Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0311 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 0.0e+00 1780.4 885 100.0
SMO112G0081 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 0.0e+00 1545.4 873 89.9
SMO364G0221 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.1e-303 1046.6 790 71.3
SMO364G0066 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.1e-276 956.8 705 72.1
SMO112G0116 Selaginella moellendorffii HOM05D016263 ORTHO05D003616 1.4e-271 939.9 741 68.8
SMO112G0059 Selaginella moellendorffii HOM05D016263 ORTHO05D377983 2.8e-142 510.4 365 77.8
SMO112G0011 Selaginella moellendorffii HOM05D016263 ORTHO05D379149 2.3e-80 304.7 340 53.5
SMO137G0302 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 3.1e-32 144.8 520 28.8
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.2e-30 138.7 515 28.9
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.9e-29 135.6 440 27.7
Mapoly0063s0022 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.5e-29 134.0 388 29.9
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 6.1e-28 130.6 561 26.2
SEGI_00508 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 6.1e-28 130.6 563 29.1
SEGI_35950 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 6.1e-28 130.6 563 29.1
Pp3c16_17020 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.3e-27 128.6 560 26.6
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.7e-26 124.0 493 26.0
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.7e-26 123.2 538 26.8
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.7e-26 123.2 523 26.8
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 4.8e-25 120.9 398 27.6
SEGI_33704 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 8.2e-25 120.2 370 29.7
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 1.1e-24 119.8 406 28.8
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 2.4e-24 118.6 377 28.4
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 3.1e-24 118.2 383 27.7
SMO196G0261 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 4.1e-24 117.9 376 30.1
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 4.1e-24 117.9 394 27.7
Mapoly0052s0121 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.3e-24 117.5 523 27.0
Mapoly0028s0125 Marchantia polymorpha HOM05D003388 ORTHO05D003616 6.9e-24 117.1 392 28.3
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 6.9e-24 117.1 398 27.4
SEGI_40344 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 9.1e-24 116.7 610 26.9
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 2.0e-23 115.5 400 27.5
Pp3c2_8360 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.0e-23 115.5 458 24.5
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 3.4e-23 114.8 401 27.4
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 7.7e-23 113.6 389 27.0
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 1.3e-22 112.8 405 26.7
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 1.7e-22 112.5 401 26.7
Pp3c17_14770 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.9e-22 111.7 458 25.1
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 3.8e-22 111.3 388 27.6
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 3.8e-22 111.3 391 28.1
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 5.0e-22 110.9 387 26.1
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.0e-22 110.9 623 24.9
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 6.5e-22 110.5 391 27.6
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 8.5e-22 110.2 410 27.6
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 1.1e-21 109.8 394 27.4
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 1.1e-21 109.8 408 26.2
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 1.1e-21 109.8 398 27.1
SMO228G0086 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.4e-21 109.4 500 25.4
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 1.4e-21 109.4 389 26.7
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 1.9e-21 109.0 392 27.0
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 1.9e-21 109.0 406 24.9
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 1.9e-21 109.0 405 25.9
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 2.5e-21 108.6 395 26.6
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 3.2e-21 108.2 402 25.4
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 3.2e-21 108.2 393 27.0
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 4.2e-21 107.8 393 27.0
Mapoly0033s0081 Marchantia polymorpha HOM05D003388 ORTHO05D003616 4.2e-21 107.8 455 25.7
AagrBONN_evm.TU.Sc2ySwM_362.2583 Anthoceros agrestis HOM05D003388 ORTHO05D003616 5.5e-21 107.5 424 25.9
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 5.5e-21 107.5 391 27.6
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 5.5e-21 107.5 347 26.8
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 5.5e-21 107.5 400 26.0
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 7.2e-21 107.1 394 25.9
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 7.2e-21 107.1 375 28.0
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 7.2e-21 107.1 391 27.6
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 7.2e-21 107.1 391 27.6
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 7.2e-21 107.1 394 27.2
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 7.2e-21 107.1 398 26.4
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 9.4e-21 106.7 393 26.2
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 9.4e-21 106.7 392 26.3
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 9.4e-21 106.7 399 28.1
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 1.2e-20 106.3 393 26.7
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 1.2e-20 106.3 398 26.1
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 1.6e-20 105.9 398 27.1
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 1.6e-20 105.9 393 26.7
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 1.6e-20 105.9 391 27.1
Mapoly0045s0136 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.6e-20 105.9 468 25.6
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 1.6e-20 105.9 389 27.2
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 2.1e-20 105.5 403 26.1
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 2.1e-20 105.5 399 26.3
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 2.1e-20 105.5 401 25.2
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 2.1e-20 105.5 399 26.3
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 2.7e-20 105.1 395 26.1
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 2.7e-20 105.1 400 26.8
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 2.7e-20 105.1 400 26.8
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 2.7e-20 105.1 384 25.0
SMO364G0457 Selaginella moellendorffii HOM05D016263 ORTHO05D376577 2.7e-20 105.1 82 65.9
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 3.6e-20 104.8 389 27.5
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 3.6e-20 104.8 407 25.6
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 3.6e-20 104.8 404 25.7
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 4.7e-20 104.4 392 26.0
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 4.7e-20 104.4 398 25.9
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 1.0e-19 103.2 394 25.4
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 1.0e-19 103.2 406 25.6
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 1.4e-19 102.8 398 25.4
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.8e-19 102.4 401 24.7
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.8e-19 102.4 401 24.9
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 1.8e-19 102.4 400 25.5
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 1.8e-19 102.4 395 26.3
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 2.3e-19 102.1 411 24.8
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 3.9e-19 101.3 399 24.1
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 3.9e-19 101.3 399 24.1
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 3.9e-19 101.3 403 25.6
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 6.7e-19 100.5 394 24.1
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 6.7e-19 100.5 404 25.2
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 6.7e-19 100.5 399 25.8
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 6.7e-19 100.5 398 25.4
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 8.8e-19 100.1 402 25.4
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 1.1e-18 99.8 383 27.2
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 2.6e-18 98.6 386 25.6
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 2.6e-18 98.6 474 25.1
SMO347G0589 Selaginella moellendorffii HOM05D002508 ORTHO05D003616 2.6e-18 98.6 337 28.2
CDE07G1327 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 3.3e-18 98.2 380 26.1
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 7.4e-18 97.1 405 24.4
SMO276G0050 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 9.7e-18 96.7 436 23.6
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 9.7e-18 96.7 507 22.9
Solyc05g007760.2 Solanum lycopersicum HOM05D003388 ORTHO05D003616 9.7e-18 96.7 367 25.6
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 1.3e-17 96.3 404 25.7
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 1.3e-17 96.3 398 25.4
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 1.7e-17 95.9 413 24.7
AagrBONN_evm.TU.Sc2ySwM_362.1319 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.2e-17 95.5 502 25.7
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 3.7e-17 94.7 350 26.6
SEGI_24693 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.8e-17 94.4 398 23.4
AagrBONN_evm.TU.Sc2ySwM_362.2588 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.3e-17 94.0 354 27.1
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 8.2e-17 93.6 385 27.5
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.1e-16 93.2 387 24.0
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 1.4e-16 92.8 406 25.6
Mapoly0058s0063 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.8e-16 92.4 498 23.9
MCO03G599 Micromonas commoda HOM05D003388 ORTHO05D003616 1.8e-16 92.4 367 27.5
Mapoly0045s0135 Marchantia polymorpha HOM05D003388 ORTHO05D003616 2.4e-16 92.0 405 26.9
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 7.0e-16 90.5 392 24.5
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 1.6e-15 89.4 392 24.2
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 7.7e-15 87.0 250 26.0
SMO171G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.3e-14 86.3 319 31.3
Mapoly0009s0129 Marchantia polymorpha HOM05D003388 ORTHO05D003616 2.9e-14 85.1 395 24.1
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 5.0e-14 84.3 226 27.4
AagrBONN_evm.TU.Sc2ySwM_228.5463 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.5e-14 84.0 351 25.6
HPP92_007854 Vanilla planifolia HOM05D003388 ORTHO05D003616 1.5e-13 82.8 274 26.3
AagrBONN_evm.TU.Sc2ySwM_228.5461 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.9e-13 82.4 281 26.7
SEGI_15178 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.9e-13 82.4 477 25.6
AagrBONN_evm.TU.Sc2ySwM_362.2541 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.5e-13 82.0 291 26.5
AagrBONN_evm.TU.Sc2ySwM_228.716 Anthoceros agrestis HOM05D013582 ORTHO05D003616 1.8e-11 75.9 545 24.0
AagrBONN_evm.TU.Sc2ySwM_368.1893 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.3e-11 75.5 536 21.6
FAN17G1342 Fragaria x ananassa HOM05D003388 ORTHO05D003616 4.4e-10 71.2 183 27.9
AagrBONN_evm.TU.Sc2ySwM_344.118 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.7e-09 69.3 294 25.2
SEGI_01320 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.1e-08 66.6 286 24.1
Oeu005759.1 Olea europaea HOM05D003388 ORTHO05D003616 7.0e-08 63.9 222 23.4
MBI13_g11342_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 4.5e-07 61.2 249 25.3
SMO361G0817 Selaginella moellendorffii HOM05D021614 ORTHO05D026683 1.7e-06 59.3 208 30.8
SEGI_38646 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.2e-06 58.9 287 24.4
AagrBONN_evm.TU.Sc2ySwM_344.117 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.5e-06 57.4 233 28.3


User provided reference genes

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