Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.0e-70 270.0 138 100.0
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 4.5e-63 244.6 153 85.6
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 2.9e-46 188.7 149 64.4
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 7.2e-45 184.1 151 63.6
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.7e-38 162.9 152 53.3
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 2.2e-38 162.5 149 53.0
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 2.2e-38 162.5 149 53.0
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 2.9e-38 162.2 149 55.7
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.9e-38 162.2 149 55.7
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 5.0e-38 161.4 149 52.3
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 6.5e-38 161.0 149 53.0
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 6.5e-38 161.0 149 53.0
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 8.5e-38 160.6 149 55.0
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 1.1e-37 160.2 149 55.0
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 1.1e-37 160.2 152 52.0
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.5e-37 159.8 149 55.0
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.5e-37 159.8 149 54.4
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 1.5e-37 159.8 147 54.4
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.5e-37 159.8 149 53.0
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 1.9e-37 159.5 149 54.4
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.5e-37 159.1 150 53.3
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 2.5e-37 159.1 149 53.7
Sed0027504 Sechium edule HOM05D005054 ORTHO05D005948 2.5e-37 159.1 149 54.4
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 4.2e-37 158.3 154 53.9
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 4.2e-37 158.3 149 51.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 4.2e-37 158.3 150 53.3
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 4.2e-37 158.3 150 53.3
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 4.2e-37 158.3 149 53.0
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 4.2e-37 158.3 149 52.3
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 4.2e-37 158.3 149 53.7
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 5.5e-37 157.9 149 53.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 5.5e-37 157.9 149 53.7
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 5.5e-37 157.9 149 53.0
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 5.5e-37 157.9 149 51.7
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 5.5e-37 157.9 150 54.0
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 5.5e-37 157.9 149 53.0
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 7.2e-37 157.5 150 53.3
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 7.2e-37 157.5 149 53.0
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 9.4e-37 157.1 149 51.7
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 9.4e-37 157.1 148 53.4
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 9.4e-37 157.1 149 53.0
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 9.4e-37 157.1 149 51.7
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 1.2e-36 156.8 150 53.3
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 1.2e-36 156.8 149 53.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.2e-36 156.8 149 52.3
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.2e-36 156.8 149 52.3
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 1.6e-36 156.4 148 52.7
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.6e-36 156.4 147 52.4
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.6e-36 156.4 149 52.3
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.6e-36 156.4 149 51.7
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 2.1e-36 156.0 150 52.7
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.1e-36 156.0 149 53.7
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 2.1e-36 156.0 149 51.7
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.1e-36 156.0 150 52.0
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 2.1e-36 156.0 150 52.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-36 155.6 146 55.5
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-36 155.6 148 52.7
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 2.7e-36 155.6 146 55.5
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.7e-36 155.6 148 52.7
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.7e-36 155.6 146 55.5
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 2.7e-36 155.6 149 52.3
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 3.6e-36 155.2 150 52.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 3.6e-36 155.2 150 52.7
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 3.6e-36 155.2 150 51.3
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 3.6e-36 155.2 149 50.3
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 3.6e-36 155.2 149 52.3
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 4.7e-36 154.8 150 50.7
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.7e-36 154.8 148 52.7
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 4.7e-36 154.8 148 52.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 6.1e-36 154.5 150 52.0
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 6.1e-36 154.5 150 52.0
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 6.1e-36 154.5 149 54.4
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 8.0e-36 154.1 155 52.9
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 8.0e-36 154.1 154 51.3
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 8.0e-36 154.1 146 54.1
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 8.0e-36 154.1 149 52.3
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.0e-35 153.7 149 51.0
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.0e-35 153.7 152 52.6
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.4e-35 153.3 149 50.3
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 1.8e-35 152.9 150 51.3
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.3e-35 152.5 148 50.7
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 2.3e-35 152.5 149 49.7
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 3.0e-35 152.1 155 51.6
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 3.0e-35 152.1 149 50.3
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 4.0e-35 151.8 149 51.7
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 4.0e-35 151.8 149 53.0
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 4.0e-35 151.8 150 49.3
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 4.0e-35 151.8 149 50.3
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.2e-35 151.4 149 50.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.8e-35 151.0 149 47.7
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 8.8e-35 150.6 149 49.7
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.2e-34 150.2 149 52.3
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.5e-34 149.8 146 53.4
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 3.4e-34 148.7 154 50.0
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 3.4e-34 148.7 152 49.3
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 4.4e-34 148.3 149 47.0
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 4.4e-34 148.3 148 49.3
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-33 146.4 154 50.0
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.7e-33 146.4 154 50.0
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 1.7e-33 146.4 150 50.7
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 6.3e-33 144.4 152 50.0
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.1e-32 143.7 165 47.3
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-32 143.3 153 51.0
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.4e-32 143.3 153 51.0
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 3.1e-32 142.1 135 51.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 9.1e-32 140.6 149 48.3
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 9.1e-32 140.6 151 49.0
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 1.2e-31 140.2 149 48.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 1.6e-31 139.8 150 48.7
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.6e-31 139.8 160 45.6
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 2.0e-31 139.4 141 49.6
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 2.7e-31 139.0 141 49.6
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 3.5e-31 138.7 149 47.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 3.5e-31 138.7 149 47.0
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-30 137.1 149 47.0
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-30 137.1 149 47.0
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.0e-30 137.1 191 40.8
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 1.3e-30 136.7 140 47.9
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 2.3e-30 136.0 149 46.3
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.9e-30 135.6 163 45.4
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 2.9e-30 135.6 151 47.7
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 5.0e-30 134.8 151 47.0
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 3.3e-29 132.1 155 47.1
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 5.5e-29 131.3 118 57.6
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 6.1e-28 127.9 154 44.2
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 6.1e-28 127.9 131 51.9
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.0e-27 127.1 122 54.1
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.4e-27 126.7 146 48.6
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 2.3e-27 125.9 122 50.0
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.9e-25 118.2 123 49.6
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 3.9e-22 108.6 119 51.3
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 3.3e-21 105.5 113 48.7
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 5.6e-21 104.8 109 48.6
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 2.8e-20 102.4 108 51.9
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 5.2e-19 98.2 132 43.2
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 1.5e-18 96.7 103 49.5
Actinidia14094 Actinidia chinensis HOM05D005054 ORTHO05D005948 4.4e-18 95.1 135 37.0
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 4.4e-18 95.1 149 37.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 1.3e-17 93.6 150 37.3
Peaxi162Scf00136g00153 Petunia axillaris HOM05D005054 ORTHO05D005948 2.2e-17 92.8 103 49.5
arahy.Tifrunner.gnm1.ann1.M1LVA5 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.6e-15 86.7 63 58.7
HPP92_000478 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.3e-11 72.8 108 38.0
Zm00001eb279560 Zea mays HOM05D005054 ORTHO05D005948 5.2e-11 71.6 50 58.0
Zm00001eb412760 Zea mays HOM05D002563 ORTHO05D005948 6.8e-11 71.2 48 60.4
MCO11G876 Micromonas commoda HOM05D005054 ORTHO05D005948 4.4e-10 68.6 139 31.7
Zm00001eb260640 Zea mays HOM05D002563 ORTHO05D005948 5.8e-10 68.2 48 58.3
Zm00001eb260650 Zea mays HOM05D005054 ORTHO05D005948 5.8e-10 68.2 59 62.7
C01p06810 Brassica napus HOM05D000316 ORTHO05D001978 1.1e-08 63.9 47 59.6
A01p06180 Brassica napus HOM05D000316 ORTHO05D001978 3.2e-08 62.4 47 59.6
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.0e-06 57.4 131 29.8


User provided reference genes

Program Settings