5e-15 85.9 92 44.6
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 1.3e-14 83.6 92 43.5
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 6.2e-14 81.3 157 32.5
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 1.1e-13 80.5 118 38.1
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.9e-13 77.8 118 37.3
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 8.4e-11 70.9 129 32.6
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 8.4e-11 70.9 69 44.9
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 1.6e-09 66.6 126 32.5
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 1.7e-08 63.2 65 44.6
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 8.7e-08 60.8 64 45.3
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 2.5e-07 59.3 66 42.4
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 3.3e-07 58.9 100 32.0
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 3.3e-07 58.9 68 38.2
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 4.3e-07 58.5 71 40.8
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 4.3e-07 58.5 71 39.4
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 5.6e-07 58.2 68 39.7
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.8e-06 55.8 68 36.8
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 2.8e-06 55.8 69 37.7
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.8e-06 55.8 67 38.8


User provided reference genes

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