Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0175 Selaginella moellendorffii HOM05D004446 ORTHO05D005346 3.3e-80 301.6 145 100.0
Pp3c5_4240 Physcomitrium patens HOM05D004446 ORTHO05D005346 1.4e-35 153.3 135 57.8
Pp3c16_2570 Physcomitrium patens HOM05D004446 ORTHO05D005346 3.5e-34 148.7 135 56.3
AagrBONN_evm.TU.Sc2ySwM_344.5082 Anthoceros agrestis HOM05D004446 ORTHO05D005346 1.1e-32 143.7 133 54.1
CBR_g9031 Chara braunii HOM05D004446 ORTHO05D005346 1.9e-32 142.9 133 52.6
Sc19g0005800 Simmondsia chinensis HOM05D004446 ORTHO05D005346 5.6e-32 141.4 143 49.7
Mapoly0001s0090 Marchantia polymorpha HOM05D004446 ORTHO05D005346 3.7e-31 138.7 133 52.6
Hund19262 Selenicereus undatus HOM05D004446 ORTHO05D005346 3.7e-31 138.7 143 48.3
Dinv38297 Davidia involucrata HOM05D004446 ORTHO05D005346 6.2e-31 137.9 133 51.9
PSO063G0015 Papaver somniferum HOM05D004446 ORTHO05D005346 6.2e-31 137.9 143 49.7
CDE04G3627 Ceratophyllum demersum HOM05D004446 ORTHO05D005346 8.1e-31 137.5 143 49.0
SGA_v2.0_scaffold155G37240 Striga asiatica HOM05D004446 ORTHO05D005346 8.1e-31 137.5 143 49.0
DCAR_027363 Daucus carota HOM05D004446 ORTHO05D005346 1.1e-30 137.1 143 48.3
PSO782G0825 Papaver somniferum HOM05D004446 ORTHO05D005346 1.8e-30 136.3 143 49.0
Nn2g14612 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.4e-30 136.0 143 49.7
SalBow2G1310 Salvia bowleyana HOM05D004446 ORTHO05D005346 2.4e-30 136.0 143 47.6
Aqoxy3G02680 Aquilegia oxysepala HOM05D004446 ORTHO05D005346 3.1e-30 135.6 143 47.6
TAR365G0553 Trochodendron aralioides HOM05D004446 ORTHO05D005346 3.1e-30 135.6 143 49.7
MSTRG.24643 Avicennia marina HOM05D004446 ORTHO05D005346 5.3e-30 134.8 144 49.3
EL10Ac3g06748 Beta vulgaris HOM05D004446 ORTHO05D005346 9.0e-30 134.0 143 46.9
Lalb_Chr01g0011251 Lupinus albus HOM05D004446 ORTHO05D005346 9.0e-30 134.0 143 46.2
AUR62035332 Chenopodium quinoa HOM05D004446 ORTHO05D005346 1.2e-29 133.7 143 46.9
SEGI_11387 Sequoiadendron giganteum HOM05D004446 ORTHO05D005346 1.2e-29 133.7 143 47.6
HanXRQChr14g0434271 Helianthus annuus HOM05D004446 ORTHO05D005346 1.5e-29 133.3 143 46.9
Lalb_Chr03g0036811 Lupinus albus HOM05D004446 ORTHO05D005346 1.5e-29 133.3 143 46.2
Nn5g27558 Nelumbo nucifera HOM05D004446 ORTHO05D005346 2.0e-29 132.9 143 48.3
Cc00_g09360 Coffea canephora HOM05D004446 ORTHO05D005346 2.6e-29 132.5 143 46.9
TAR633G2153 Trochodendron aralioides HOM05D004446 ORTHO05D005346 2.6e-29 132.5 133 51.9
ECA238G1521 Erigeron canadensis HOM05D004446 ORTHO05D005346 3.4e-29 132.1 143 46.9
THA.LOC104826105 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 4.5e-29 131.7 143 45.5
Actinidia35938 Actinidia chinensis HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.2
HanXRQChr06g0183261 Helianthus annuus HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.2
Nitab4.5_0000451g0180 Nicotiana tabacum HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.9
Nitab4.5_0018759g0010 Nicotiana tabacum HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.9
Sp4g15520 Schrenkiella parvula HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.2
Solyc09g091170.4 Solanum lycopersicum HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.2
Sopen09g034140 Solanum pennellii HOM05D004446 ORTHO05D005346 5.8e-29 131.3 143 46.2
AUR62035909 Chenopodium quinoa HOM05D004446 ORTHO05D005346 7.6e-29 131.0 133 49.6
AL1G14310 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 46.2
CARHR003980 Cardamine hirsuta HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 46.2
Eucgr.H02865 Eucalyptus grandis HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 46.9
Thhalv10009042m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 45.5
Peaxi162Scf00047g01619 Petunia axillaris HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 46.2
vmacro00521 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 9.9e-29 130.6 143 45.5
PGR044G1212 Punica granatum HOM05D004446 ORTHO05D005346 1.3e-28 130.2 143 46.2
PGSC0003DMG400011587 Solanum tuberosum HOM05D004446 ORTHO05D005346 1.3e-28 130.2 143 46.2
Zm00001eb008370 Zea mays HOM05D004446 ORTHO05D005346 1.3e-28 130.2 143 46.9
Aa31LG1G20240 Aethionema arabicum HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 44.8
CSS0043422 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 45.5
CSS0044163 Camellia sinensis var. sinensis HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 45.5
Lsat_1_v5_gn_2_41880 Lactuca sativa HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 45.5
Manes.03G155100 Manihot esculenta HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 46.2
THA.LOC104816014 Tarenaya hassleriana HOM05D004446 ORTHO05D005346 1.7e-28 129.8 143 44.8
AT2G33220 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 2.2e-28 129.4 156 44.2
Migut.G00605 Erythranthe guttata HOM05D004446 ORTHO05D005346 2.2e-28 129.4 143 46.9
FvH4_4g05410 Fragaria vesca HOM05D004446 ORTHO05D005346 2.2e-28 129.4 144 46.5
FAN07G2016 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.2e-28 129.4 144 46.5
FAN12G2493 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.2e-28 129.4 144 46.5
FAN12G4338 Fragaria x ananassa HOM05D004446 ORTHO05D005346 2.2e-28 129.4 144 46.5
Aa31LG5G4110 Aethionema arabicum HOM05D004446 ORTHO05D005346 2.9e-28 129.0 143 44.8
ATR0736G077 Amborella trichopoda HOM05D004446 ORTHO05D005346 2.9e-28 129.0 143 47.6
AL4G28840 Arabidopsis lyrata HOM05D004446 ORTHO05D005346 3.8e-28 128.6 143 45.5
BcaB03g13480 Brassica carinata HOM05D004446 ORTHO05D005346 3.8e-28 128.6 143 45.5
CANSAT78G0709 Cannabis sativa HOM05D004446 ORTHO05D005346 3.8e-28 128.6 143 44.8
MD13G1228700 Malus domestica HOM05D004446 ORTHO05D005346 3.8e-28 128.6 144 47.2
Medtr1g046380 Medicago truncatula HOM05D004446 ORTHO05D005346 3.8e-28 128.6 143 46.2
Lj6g0002383 Lotus japonicus HOM05D004446 ORTHO05D005346 4.9e-28 128.3 143 45.5
MD16G1234000 Malus domestica HOM05D004446 ORTHO05D005346 4.9e-28 128.3 144 46.5
Thecc.04G215500 Theobroma cacao HOM05D004446 ORTHO05D005346 4.9e-28 128.3 143 45.5
HPP92_008960 Vanilla planifolia HOM05D004446 ORTHO05D005346 4.9e-28 128.3 143 46.2
CiPaw.02G127900 Carya illinoinensis HOM05D004446 ORTHO05D005346 6.4e-28 127.9 143 44.1
TAR362G0142 Trochodendron aralioides HOM05D004446 ORTHO05D005346 6.4e-28 127.9 143 46.9
BcaC07g36901 Brassica carinata HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
A08p36850 Brassica napus HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
A09p67770 Brassica napus HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
A10p03060 Brassica napus HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
C05p02820 Brassica napus HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
C08p01220 Brassica napus HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
BolC5t29065H Brassica oleracea HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
BolC8t46930H Brassica oleracea HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
BraA08t35586Z Brassica rapa HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
BraA09t42108Z Brassica rapa HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
BraA10t42579Z Brassica rapa HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
CARHR127230 Cardamine hirsuta HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 45.5
Thhalv10017386m.g Eutrema salsugineum HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
RcHm_v2.0_Chr4g0396561 Rosa chinensis HOM05D004446 ORTHO05D005346 8.4e-28 127.5 144 45.8
Sp1g03460 Schrenkiella parvula HOM05D004446 ORTHO05D005346 8.4e-28 127.5 143 44.8
Atru.chr4.1819 Acer truncatum HOM05D004446 ORTHO05D005346 1.1e-27 127.1 143 44.8
AT1G04630 Arabidopsis thaliana HOM05D004446 ORTHO05D005346 1.1e-27 127.1 143 44.8
Carub.0001s0386 Capsella rubella HOM05D004446 ORTHO05D005346 1.1e-27 127.1 143 44.8
Lsat_1_v5_gn_2_41141 Lactuca sativa HOM05D004446 ORTHO05D005346 1.1e-27 127.1 133 48.1
Manes.15G048500 Manihot esculenta HOM05D004446 ORTHO05D005346 1.1e-27 127.1 144 45.8
QL06p022604 Quercus lobata HOM05D004446 ORTHO05D005346 1.4e-27 126.7 143 44.8
Zm00001eb401250 Zea mays HOM05D004446 ORTHO05D005346 1.4e-27 126.7 143 45.5
Duzib212G0284 Durio zibethinus HOM05D004446 ORTHO05D005346 1.9e-27 126.3 143 44.8
Ca_11789_v3 Cicer arietinum L. HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 44.8
Glyma.10G128100 Glycine max HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 44.8
Glyma.20G079400 Glycine max HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 44.8
Gohir.D10G146200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 44.1
TWI73G1246 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 3.2e-27 125.6 143 44.1
Gohir.A10G120100 Gossypium hirsutum HOM05D004446 ORTHO05D005346 4.2e-27 125.2 143 44.8
Gohir.D10G146300 Gossypium hirsutum HOM05D004446 ORTHO05D005346 4.2e-27 125.2 143 44.8
Gorai.011G163400 Gossypium raimondii HOM05D004446 ORTHO05D005346 4.2e-27 125.2 143 44.8
Prupe.1G056200 Prunus persica HOM05D004446 ORTHO05D005346 4.2e-27 125.2 143 44.1
arahy.Tifrunner.gnm1.ann1.Q5T5LU Arachis hypogaea HOM05D004446 ORTHO05D005346 5.5e-27 124.8 136 47.8
arahy.Tifrunner.gnm1.ann1.VC13RQ Arachis hypogaea HOM05D004446 ORTHO05D005346 5.5e-27 124.8 144 45.1
COL.COLO4_05729 Corchorus olitorius HOM05D004446 ORTHO05D005346 5.5e-27 124.8 143 44.1
Phvul.007G238600 Phaseolus vulgaris HOM05D004446 ORTHO05D005346 5.5e-27 124.8 144 45.8
TPR.G23640 Trifolium pratense HOM05D004446 ORTHO05D005346 5.5e-27 124.8 143 45.5
Carub.0004s1468 Capsella rubella HOM05D004446 ORTHO05D005346 7.1e-27 124.4 143 44.1
Gohir.A10G120200 Gossypium hirsutum HOM05D004446 ORTHO05D005346 7.1e-27 124.4 143 43.4
Gorai.011G163300 Gossypium raimondii HOM05D004446 ORTHO05D005346 7.1e-27 124.4 143 44.1
Psat6g109720 Pisum sativum HOM05D004446 ORTHO05D005346 7.1e-27 124.4 143 44.8
Cpa.g.sc59.66 Carica papaya HOM05D004446 ORTHO05D005346 9.3e-27 124.0 143 43.4
CiPaw.01G206200 Carya illinoinensis HOM05D004446 ORTHO05D005346 1.2e-26 123.6 143 42.7
ClCG06G007390 Citrullus lanatus HOM05D004446 ORTHO05D005346 2.7e-26 122.5 143 42.7
CsaV3_2G012290 Cucumis sativus L. HOM05D004446 ORTHO05D005346 2.7e-26 122.5 143 42.7
Potri.001G054500 Populus trichocarpa HOM05D004446 ORTHO05D005346 2.7e-26 122.5 143 43.4
Potri.003G173800 Populus trichocarpa HOM05D004446 ORTHO05D005346 2.7e-26 122.5 143 42.7
Ciclev10006172m.g Citrus clementina HOM05D004446 ORTHO05D005346 3.5e-26 122.1 143 44.1
MELO3C023063.2 Cucumis melo HOM05D004446 ORTHO05D005346 3.5e-26 122.1 143 42.7
Sed0017441 Sechium edule HOM05D004446 ORTHO05D005346 4.6e-26 121.7 144 43.8
VMungo0720G0669 Vigna mungo HOM05D004446 ORTHO05D005346 7.9e-26 120.9 144 45.1
Hma1.2p1_2329F.1_g320020 Hydrangea macrophylla HOM05D004446 ORTHO05D005346 1.8e-25 119.8 174 40.2
Rhsim09G0047000 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.8e-25 119.8 150 42.7
RhsimUnG0181300 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.8e-25 119.8 150 42.7
vmacro22557 Vaccinium macrocarpon HOM05D004446 ORTHO05D005346 1.8e-25 119.8 153 41.8
TWI09G0335 Tripterygium wilfordii HOM05D004446 ORTHO05D005346 3.0e-25 119.0 143 42.0
Os03g0192400 Oryza sativa ssp. japonica HOM05D004446 ORTHO05D005346 9.6e-24 114.0 133 45.1
Actinidia25089 Actinidia chinensis HOM05D004446 ORTHO05D005346 5.3e-22 108.2 177 37.3
Ah.13g075110 Amaranthus hybridus HOM05D004446 ORTHO05D005346 2.6e-21 105.9 143 40.6
BcaC07g42166 Brassica carinata HOM05D004446 ORTHO05D005346 1.0e-20 104.0 143 39.9
MCO16G128 Micromonas commoda HOM05D004446 ORTHO05D005346 1.3e-20 103.6 134 44.8
unitig_748.g8289 Utricularia gibba HOM05D002765 ORTHO05D003083 6.5e-20 101.3 132 44.7
Cre16.g664600 Chlamydomonas reinhardtii HOM05D004446 ORTHO05D005346 1.2e-18 97.1 134 37.3
BolC8t52743H Brassica oleracea HOM05D004446 ORTHO05D005346 2.3e-17 92.8 117 42.7
BolC3t14561H Brassica oleracea HOM05D004446 ORTHO05D005346 1.5e-16 90.1 139 39.6
GSVIVG01028486001 Vitis vinifera HOM05D004446 ORTHO05D005346 2.5e-16 89.4 83 51.8
Dinv27149 Davidia involucrata HOM05D004446 ORTHO05D005346 1.4e-14 83.6 73 54.8
Sabra03G0127300 Salix brachista HOM05D004446 ORTHO05D005346 2.6e-13 79.3 259 24.7
C08p52100 Brassica napus HOM05D004446 ORTHO05D005346 5.0e-12 75.1 88 42.0
CAN.G1588.2 Capsicum annuum HOM05D004446 ORTHO05D005346 4.2e-11 72.0 69 50.7
Oeu008823.1 Olea europaea HOM05D004446 ORTHO05D005346 4.2e-11 72.0 69 50.7
RhsimUnG0181500 Rhododendron simsii HOM05D004446 ORTHO05D005346 1.2e-10 70.5 69 49.3
Sabra01G0039000 Salix brachista HOM05D004446 ORTHO05D005346 3.6e-10 68.9 69 47.8
A03p18650 Brassica napus HOM05D004446 ORTHO05D005346 3.9e-09 65.5 69 44.9
BraA03t11124Z Brassica rapa HOM05D004446 ORTHO05D005346 3.9e-09 65.5 69 44.9
Haze_11535 Corylus avellana HOM05D004446 ORTHO05D005346 5.1e-09 65.1 73 42.5
MBI10_g35300_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 5.7e-08 61.6 149 34.2
Zm00001eb305890 Zea mays HOM05D004446 ORTHO05D005346 2.2e-07 59.7 72 41.7
BcaC01g05851 Brassica carinata HOM05D004446 ORTHO05D005346 2.8e-07 59.3 62 45.2
MBI10_g44933_MAGBIO Magnolia biondii HOM05D004446 ORTHO05D005346 8.2e-07 57.8 63 46.0
Oeu008826.1 Olea europaea HOM05D004446 ORTHO05D005346 3.1e-06 55.8 67 41.8


User provided reference genes

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