Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0318 Selaginella moellendorffii HOM05D004457 ORTHO05D005282 4.8e-154 547.7 267 100.0
Mapoly0043s0014 Marchantia polymorpha HOM05D004457 ORTHO05D005282 3.8e-66 255.8 248 50.8
AagrBONN_evm.TU.Sc2ySwM_228.2639 Anthoceros agrestis HOM05D004457 ORTHO05D005282 4.9e-58 228.8 223 51.6
Pp3c11_5580 Physcomitrium patens HOM05D004457 ORTHO05D005282 1.6e-56 223.8 260 43.8
Pp3c10_23490 Physcomitrium patens HOM05D004457 ORTHO05D005282 5.1e-55 218.8 230 46.1
COL.COLO4_15192 Corchorus olitorius HOM05D004457 ORTHO05D005282 1.1e-36 157.9 217 40.6
SEGI_39651 Sequoiadendron giganteum HOM05D004457 ORTHO05D005282 1.4e-36 157.5 211 36.5
TWI60G0869 Tripterygium wilfordii HOM05D004457 ORTHO05D005282 3.1e-36 156.4 217 37.8
MELO3C021859.2 Cucumis melo HOM05D004457 ORTHO05D005282 6.9e-36 155.2 240 37.1
Potri.013G079101 Populus trichocarpa HOM05D004457 ORTHO05D005282 6.9e-36 155.2 217 37.3
Potri.013G079201 Populus trichocarpa HOM05D004457 ORTHO05D005282 6.9e-36 155.2 217 37.3
PGR142G0056 Punica granatum HOM05D004457 ORTHO05D005282 9.1e-36 154.8 218 38.1
AL2G19640 Arabidopsis lyrata HOM05D004457 ORTHO05D005282 1.2e-35 154.5 214 36.9
AT1G65020 Arabidopsis thaliana HOM05D004457 ORTHO05D005282 1.5e-35 154.1 214 36.9
ClCG09G017170 Citrullus lanatus HOM05D004457 ORTHO05D005282 1.5e-35 154.1 240 36.7
CsaV3_2G036630 Cucumis sativus L. HOM05D004457 ORTHO05D005282 1.5e-35 154.1 240 37.1
Manes.09G128300 Manihot esculenta HOM05D004457 ORTHO05D005282 2.6e-35 153.3 215 36.7
Eucgr.K00073 Eucalyptus grandis HOM05D004457 ORTHO05D005282 3.4e-35 152.9 212 38.2
BraA07t30901Z Brassica rapa HOM05D004457 ORTHO05D005282 4.5e-35 152.5 235 35.7
Gorai.004G256600 Gossypium raimondii HOM05D004457 ORTHO05D005282 5.9e-35 152.1 219 38.4
Sed0007489 Sechium edule HOM05D004457 ORTHO05D005282 5.9e-35 152.1 236 36.9
CiPaw.06G035200 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.0e-34 151.4 218 36.7
Sabra13G0073500 Salix brachista HOM05D004457 ORTHO05D005282 1.3e-34 151.0 217 36.4
VMungo1215G3184 Vigna mungo HOM05D004457 ORTHO05D005282 1.3e-34 151.0 217 35.9
CiPaw.06G035100 Carya illinoinensis HOM05D004457 ORTHO05D005282 1.7e-34 150.6 237 35.9
LjContig00222g0016666 Lotus japonicus HOM05D004457 ORTHO05D005282 1.7e-34 150.6 216 37.5
Psat2g189240 Pisum sativum HOM05D004457 ORTHO05D005282 1.7e-34 150.6 210 38.1
Cpa.g.sc43.116 Carica papaya HOM05D004457 ORTHO05D005282 2.2e-34 150.2 217 35.9
Gohir.D08G241200 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.2e-34 150.2 219 38.4
Thecc.05G219000 Theobroma cacao HOM05D004457 ORTHO05D005282 2.2e-34 150.2 217 38.2
Gohir.A08G221660 Gossypium hirsutum HOM05D004457 ORTHO05D005282 2.9e-34 149.8 251 35.9
Atru.chr12.1918 Acer truncatum HOM05D004457 ORTHO05D005282 3.8e-34 149.4 217 35.9
C06p38960 Brassica napus HOM05D004457 ORTHO05D005282 5.0e-34 149.1 235 36.6
BolC6t38988H Brassica oleracea HOM05D004457 ORTHO05D005282 5.0e-34 149.1 235 36.6
BraA02t06354Z Brassica rapa HOM05D004457 ORTHO05D005282 5.0e-34 149.1 234 34.6
RcHm_v2.0_Chr1g0384491 Rosa chinensis HOM05D004457 ORTHO05D005282 5.0e-34 149.1 213 37.1
unitig_90.g27538 Utricularia gibba HOM05D004457 ORTHO05D005282 5.0e-34 149.1 214 36.9
CiPaw.05G214800 Carya illinoinensis HOM05D004457 ORTHO05D005282 6.5e-34 148.7 217 37.3
Prupe.2G328100 Prunus persica HOM05D004457 ORTHO05D005282 6.5e-34 148.7 211 37.4
Carub.0002s1019 Capsella rubella HOM05D004457 ORTHO05D005282 8.5e-34 148.3 215 35.8
Lsat_1_v5_gn_8_3720 Lactuca sativa HOM05D004457 ORTHO05D005282 8.5e-34 148.3 216 33.3
TAR375G0461 Trochodendron aralioides HOM05D004457 ORTHO05D005282 8.5e-34 148.3 216 36.6
Ciclev10021193m.g Citrus clementina HOM05D004457 ORTHO05D005282 1.1e-33 147.9 207 36.7
CSS0045385 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 1.9e-33 147.1 217 36.4
Phvul.002G041000 Phaseolus vulgaris HOM05D004457 ORTHO05D005282 1.9e-33 147.1 217 35.9
Sp5g19410 Schrenkiella parvula HOM05D004457 ORTHO05D005282 1.9e-33 147.1 235 34.5
Cfa016064 Carpinus fangiana HOM05D004457 ORTHO05D005282 2.5e-33 146.7 217 36.4
SalBow2G1767 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.5e-33 146.7 213 36.6
Gohir.A02G127500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.2e-33 146.0 219 36.5
Gohir.D03G053500 Gossypium hirsutum HOM05D004457 ORTHO05D005282 4.2e-33 146.0 219 36.5
CSS0037309 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 5.5e-33 145.6 217 36.4
CsaV3_3G050090 Cucumis sativus L. HOM05D004457 ORTHO05D005282 5.5e-33 145.6 236 35.6
PSO063G5530 Papaver somniferum HOM05D004457 ORTHO05D005282 5.5e-33 145.6 215 34.4
CSS0031792 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.2e-33 145.2 217 35.0
CSS0048555 Camellia sinensis var. sinensis HOM05D004457 ORTHO05D005282 7.2e-33 145.2 217 35.0
Glyma.01G233500 Glycine max HOM05D004457 ORTHO05D005282 9.4e-33 144.8 207 34.8
Glyma.11G009300 Glycine max HOM05D004457 ORTHO05D005282 9.4e-33 144.8 215 34.4
GSVIVG01024347001 Vitis vinifera HOM05D004457 ORTHO05D005282 9.4e-33 144.8 206 36.4
BolC2t08250H Brassica oleracea HOM05D004457 ORTHO05D005282 1.2e-32 144.4 236 34.3
THA.LOC104805712 Tarenaya hassleriana HOM05D004457 ORTHO05D005282 1.6e-32 144.1 216 36.1
Aqoxy3G02297 Aquilegia oxysepala HOM05D004457 ORTHO05D005282 2.1e-32 143.7 217 37.8
Gorai.003G055700 Gossypium raimondii HOM05D004457 ORTHO05D005282 2.1e-32 143.7 219 36.1
SalBow4G0372 Salvia bowleyana HOM05D004457 ORTHO05D005282 2.1e-32 143.7 208 35.6
FvH4_7g34140 Fragaria vesca HOM05D004457 ORTHO05D005282 2.7e-32 143.3 212 35.8
Nn6g33553 Nelumbo nucifera HOM05D004457 ORTHO05D005282 2.7e-32 143.3 215 34.9
SalBow4G0893 Salvia bowleyana HOM05D004457 ORTHO05D005282 3.6e-32 142.9 208 35.1
Haze_00385 Corylus avellana HOM05D004457 ORTHO05D005282 6.1e-32 142.1 217 35.0
Lalb_Chr09g0320121 Lupinus albus HOM05D004457 ORTHO05D005282 6.1e-32 142.1 217 36.4
PSO782G5560 Papaver somniferum HOM05D004457 ORTHO05D005282 6.1e-32 142.1 215 34.0
Medtr5g007360 Medicago truncatula HOM05D004457 ORTHO05D005282 7.9e-32 141.7 209 37.3
Ca_24434_v3 Cicer arietinum L. HOM05D004457 ORTHO05D005282 1.4e-31 141.0 217 35.9
AUR62028201 Chenopodium quinoa HOM05D004457 ORTHO05D005282 1.8e-31 140.6 207 36.7
Cc02_g00170 Coffea canephora HOM05D004457 ORTHO05D005282 3.0e-31 139.8 216 34.3
HanXRQChr04g0105271 Helianthus annuus HOM05D004457 ORTHO05D005282 3.9e-31 139.4 218 33.5
Nitab4.5_0004530g0100 Nicotiana tabacum HOM05D004457 ORTHO05D005282 3.9e-31 139.4 215 33.5
MSTRG.26922 Avicennia marina HOM05D004457 ORTHO05D005282 5.1e-31 139.0 213 35.7
CAN.G1131.28 Capsicum annuum HOM05D004457 ORTHO05D005282 5.1e-31 139.0 215 33.5
FAN10G1543 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.1e-31 139.0 249 33.3
FAN28G1138 Fragaria x ananassa HOM05D004457 ORTHO05D005282 5.1e-31 139.0 213 36.2
Hma1.2p1_0419F.1_g149440 Hydrangea macrophylla HOM05D004457 ORTHO05D005282 5.1e-31 139.0 203 36.0
MD07G1310300 Malus domestica HOM05D004457 ORTHO05D005282 6.7e-31 138.7 210 36.7
Hund21100 Selenicereus undatus HOM05D004457 ORTHO05D005282 6.7e-31 138.7 215 34.4
EL10Ac3g05054 Beta vulgaris HOM05D004457 ORTHO05D005282 8.8e-31 138.3 207 35.7
Thhalv10022467m.g Eutrema salsugineum HOM05D004457 ORTHO05D005282 8.8e-31 138.3 214 33.6
Oeu062823.1 Olea europaea HOM05D004457 ORTHO05D005282 1.1e-30 137.9 211 33.6
MD01G1237700 Malus domestica HOM05D004457 ORTHO05D005282 1.5e-30 137.5 210 35.7
Actinidia08758 Actinidia chinensis HOM05D004457 ORTHO05D005282 2.6e-30 136.7 217 34.1
MSTRG.8 Avicennia marina HOM05D004457 ORTHO05D005282 2.6e-30 136.7 211 33.2
CiPaw.06G035000 Carya illinoinensis HOM05D004457 ORTHO05D005282 2.6e-30 136.7 223 35.0
arahy.Tifrunner.gnm1.ann1.R5JYMV Arachis hypogaea HOM05D004457 ORTHO05D005282 3.3e-30 136.3 215 32.6
PSO541G4777 Papaver somniferum HOM05D004457 ORTHO05D005282 5.7e-30 135.6 229 34.1
Actinidia34324 Actinidia chinensis HOM05D004457 ORTHO05D005282 7.4e-30 135.2 217 32.7
Nitab4.5_0000021g0740 Nicotiana tabacum HOM05D004457 ORTHO05D005282 7.4e-30 135.2 215 32.6
Zm00001eb024890 Zea mays HOM05D004457 ORTHO05D005282 7.4e-30 135.2 207 33.8
BcaB05g25319 Brassica carinata HOM05D004457 ORTHO05D005282 9.7e-30 134.8 242 33.5
A02p12980 Brassica napus HOM05D004457 ORTHO05D005282 9.7e-30 134.8 260 31.2
arahy.Tifrunner.gnm1.ann1.9FAL4E Arachis hypogaea HOM05D004457 ORTHO05D005282 1.3e-29 134.4 215 32.1
Migut.F00082 Erythranthe guttata HOM05D004457 ORTHO05D005282 1.3e-29 134.4 211 33.6
Solyc03g097180.3 Solanum lycopersicum HOM05D004457 ORTHO05D005282 1.7e-29 134.0 213 31.5
A07p32750 Brassica napus HOM05D004457 ORTHO05D005282 2.8e-29 133.3 280 30.4
Aa31LG2G2220 Aethionema arabicum HOM05D004457 ORTHO05D005282 4.8e-29 132.5 232 32.8
C02p21100 Brassica napus HOM05D004457 ORTHO05D005282 4.8e-29 132.5 268 30.2
Lj3A885T46 Lonicera japonica HOM05D004457 ORTHO05D005282 4.8e-29 132.5 216 32.9
Peaxi162Scf00516g00661 Petunia axillaris HOM05D004457 ORTHO05D005282 6.3e-29 132.1 215 33.0
HPP92_001524 Vanilla planifolia HOM05D004457 ORTHO05D005282 8.2e-29 131.7 215 32.1
PGSC0003DMG400003162 Solanum tuberosum HOM05D004457 ORTHO05D005282 1.4e-28 131.0 200 31.5
SGA_v2.0_scaffold50G18449 Striga asiatica HOM05D004457 ORTHO05D005282 4.1e-28 129.4 250 29.6
Cfa016063 Carpinus fangiana HOM05D004457 ORTHO05D005282 7.0e-28 128.6 217 34.6
Sc13g0010930 Simmondsia chinensis HOM05D004457 ORTHO05D005282 1.2e-27 127.9 217 35.0
TPR.G37899 Trifolium pratense HOM05D004457 ORTHO05D005282 4.5e-27 125.9 249 31.7
Cfa016062 Carpinus fangiana HOM05D004457 ORTHO05D005282 5.9e-27 125.6 210 33.3
ATR0665G122 Amborella trichopoda HOM05D004457 ORTHO05D005282 7.7e-27 125.2 203 35.5
Nitab4.5_0004268g0020 Nicotiana tabacum HOM05D004457 ORTHO05D005282 2.2e-26 123.6 221 29.0
Oeu015511.1 Olea europaea HOM05D004457 ORTHO05D005282 2.9e-26 123.2 211 31.8
Actinidia28413 Actinidia chinensis HOM05D004457 ORTHO05D005282 8.5e-26 121.7 203 34.0
Haze_00386 Corylus avellana HOM05D004457 ORTHO05D005282 3.6e-24 116.3 238 28.2
Rhsim03G0223200 Rhododendron simsii HOM05D004457 ORTHO05D005282 3.6e-24 116.3 265 27.9
vmacro06531 Vaccinium macrocarpon HOM05D004457 ORTHO05D005282 4.7e-24 115.9 288 27.1
SGA_v2.0_scaffold44G16903 Striga asiatica HOM05D004457 ORTHO05D005282 6.1e-24 115.5 248 29.8
QL09p022526 Quercus lobata HOM05D004457 ORTHO05D005282 8.0e-24 115.2 175 34.9
Lj1A1034G49 Lonicera japonica HOM05D004457 ORTHO05D005282 3.3e-22 109.8 185 31.9
Peaxi162Scf00133g00612 Petunia axillaris HOM05D004457 ORTHO05D005282 3.3e-22 109.8 214 29.0
PSO675G5198 Papaver somniferum HOM05D004457 ORTHO05D005282 4.4e-22 109.4 200 32.0
CDE02G1044 Ceratophyllum demersum HOM05D004457 ORTHO05D005282 1.4e-20 104.4 179 32.4
Duzib106G1483 Durio zibethinus HOM05D004457 ORTHO05D005282 1.3e-18 97.8 212 29.2
Sed0022448 Sechium edule HOM05D004457 ORTHO05D005282 1.3e-18 97.8 168 35.7
FAN01G1413 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.2e-18 97.1 212 31.6
CARHR056470 Cardamine hirsuta HOM05D004457 ORTHO05D005282 6.1e-16 89.0 139 35.3
ClCG09G013110 Citrullus lanatus HOM05D004457 ORTHO05D005282 8.8e-15 85.1 109 38.5
ECA233G5338 Erigeron canadensis HOM05D004457 ORTHO05D005282 2.2e-13 80.5 122 32.8
BolC4t27312H Brassica oleracea HOM05D004457 ORTHO05D005282 3.7e-13 79.7 111 38.7
Migut.F00937 Erythranthe guttata HOM05D004457 ORTHO05D005282 4.8e-13 79.3 104 33.7
Hund09804 Selenicereus undatus HOM05D004457 ORTHO05D005282 5.4e-12 75.9 99 38.4
ClCG09G013130 Citrullus lanatus HOM05D004457 ORTHO05D005282 2.7e-11 73.6 138 31.2
Gohir.A08G097750 Gossypium hirsutum HOM05D004457 ORTHO05D005282 7.7e-11 72.0 205 27.8
Medtr3g091660 Medicago truncatula HOM05D004457 ORTHO05D005282 5.0e-10 69.3 84 39.3
FAN03G1923 Fragaria x ananassa HOM05D004457 ORTHO05D005282 2.5e-09 67.0 106 33.0
Dinv29137 Davidia involucrata HOM05D004457 ORTHO05D005282 3.2e-09 66.6 87 37.9
BcaC02g08145 Brassica carinata HOM05D004457 ORTHO05D005282 9.4e-09 65.1 75 42.7
FAN25G0067 Fragaria x ananassa HOM05D004457 ORTHO05D005282 1.4e-07 61.2 214 27.1
Nitab4.5_0000338g0060 Nicotiana tabacum HOM05D004457 ORTHO05D005282 1.4e-07 61.2 104 28.8
Dinv29138 Davidia involucrata HOM05D004457 ORTHO05D005282 3.0e-07 60.1 60 40.0
AUR62002084 Chenopodium quinoa HOM05D004457 ORTHO05D005282 5.2e-07 59.3 75 41.3
Sopen03g027920 Solanum pennellii HOM05D004457 ORTHO05D005282 6.8e-07 58.9 60 40.0
Gohir.A08G102425 Gossypium hirsutum HOM05D004457 ORTHO05D005282 3.4e-06 56.6 68 36.8


User provided reference genes

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