Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 2.8e-174 615.1 309 100.0
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.5e-108 395.6 310 63.9
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.6e-105 386.7 310 61.0
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 5.3e-104 381.7 311 60.8
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.3e-102 377.1 320 57.8
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 2.7e-100 369.4 317 56.2
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.8e-99 366.7 317 55.2
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.3e-99 366.3 317 55.8
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 3.9e-99 365.5 319 54.9
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 6.7e-99 364.8 314 55.4
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 1.5e-98 363.6 313 56.5
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.5e-98 362.8 316 55.1
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 2.5e-98 362.8 316 55.1
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 5.7e-98 361.7 314 55.4
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 5.7e-98 361.7 313 55.0
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 1.3e-97 360.5 317 54.3
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.1e-97 359.8 317 54.3
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 2.1e-97 359.8 314 54.5
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.8e-97 359.4 317 55.2
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 3.7e-97 359.0 317 54.6
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.7e-97 359.0 317 54.9
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 4.8e-97 358.6 317 53.9
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 4.8e-97 358.6 317 53.9
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 4.8e-97 358.6 317 53.9
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 4.8e-97 358.6 316 54.7
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 6.2e-97 358.2 317 53.9
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 6.2e-97 358.2 317 55.2
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 8.2e-97 357.8 316 54.4
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 1.1e-96 357.5 317 54.3
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 1.1e-96 357.5 307 54.4
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 1.4e-96 357.1 317 53.6
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.4e-96 356.3 316 55.4
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 4.1e-96 355.5 314 56.1
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 4.1e-96 355.5 316 54.4
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 5.3e-96 355.1 314 56.1
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.3e-96 355.1 316 54.4
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.3e-96 355.1 317 54.9
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 9.0e-96 354.4 317 54.3
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 9.0e-96 354.4 316 54.1
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 9.0e-96 354.4 316 53.8
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.2e-95 354.0 317 53.9
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 1.2e-95 354.0 316 53.5
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 1.5e-95 353.6 317 53.0
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 3.4e-95 352.4 316 54.1
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 4.5e-95 352.1 312 53.5
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 5.8e-95 351.7 317 52.7
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 5.8e-95 351.7 317 53.6
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 5.8e-95 351.7 313 53.4
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 5.8e-95 351.7 316 53.8
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 5.8e-95 351.7 317 54.3
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 7.6e-95 351.3 316 53.5
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 7.6e-95 351.3 313 54.0
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 7.6e-95 351.3 313 54.3
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 1.7e-94 350.1 314 55.7
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 1.7e-94 350.1 317 53.9
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.2e-94 349.7 311 53.7
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 2.2e-94 349.7 316 52.8
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 5.0e-94 348.6 317 52.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 6.5e-94 348.2 319 53.9
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 6.5e-94 348.2 316 51.9
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 8.4e-94 347.8 319 53.6
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 8.4e-94 347.8 311 53.4
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.4e-94 347.8 312 53.2
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 1.1e-93 347.4 314 53.8
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 1.4e-93 347.1 318 53.8
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.9e-93 346.7 319 53.6
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.9e-93 346.7 313 55.0
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 2.5e-93 346.3 317 51.4
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 2.5e-93 346.3 317 51.4
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.5e-93 346.3 317 54.3
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 3.2e-93 345.9 317 53.9
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 3.2e-93 345.9 316 51.9
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 4.2e-93 345.5 319 53.6
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 4.2e-93 345.5 318 52.2
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 5.5e-93 345.1 313 53.0
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 7.2e-93 344.7 311 52.7
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 7.2e-93 344.7 316 52.2
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 9.3e-93 344.4 314 51.0
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.2e-92 344.0 318 51.9
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 2.7e-92 342.8 316 53.2
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 3.5e-92 342.4 319 53.3
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 3.5e-92 342.4 301 54.5
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 4.6e-92 342.0 317 52.4
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 4.6e-92 342.0 316 51.6
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.1e-92 341.7 313 53.4
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 7.9e-92 341.3 316 52.5
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 7.9e-92 341.3 313 53.4
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 7.9e-92 341.3 379 46.4
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.0e-91 340.9 312 56.1
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 1.3e-91 340.5 318 50.6
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 1.3e-91 340.5 313 52.7
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 1.8e-91 340.1 312 52.9
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 1.8e-91 340.1 312 52.9
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.0e-91 339.3 313 53.0
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 5.1e-91 338.6 315 51.7
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 5.1e-91 338.6 312 52.2
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 8.7e-91 337.8 313 53.0
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.1e-90 337.4 317 52.4
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.1e-90 337.4 318 51.9
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.1e-90 337.4 316 51.6
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.5e-90 337.0 316 51.6
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-90 337.0 313 52.7
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.5e-90 337.0 313 52.7
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 1.9e-90 336.7 313 53.0
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 2.8e-89 332.8 301 54.2
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 3.7e-89 332.4 318 50.0
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.4e-88 330.5 326 50.6
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 1.4e-88 330.5 326 50.9
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.8e-88 330.1 320 50.6
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 5.3e-88 328.6 290 55.9
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.6e-87 326.2 312 50.0
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 1.0e-86 324.3 291 53.3
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 6.5e-86 321.6 298 52.7
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 8.5e-86 321.2 303 51.2
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 8.5e-86 321.2 316 49.1
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 5.5e-85 318.5 317 50.2
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 7.2e-85 318.2 305 52.8
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.7e-81 305.8 271 53.9
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 4.8e-81 305.4 293 50.9
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 5.3e-80 302.0 333 47.7
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.7e-76 288.9 300 49.3
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 7.9e-76 288.1 306 46.4
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 3.9e-75 285.8 258 54.7
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.2e-70 270.0 285 48.8
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 9.4e-69 264.6 286 46.2
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.2e-68 264.2 286 46.2
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.7e-68 263.1 310 43.9
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.1e-68 261.9 286 46.2
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.4e-67 260.8 294 43.2
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 4.0e-67 259.2 292 45.2
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 1.5e-66 257.3 295 43.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.1e-64 249.2 291 44.7
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.7e-62 243.8 267 46.8
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 7.2e-61 238.4 316 41.8
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.5e-58 230.7 220 50.5
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 2.0e-58 230.3 316 40.5
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 3.4e-58 229.6 221 51.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 3.8e-54 216.1 309 39.8
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.0e-51 208.0 301 39.5
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.1e-48 198.0 153 58.2
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 3.8e-46 189.5 298 37.9
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.1e-45 188.0 145 55.9
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.3e-45 185.3 332 34.3
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.4e-43 181.0 216 44.4
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 5.7e-42 175.6 167 52.1
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.5e-42 175.3 292 34.9
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.0e-38 164.9 310 33.9
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-37 161.0 290 33.8
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.5e-37 161.0 301 31.2
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 1.5e-37 161.0 210 41.4
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 5.6e-37 159.1 309 35.0
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.6e-36 157.5 290 35.2
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 6.2e-36 155.6 161 48.4
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 1.0e-35 154.8 149 51.7
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.4e-35 154.5 160 55.6
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 4.0e-35 152.9 134 55.2
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.3e-33 147.9 293 32.1
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.4e-32 143.7 323 31.9
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.1e-32 142.9 290 32.8
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-30 137.5 282 33.0
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 5.0e-30 136.0 135 48.9
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 8.9e-27 125.2 99 54.5
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.0e-26 124.0 302 28.1
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 9.8e-26 121.7 287 29.3
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.7e-25 120.9 306 32.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.9e-24 117.5 121 50.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.1e-23 114.0 191 35.1
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.7e-23 113.6 217 30.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 5.1e-22 109.4 343 26.8
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.1e-21 108.2 99 51.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 2.1e-20 104.0 292 28.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.4e-18 96.7 295 28.5
Oeu020564.1 Olea europaea HOM05D003942 ORTHO05D004527 1.0e-14 85.1 79 49.4
FAN10G3156 Fragaria x ananassa HOM05D000449 ORTHO05D004527 3.0e-14 83.6 80 52.5
BcaB02g11262 Brassica carinata HOM05D003942 ORTHO05D004527 3.9e-14 83.2 92 42.4
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 4.4e-10 69.7 147 32.7
PSO478G4509 Papaver somniferum HOM05D003942 ORTHO05D004527 3.0e-06 57.0 41 63.4


User provided reference genes

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