Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0259 Selaginella moellendorffii HOM05D006342 ORTHO05D008155 2.1e-152 542.3 282 100.0
Mapoly0112s0045 Marchantia polymorpha HOM05D006342 ORTHO05D008155 1.5e-97 360.1 285 66.3
Pp3c15_22700 Physcomitrium patens HOM05D006342 ORTHO05D008155 1.3e-96 357.1 283 65.0
Peaxi162Scf01060g00128 Petunia axillaris HOM05D006342 ORTHO05D008155 4.5e-94 348.6 281 62.6
Sopen01g047960 Solanum pennellii HOM05D006342 ORTHO05D008155 4.5e-94 348.6 281 63.3
Lj4g0023834 Lotus japonicus HOM05D006342 ORTHO05D008155 5.0e-93 345.1 285 62.8
Lalb_Chr05g0217591 Lupinus albus HOM05D006342 ORTHO05D008155 1.1e-92 344.0 285 62.8
Nitab4.5_0003959g0010 Nicotiana tabacum HOM05D006342 ORTHO05D008155 1.1e-92 344.0 281 62.6
Actinidia24004 Actinidia chinensis HOM05D006342 ORTHO05D008155 1.9e-92 343.2 281 61.9
Hma1.2p1_0522F.1_g171800 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 1.9e-92 343.2 281 61.9
CAN.G523.45 Capsicum annuum HOM05D006342 ORTHO05D008155 2.5e-92 342.8 281 60.9
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 3.2e-92 342.4 283 63.6
Cc02_g21250 Coffea canephora HOM05D006342 ORTHO05D008155 3.2e-92 342.4 281 61.6
Nitab4.5_0000863g0140 Nicotiana tabacum HOM05D006342 ORTHO05D008155 3.2e-92 342.4 281 61.9
CSS0025541 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 4.2e-92 342.0 281 62.6
TPR.G35344 Trifolium pratense HOM05D006342 ORTHO05D008155 4.2e-92 342.0 283 63.6
ECA234G3624 Erigeron canadensis HOM05D006342 ORTHO05D008155 7.2e-92 341.3 286 62.2
HanXRQChr10g0303621 Helianthus annuus HOM05D006342 ORTHO05D008155 1.6e-91 340.1 284 63.4
Lsat_1_v5_gn_5_108680 Lactuca sativa HOM05D006342 ORTHO05D008155 1.6e-91 340.1 284 62.7
Medtr4g094100 Medicago truncatula HOM05D006342 ORTHO05D008155 1.6e-91 340.1 286 61.5
Psat7g100320 Pisum sativum HOM05D006342 ORTHO05D008155 1.6e-91 340.1 285 62.1
VMungo0251G1514 Vigna mungo HOM05D006342 ORTHO05D008155 1.6e-91 340.1 285 62.5
Dinv24174 Davidia involucrata HOM05D006342 ORTHO05D008155 3.6e-91 339.0 279 63.8
Sabra17G0037300 Salix brachista HOM05D006342 ORTHO05D008155 3.6e-91 339.0 284 62.3
SGA_v2.0_scaffold83G26327 Striga asiatica HOM05D006342 ORTHO05D008155 6.1e-91 338.2 280 63.2
Gorai.005G222500 Gossypium raimondii HOM05D006342 ORTHO05D008155 8.0e-91 337.8 284 62.3
PGR042G1699 Punica granatum HOM05D006342 ORTHO05D008155 1.0e-90 337.4 285 62.5
Gohir.D02G198600 Gossypium hirsutum HOM05D006342 ORTHO05D008155 2.3e-90 336.3 284 62.0
Rhsim11G0137800 Rhododendron simsii HOM05D006342 ORTHO05D008155 3.0e-90 335.9 281 61.9
RhsimUnG0187900 Rhododendron simsii HOM05D006342 ORTHO05D008155 4.0e-90 335.5 281 61.9
Glyma.13G042800 Glycine max HOM05D006342 ORTHO05D008155 5.2e-90 335.1 285 62.1
Carub.0002s0473 Capsella rubella HOM05D006342 ORTHO05D008155 6.8e-90 334.7 285 60.0
Lj9A350G66 Lonicera japonica HOM05D006342 ORTHO05D008155 6.8e-90 334.7 288 62.2
Potri.017G050900 Populus trichocarpa HOM05D006342 ORTHO05D008155 8.8e-90 334.3 284 62.0
PGSC0003DMG400012575 Solanum tuberosum HOM05D006342 ORTHO05D008155 8.8e-90 334.3 281 60.9
TAR628G1271 Trochodendron aralioides HOM05D006342 ORTHO05D008155 1.2e-89 334.0 284 60.6
Gohir.A03G175100 Gossypium hirsutum HOM05D006342 ORTHO05D008155 1.5e-89 333.6 284 61.3
Prupe.8G064500 Prunus persica HOM05D006342 ORTHO05D008155 1.5e-89 333.6 285 60.7
MELO3C018621.2 Cucumis melo HOM05D006342 ORTHO05D008155 2.0e-89 333.2 285 62.5
CsaV3_7G006740 Cucumis sativus L. HOM05D006342 ORTHO05D008155 2.6e-89 332.8 285 62.1
QL11p022820 Quercus lobata HOM05D006342 ORTHO05D008155 2.6e-89 332.8 285 61.4
PSO447G0017 Papaver somniferum HOM05D006342 ORTHO05D008155 3.4e-89 332.4 285 61.8
Ciclev10028615m.g Citrus clementina HOM05D006342 ORTHO05D008155 4.4e-89 332.0 284 60.2
Nn5g30026 Nelumbo nucifera HOM05D006342 ORTHO05D008155 4.4e-89 332.0 284 60.6
Aa31LG2G9860 Aethionema arabicum HOM05D006342 ORTHO05D008155 5.7e-89 331.6 285 60.0
Manes.07G034700 Manihot esculenta HOM05D006342 ORTHO05D008155 5.7e-89 331.6 284 60.6
Thecc.02G134500 Theobroma cacao HOM05D006342 ORTHO05D008155 5.7e-89 331.6 284 60.9
GSVIVG01015772001 Vitis vinifera HOM05D006342 ORTHO05D008155 9.8e-89 330.9 284 60.9
Eucgr.G00932 Eucalyptus grandis HOM05D006342 ORTHO05D008155 1.7e-88 330.1 285 60.4
Glyma.08G070600 Glycine max HOM05D006342 ORTHO05D008155 1.7e-88 330.1 285 60.7
EL10Ac9g21517 Beta vulgaris HOM05D006342 ORTHO05D008155 3.7e-88 328.9 285 59.3
DCAR_003711 Daucus carota HOM05D006342 ORTHO05D008155 3.7e-88 328.9 282 60.6
Os03g0190100 Oryza sativa ssp. japonica HOM05D006342 ORTHO05D008155 3.7e-88 328.9 288 60.8
Thhalv10023528m.g Eutrema salsugineum HOM05D006342 ORTHO05D008155 4.8e-88 328.6 285 58.6
RcHm_v2.0_Chr2g0143381 Rosa chinensis HOM05D006342 ORTHO05D008155 6.3e-88 328.2 285 60.7
AL2G16000 Arabidopsis lyrata HOM05D006342 ORTHO05D008155 8.3e-88 327.8 285 58.6
Duzib052G0010 Durio zibethinus HOM05D006342 ORTHO05D008155 1.1e-87 327.4 312 55.8
AUR62010160 Chenopodium quinoa HOM05D006342 ORTHO05D008155 1.4e-87 327.0 285 59.3
Migut.B00584 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.4e-87 327.0 281 61.2
AT1G60600 Arabidopsis thaliana HOM05D006342 ORTHO05D008155 1.8e-87 326.6 285 58.9
arahy.Tifrunner.gnm1.ann1.U7PRNJ Arachis hypogaea HOM05D006342 ORTHO05D008155 3.1e-87 325.9 290 60.3
Atru.chr6.1184 Acer truncatum HOM05D006342 ORTHO05D008155 4.1e-87 325.5 312 56.7
AUR62013159 Chenopodium quinoa HOM05D006342 ORTHO05D008155 7.0e-87 324.7 285 58.9
MSTRG.16600 Avicennia marina HOM05D006342 ORTHO05D008155 1.2e-86 323.9 281 59.4
FvH4_6g33511 Fragaria vesca HOM05D006342 ORTHO05D008155 1.6e-86 323.6 285 60.0
FAN02G0548 Fragaria x ananassa HOM05D006342 ORTHO05D008155 1.6e-86 323.6 285 60.0
Oeu042410.2 Olea europaea HOM05D006342 ORTHO05D008155 1.6e-86 323.6 281 60.1
TWI23G0792 Tripterygium wilfordii HOM05D006342 ORTHO05D008155 4.5e-86 322.0 285 59.6
BcaB04g20275 Brassica carinata HOM05D006342 ORTHO05D008155 1.7e-85 320.1 285 58.6
A01p29370 Brassica napus HOM05D006342 ORTHO05D008155 2.2e-85 319.7 286 58.0
Sc15g0003050 Simmondsia chinensis HOM05D006342 ORTHO05D008155 2.9e-85 319.3 285 59.3
CANSAT21G1086 Cannabis sativa HOM05D006342 ORTHO05D008155 3.8e-85 318.9 282 58.9
BolC1t03681H Brassica oleracea HOM05D006342 ORTHO05D008155 1.1e-84 317.4 286 57.3
BraA01t03071Z Brassica rapa HOM05D006342 ORTHO05D008155 1.1e-84 317.4 286 57.3
unitig_0.g609 Utricularia gibba HOM05D006342 ORTHO05D008190 1.1e-84 317.4 281 59.8
BcaC09g49390 Brassica carinata HOM05D006342 ORTHO05D008155 1.6e-83 313.5 286 57.0
C01p37160 Brassica napus HOM05D006342 ORTHO05D008155 1.6e-83 313.5 286 57.0
Cpa.g.sc42.26 Carica papaya HOM05D006342 ORTHO05D008155 2.1e-83 313.2 276 59.8
Solyc01g105460.4 Solanum lycopersicum HOM05D006342 ORTHO05D008155 1.8e-82 310.1 252 63.5
Migut.B01155 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.2e-81 307.4 282 56.0
MSTRG.20291 Avicennia marina HOM05D006342 ORTHO05D008155 4.4e-81 305.4 280 57.1
MD10G1052500 Malus domestica HOM05D006342 ORTHO05D008155 5.7e-81 305.1 285 57.5
HPP92_019303 Vanilla planifolia HOM05D006342 ORTHO05D008155 1.3e-80 303.9 315 54.6
SalBow5G5605 Salvia bowleyana HOM05D006342 ORTHO05D008155 8.3e-80 301.2 282 56.7
COL.COLO4_32304 Corchorus olitorius HOM05D006342 ORTHO05D008155 2.4e-79 299.7 261 61.7
THA.LOC104799883 Tarenaya hassleriana HOM05D006342 ORTHO05D008155 3.1e-79 299.3 255 61.6
AagrBONN_evm.TU.Sc2ySwM_228.424 Anthoceros agrestis HOM05D006342 ORTHO05D008155 5.4e-79 298.5 313 54.0
Sabra17G0042600 Salix brachista HOM05D006342 ORTHO05D008155 5.4e-79 298.5 284 57.4
CiPaw.05G033400 Carya illinoinensis HOM05D006342 ORTHO05D008155 1.2e-78 297.4 285 55.8
MBI05_g05612_MAGBIO Magnolia biondii HOM05D006342 ORTHO05D008155 1.2e-78 297.4 284 57.4
Sabra17G0037900 Salix brachista HOM05D006342 ORTHO05D008155 4.5e-78 295.4 284 57.0
ClCG09G015650 Citrullus lanatus HOM05D006342 ORTHO05D008155 1.7e-77 293.5 285 57.2
arahy.Tifrunner.gnm1.ann1.XZGJ82 Arachis hypogaea HOM05D006342 ORTHO05D008155 6.6e-77 291.6 284 57.4
Zm00001eb006830 Zea mays HOM05D006342 ORTHO05D008155 3.3e-76 289.3 290 56.2
Hund06370 Selenicereus undatus HOM05D006342 ORTHO05D008155 3.0e-74 282.7 257 59.1
FAN09G1871 Fragaria x ananassa HOM05D006342 ORTHO05D003187 1.4e-71 273.9 285 53.0
Migut.B01157 Erythranthe guttata HOM05D006342 ORTHO05D008155 1.8e-71 273.5 252 56.0
AagrBONN_evm.TU.Sc2ySwM_117.3744 Anthoceros agrestis HOM05D006342 ORTHO05D008155 3.5e-70 269.2 283 53.4
Oeu000253.3 Olea europaea HOM05D006342 ORTHO05D008155 2.8e-67 259.6 282 51.4
PSO210G1371 Papaver somniferum HOM05D006342 ORTHO05D008155 3.6e-67 259.2 226 61.1
PRCOL_00002739 Prasinoderma coloniale HOM05D006342 ORTHO05D008155 4.9e-64 248.8 293 51.5
vmacro01839 Vaccinium macrocarpon HOM05D006342 ORTHO05D008155 6.4e-64 248.4 329 44.1
CBR_g45392 Chara braunii HOM05D006342 ORTHO05D008155 2.4e-63 246.5 264 48.9
SpUN0430_0010 Schrenkiella parvula HOM05D006342 ORTHO05D008155 7.0e-63 245.0 226 57.1
Ah.01g010100 Amaranthus hybridus HOM05D006342 ORTHO05D008155 1.3e-61 240.7 213 60.1
Phvul.002G210750 Phaseolus vulgaris HOM05D006342 ORTHO05D008155 3.9e-61 239.2 197 61.9
Sed0004067 Sechium edule HOM05D006342 ORTHO05D008155 1.9e-60 236.9 198 62.1
Hma1.2p1_0522F.1_g171810 Hydrangea macrophylla HOM05D006342 ORTHO05D008155 4.3e-60 235.7 190 62.6
QL11p022738 Quercus lobata HOM05D006342 ORTHO05D008155 4.4e-57 225.7 230 57.0
Haze_10585 Corylus avellana HOM05D006342 ORTHO05D008155 2.5e-52 209.9 272 46.7
SEGI_15165 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 1.6e-51 207.2 169 62.1
FAN14G1047 Fragaria x ananassa HOM05D000343 ORTHO05D003187 8.1e-51 204.9 282 43.6
Cre04.g219787 Chlamydomonas reinhardtii HOM05D006342 ORTHO05D008155 2.2e-48 196.8 330 40.6
ATR0918G004 Amborella trichopoda HOM05D006342 ORTHO05D008155 3.5e-38 162.9 272 40.4
Aqoxy5G01924 Aquilegia oxysepala HOM05D006342 ORTHO05D008155 3.5e-30 136.3 120 55.8
SEGI_15059 Sequoiadendron giganteum HOM05D006342 ORTHO05D008155 6.2e-27 125.6 107 60.7
ATR0782G112 Amborella trichopoda HOM05D006342 ORTHO05D008155 1.1e-23 114.8 92 60.9
Glyma.10G123801 Glycine max HOM05D006342 ORTHO05D008155 2.1e-22 110.5 99 57.6
Glyma.16G064700 Glycine max HOM05D006342 ORTHO05D008155 2.1e-22 110.5 99 57.6
CARHR052370 Cardamine hirsuta HOM05D006342 ORTHO05D008155 1.3e-16 91.3 88 50.0
arahy.Tifrunner.gnm1.ann1.6J847D Arachis hypogaea HOM05D006342 ORTHO05D008155 5.5e-15 85.9 93 51.6
arahy.Tifrunner.gnm1.ann1.RT43SE Arachis hypogaea HOM05D006342 ORTHO05D008155 5.5e-15 85.9 93 51.6
arahy.Tifrunner.gnm1.ann1.2FS2S8 Arachis hypogaea HOM05D006342 ORTHO05D008155 1.6e-14 84.3 93 50.5
TAR376G0398 Trochodendron aralioides HOM05D000064 ORTHO05D001307 6.3e-11 72.4 51 60.8
CSS0034348 Camellia sinensis var. sinensis HOM05D006342 ORTHO05D008155 1.5e-09 67.8 91 45.1
arahy.Tifrunner.gnm1.ann1.P2KY5D Arachis hypogaea HOM05D006342 ORTHO05D008155 2.7e-06 57.0 64 48.4


User provided reference genes

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