Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0332 Selaginella moellendorffii HOM05D003933 ORTHO05D004746 4.8e-238 827.4 408 100.0
Potri.005G092000 Populus trichocarpa HOM05D003933 ORTHO05D004746 4.4e-90 335.9 394 47.7
ClCG10G012050 Citrullus lanatus HOM05D003933 ORTHO05D004746 7.0e-88 328.6 396 46.0
TAR629G2222 Trochodendron aralioides HOM05D003933 ORTHO05D004746 2.3e-86 323.6 396 47.0
COL.COLO4_08591 Corchorus olitorius HOM05D003933 ORTHO05D004746 3.8e-86 322.8 395 44.8
Sed0001276 Sechium edule HOM05D003933 ORTHO05D004746 3.8e-86 322.8 393 44.5
Gohir.A13G060600 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.9e-85 320.5 392 45.4
Nitab4.5_0000569g0090 Nicotiana tabacum HOM05D003933 ORTHO05D004746 1.9e-85 320.5 395 45.8
Manes.08G053300 Manihot esculenta HOM05D003933 ORTHO05D004746 3.3e-85 319.7 393 47.3
Phvul.003G004900 Phaseolus vulgaris HOM05D003933 ORTHO05D004746 9.5e-85 318.2 384 47.1
RcHm_v2.0_Chr4g0446781 Rosa chinensis HOM05D003933 ORTHO05D004746 9.5e-85 318.2 396 44.4
TWI77G0671 Tripterygium wilfordii HOM05D003933 ORTHO05D004746 9.5e-85 318.2 393 45.3
CsaV3_3G031790 Cucumis sativus L. HOM05D003933 ORTHO05D004746 1.2e-84 317.8 382 45.5
FAN07G0849 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.1e-84 317.0 396 44.2
Os02g0634600 Oryza sativa ssp. japonica HOM05D003933 ORTHO05D004746 2.8e-84 316.6 398 43.7
arahy.Tifrunner.gnm1.ann1.2XRJ77 Arachis hypogaea HOM05D003933 ORTHO05D004746 3.6e-84 316.2 396 45.5
arahy.Tifrunner.gnm1.ann1.J5HH0A Arachis hypogaea HOM05D003933 ORTHO05D004746 3.6e-84 316.2 396 45.5
Ciclev10031732m.g Citrus clementina HOM05D003933 ORTHO05D004746 4.7e-84 315.8 395 45.6
Gorai.013G069800 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.7e-84 315.8 392 44.6
MELO3C024011.2 Cucumis melo HOM05D003933 ORTHO05D004746 6.1e-84 315.5 386 45.3
PGR142G4240 Punica granatum HOM05D003933 ORTHO05D004746 6.1e-84 315.5 401 45.1
Gohir.D13G061300 Gossypium hirsutum HOM05D003933 ORTHO05D004746 8.0e-84 315.1 392 44.1
CAN.G107.7 Capsicum annuum HOM05D003933 ORTHO05D004746 1.0e-83 314.7 396 45.2
EL10Ac9g22955 Beta vulgaris HOM05D003933 ORTHO05D004746 1.4e-83 314.3 398 46.0
FvH4_4g36990 Fragaria vesca HOM05D003933 ORTHO05D004746 1.4e-83 314.3 396 43.9
Psat6g135760 Pisum sativum HOM05D003933 ORTHO05D004746 1.4e-83 314.3 394 46.4
THA.LOC104800863 Tarenaya hassleriana HOM05D003933 ORTHO05D004746 1.4e-83 314.3 395 46.1
Cfa008748 Carpinus fangiana HOM05D003933 ORTHO05D004746 1.8e-83 313.9 401 45.9
Manes.09G017800 Manihot esculenta HOM05D003933 ORTHO05D004746 1.8e-83 313.9 395 45.6
Solyc12g088450.3 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.0e-83 313.2 395 44.6
Thecc.02G159300 Theobroma cacao HOM05D003933 ORTHO05D004746 3.0e-83 313.2 389 44.5
Aa31LG3G18300 Aethionema arabicum HOM05D003933 ORTHO05D004746 4.0e-83 312.8 390 45.1
Nitab4.5_0003643g0030 Nicotiana tabacum HOM05D003933 ORTHO05D004746 4.0e-83 312.8 395 45.1
Hund08600 Selenicereus undatus HOM05D003933 ORTHO05D004746 4.0e-83 312.8 404 44.8
MD13G1004400 Malus domestica HOM05D003933 ORTHO05D004746 5.2e-83 312.4 397 43.8
Prupe.1G348200 Prunus persica HOM05D003933 ORTHO05D004746 5.2e-83 312.4 397 44.1
CSS0045284 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.2e-82 311.2 398 44.0
Glyma.09G282800 Glycine max HOM05D003933 ORTHO05D004746 1.5e-82 310.8 393 46.3
Medtr1g037570 Medicago truncatula HOM05D003933 ORTHO05D004746 1.5e-82 310.8 387 46.8
Duzib132G1110 Durio zibethinus HOM05D003933 ORTHO05D004746 4.4e-82 309.3 389 44.7
Ca_07914_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 5.7e-82 308.9 406 45.8
Lalb_Chr10g0094951 Lupinus albus HOM05D003933 ORTHO05D004746 5.7e-82 308.9 396 45.5
TPR.G29790 Trifolium pratense HOM05D003933 ORTHO05D004746 5.7e-82 308.9 395 45.8
VMungo0251G2024 Vigna mungo HOM05D003933 ORTHO05D004746 5.7e-82 308.9 411 45.5
PGSC0003DMG402011550 Solanum tuberosum HOM05D003933 ORTHO05D004746 7.5e-82 308.5 395 44.6
Duzib277G0001 Durio zibethinus HOM05D003933 ORTHO05D004746 9.8e-82 308.1 389 44.5
Lj2g0026122 Lotus japonicus HOM05D003933 ORTHO05D004746 9.8e-82 308.1 396 45.2
Aqoxy5G00269 Aquilegia oxysepala HOM05D003933 ORTHO05D004746 1.3e-81 307.8 396 44.4
AUR62032977 Chenopodium quinoa HOM05D003933 ORTHO05D004746 1.7e-81 307.4 406 43.3
CANSAT78G0638 Cannabis sativa HOM05D003933 ORTHO05D004746 2.8e-81 306.6 396 43.4
SGA_v2.0_scaffold38G15064 Striga asiatica HOM05D003933 ORTHO05D004746 3.7e-81 306.2 396 43.7
AL6G34400 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 6.3e-81 305.4 392 44.6
Atru.chr11.1157 Acer truncatum HOM05D003933 ORTHO05D004746 1.1e-80 304.7 392 44.9
AT5G23200 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.1e-80 304.7 393 44.5
CARHR190340 Cardamine hirsuta HOM05D003933 ORTHO05D004746 2.4e-80 303.5 400 43.8
Eucgr.J00872 Eucalyptus grandis HOM05D003933 ORTHO05D004746 5.4e-80 302.4 395 44.3
Thhalv10004353m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 7.0e-80 302.0 392 44.1
AagrBONN_evm.TU.Sc2ySwM_117.4016 Anthoceros agrestis HOM05D003933 ORTHO05D004746 9.2e-80 301.6 405 45.4
ECA234G4145 Erigeron canadensis HOM05D003933 ORTHO05D004746 9.2e-80 301.6 396 43.7
PSO063G7666 Papaver somniferum HOM05D003933 ORTHO05D004746 9.2e-80 301.6 401 43.6
MSTRG.890 Avicennia marina HOM05D003933 ORTHO05D004746 1.2e-79 301.2 404 43.6
Lsat_1_v5_gn_4_15060 Lactuca sativa HOM05D003933 ORTHO05D004746 1.2e-79 301.2 402 44.0
SalBow8G0218 Salvia bowleyana HOM05D003933 ORTHO05D004746 1.2e-79 301.2 393 43.3
Carub.0006s2098 Capsella rubella HOM05D003933 ORTHO05D004746 5.9e-79 298.9 395 43.8
PSO782G2797 Papaver somniferum HOM05D003933 ORTHO05D004746 5.9e-79 298.9 401 43.6
Peaxi162Scf00160g00123 Petunia axillaris HOM05D003933 ORTHO05D004746 5.9e-79 298.9 369 45.5
QL05p009967 Quercus lobata HOM05D003933 ORTHO05D004746 5.9e-79 298.9 394 44.9
Actinidia14952 Actinidia chinensis HOM05D003933 ORTHO05D004746 7.8e-79 298.5 401 43.4
Sp2g23940 Schrenkiella parvula HOM05D003933 ORTHO05D004746 1.0e-78 298.1 392 44.1
Haze_11764 Corylus avellana HOM05D003933 ORTHO05D004746 1.7e-78 297.4 430 42.3
DCAR_007284 Daucus carota HOM05D003933 ORTHO05D004746 2.9e-78 296.6 397 43.6
ATR0618G423 Amborella trichopoda HOM05D003933 ORTHO05D004746 3.9e-78 296.2 397 42.3
Cc11_g08880 Coffea canephora HOM05D003933 ORTHO05D004746 3.9e-78 296.2 394 42.4
Migut.L00761 Erythranthe guttata HOM05D003933 ORTHO05D004746 5.0e-78 295.8 399 42.9
Medtr4g075120 Medicago truncatula HOM05D003933 ORTHO05D004746 5.0e-78 295.8 371 43.7
C07p44350 Brassica napus HOM05D003933 ORTHO05D004746 6.6e-78 295.4 392 44.1
BolC7t44956H Brassica oleracea HOM05D003933 ORTHO05D004746 6.6e-78 295.4 392 44.1
Lj6A748G52 Lonicera japonica HOM05D003933 ORTHO05D004746 6.6e-78 295.4 397 44.3
CSS0043425 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.9e-77 293.9 398 43.0
Rhsim09G0099700 Rhododendron simsii HOM05D003933 ORTHO05D004746 1.9e-77 293.9 397 42.6
BraA03t13757Z Brassica rapa HOM05D003933 ORTHO05D004746 3.3e-77 293.1 395 43.5
A03p46330 Brassica napus HOM05D003933 ORTHO05D004746 4.3e-77 292.7 395 43.3
vmacro10631 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 4.3e-77 292.7 412 41.7
Pp3c10_5850 Physcomitrium patens HOM05D003933 ORTHO05D004746 2.1e-76 290.4 414 41.5
HanXRQChr12g0377651 Helianthus annuus HOM05D003933 ORTHO05D004746 2.8e-76 290.0 396 43.7
vmacro10628 Vaccinium macrocarpon HOM05D003933 ORTHO05D004746 2.8e-76 290.0 413 41.6
Cpa.g.sc0.130 Carica papaya HOM05D003933 ORTHO05D004746 4.7e-76 289.3 498 39.0
Peaxi162Scf00081g01011 Petunia axillaris HOM05D003933 ORTHO05D004746 1.4e-75 287.7 394 43.7
Mapoly0072s0109 Marchantia polymorpha HOM05D003933 ORTHO05D004746 4.0e-75 286.2 407 41.0
Duzib248G0690 Durio zibethinus HOM05D003933 ORTHO05D004746 2.0e-74 283.9 384 42.4
CANSAT11G2660 Cannabis sativa HOM05D003933 ORTHO05D004746 3.4e-74 283.1 383 43.1
CAN.G1054.19 Capsicum annuum HOM05D003933 ORTHO05D004746 3.4e-74 283.1 395 42.0
Sabra05G0076300 Salix brachista HOM05D003933 ORTHO05D004746 3.4e-74 283.1 338 47.0
unitig_26.g10014 Utricularia gibba HOM05D003933 ORTHO05D004746 1.3e-73 281.2 383 42.6
Nitab4.5_0000934g0120 Nicotiana tabacum HOM05D003933 ORTHO05D004746 2.2e-73 280.4 379 43.3
Solyc04g078160.4 Solanum lycopersicum HOM05D003933 ORTHO05D004746 3.7e-73 279.6 387 41.1
Hma1.2p1_0933F.1_g238310 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-72 277.7 430 40.7
Hma1.2p1_2428F.1_g321995 Hydrangea macrophylla HOM05D003933 ORTHO05D004746 1.4e-72 277.7 430 40.7
SEGI_04055 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 3.2e-72 276.6 405 41.7
Glyma.11G100000 Glycine max HOM05D003933 ORTHO05D004746 4.1e-72 276.2 392 42.6
PGSC0003DMG400021516 Solanum tuberosum HOM05D003933 ORTHO05D004746 4.1e-72 276.2 397 42.3
Sopen04g031790 Solanum pennellii HOM05D003933 ORTHO05D004746 1.6e-71 274.2 395 40.3
CiPaw.06G061200 Carya illinoinensis HOM05D003933 ORTHO05D004746 2.0e-71 273.9 344 46.2
arahy.Tifrunner.gnm1.ann1.3AB2AC Arachis hypogaea HOM05D003933 ORTHO05D004746 7.8e-71 271.9 381 42.0
VMungo1127G0010 Vigna mungo HOM05D003933 ORTHO05D004746 7.8e-71 271.9 384 42.2
DCAR_030211 Daucus carota HOM05D003933 ORTHO05D004746 1.0e-70 271.6 370 42.4
Ca_19016_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.3e-70 271.2 377 41.1
arahy.Tifrunner.gnm1.ann1.E3G1QY Arachis hypogaea HOM05D003933 ORTHO05D004746 1.7e-70 270.8 379 42.5
AL6G18670 Arabidopsis lyrata HOM05D003933 ORTHO05D004746 3.0e-70 270.0 391 41.2
Nitab4.5_0004707g0060 Nicotiana tabacum HOM05D003933 ORTHO05D004746 3.9e-70 269.6 377 42.2
Lj3g0001561 Lotus japonicus HOM05D003933 ORTHO05D004746 7.3e-69 265.4 389 39.6
AT5G08270 Arabidopsis thaliana HOM05D003933 ORTHO05D004746 1.1e-67 261.5 379 40.6
TPR.G25000 Trifolium pratense HOM05D003933 ORTHO05D004746 1.1e-67 261.5 353 41.9
FAN12G2057 Fragaria x ananassa HOM05D003933 ORTHO05D004746 2.3e-67 260.4 396 38.9
Lj3g0018867 Lotus japonicus HOM05D003933 ORTHO05D004746 2.0e-66 257.3 381 39.4
Gohir.A03G165000 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.7e-65 254.2 386 38.3
MBI06_g23608_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.9e-65 253.4 367 40.1
MBI06_g32507_MAGBIO Magnolia biondii HOM05D003933 ORTHO05D004746 2.9e-65 253.4 296 45.3
Thhalv10013838m.g Eutrema salsugineum HOM05D003933 ORTHO05D004746 3.7e-65 253.1 383 39.7
Sp6g34690 Schrenkiella parvula HOM05D003933 ORTHO05D004746 4.9e-65 252.7 367 39.8
Gohir.D02G188200 Gossypium hirsutum HOM05D003933 ORTHO05D004746 1.1e-64 251.5 383 38.4
Carub.0006s0715 Capsella rubella HOM05D003933 ORTHO05D004746 1.4e-64 251.1 358 40.8
Gorai.005G210900 Gossypium raimondii HOM05D003933 ORTHO05D004746 4.1e-64 249.6 383 38.4
Psat7g177760 Pisum sativum HOM05D003933 ORTHO05D004746 4.1e-64 249.6 324 42.3
Lalb_Chr19g0139431 Lupinus albus HOM05D003933 ORTHO05D004746 5.4e-64 249.2 370 41.1
Ca_20843_v3 Cicer arietinum L. HOM05D003933 ORTHO05D004746 1.2e-63 248.1 324 43.2
Sopen12g030430 Solanum pennellii HOM05D003933 ORTHO05D004746 6.0e-63 245.7 254 52.0
BcaB08g37269 Brassica carinata HOM05D003933 ORTHO05D004746 1.0e-62 245.0 391 39.1
Zm00001eb248160 Zea mays HOM05D003933 ORTHO05D004746 1.7e-62 244.2 296 45.9
BraA10t44888Z Brassica rapa HOM05D003933 ORTHO05D004746 6.6e-62 242.3 383 37.6
Lj3g0003114 Lotus japonicus HOM05D003933 ORTHO05D004746 2.5e-61 240.4 354 38.7
Lj3g0021014 Lotus japonicus HOM05D003933 ORTHO05D004746 2.5e-61 240.4 354 38.7
A10p28410 Brassica napus HOM05D003933 ORTHO05D004746 4.3e-61 239.6 377 37.7
Lj3g0017683 Lotus japonicus HOM05D003933 ORTHO05D004746 5.6e-61 239.2 354 38.4
BolC9t59613H Brassica oleracea HOM05D003933 ORTHO05D004746 2.8e-60 236.9 384 37.5
C09p68670 Brassica napus HOM05D003933 ORTHO05D004746 8.1e-60 235.3 383 37.6
Potri.005G092100 Populus trichocarpa HOM05D003933 ORTHO05D004746 5.2e-59 232.6 355 39.7
HPP92_008573 Vanilla planifolia HOM05D003933 ORTHO05D004746 1.2e-58 231.5 315 41.9
CBR_g6576 Chara braunii HOM05D003933 ORTHO05D004746 4.1e-56 223.0 453 34.4
CSS0006186 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 7.8e-55 218.8 269 46.1
FAN17G2963 Fragaria x ananassa HOM05D003933 ORTHO05D004746 7.3e-53 212.2 262 44.7
CSS0027256 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 9.6e-53 211.8 261 43.7
CDE08G0738 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 7.6e-50 202.2 253 44.3
CARHR204870 Cardamine hirsuta HOM05D003933 ORTHO05D004746 3.8e-49 199.9 263 44.9
CSS0013970 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 6.4e-49 199.1 274 42.7
CSS0049411 Camellia sinensis var. sinensis HOM05D003933 ORTHO05D004746 1.6e-47 194.5 232 46.6
GSVIVG01026245001 Vitis vinifera HOM05D003933 ORTHO05D004746 1.6e-44 184.5 391 33.2
Dinv17619 Davidia involucrata HOM05D003933 ORTHO05D004746 4.8e-44 183.0 240 43.8
Sed0007936 Sechium edule HOM05D003933 ORTHO05D004746 2.3e-38 164.1 319 33.9
Sc10g0005110 Simmondsia chinensis HOM05D003933 ORTHO05D004746 2.4e-35 154.1 194 44.3
PGSC0003DMG400011553 Solanum tuberosum HOM05D003933 ORTHO05D004746 5.3e-35 152.9 156 50.6
MCO06G263 Micromonas commoda HOM05D003933 ORTHO05D004746 1.2e-34 151.8 448 28.8
MD16G1003200 Malus domestica HOM05D003933 ORTHO05D004746 2.3e-22 110.9 355 28.7
Cre02.g086076 Chlamydomonas reinhardtii HOM05D003933 ORTHO05D004746 3.0e-22 110.5 318 30.8
SHI31071 Sapria himalayana HOM05D003933 ORTHO05D004746 3.7e-20 103.6 361 26.0
C06p10890 Brassica napus HOM05D003933 ORTHO05D004746 2.7e-15 87.4 234 27.4
CDE08G1244 Ceratophyllum demersum HOM05D003933 ORTHO05D004746 1.1e-13 82.0 114 39.5
COL.COLO4_20883 Corchorus olitorius HOM05D003933 ORTHO05D004746 1.1e-13 82.0 91 46.2
C02p60970 Brassica napus HOM05D003933 ORTHO05D004746 3.3e-13 80.5 234 26.5
A02p41110 Brassica napus HOM05D003933 ORTHO05D004746 3.1e-11 73.9 68 52.9
Nn7g37760 Nelumbo nucifera HOM05D003933 ORTHO05D004746 1.2e-10 72.0 112 37.5
SEGI_32331 Sequoiadendron giganteum HOM05D003933 ORTHO05D004746 2.6e-10 70.9 129 38.0
Sc10g0005100 Simmondsia chinensis HOM05D003933 ORTHO05D004746 6.5e-09 66.2 108 38.0
Dinv17620 Davidia involucrata HOM05D003933 ORTHO05D028341 1.1e-08 65.5 44 68.2
Oeu044350.1 Olea europaea HOM05D003933 ORTHO05D004746 1.1e-08 65.5 125 35.2
BcaC03g18034 Brassica carinata HOM05D003933 ORTHO05D004746 1.4e-06 58.5 190 24.7


User provided reference genes

Program Settings