Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0168 Selaginella moellendorffii HOM05D007474 ORTHO05D009367 0.0e+00 1288.9 770 100.0
Medtr2g038090 Medicago truncatula HOM05D007474 ORTHO05D009367 2.5e-17 95.1 243 30.0
Psat1g143800 Pisum sativum HOM05D007474 ORTHO05D009367 1.2e-16 92.8 242 29.3
GSVIVG01029310001 Vitis vinifera HOM05D007474 ORTHO05D009367 2.1e-16 92.0 243 30.0
TAR625G0702 Trochodendron aralioides HOM05D007474 ORTHO05D009367 6.1e-16 90.5 243 30.5
Lj6g0008723 Lotus japonicus HOM05D007474 ORTHO05D009367 1.8e-15 89.0 246 29.3
Nn8g40674 Nelumbo nucifera HOM05D007474 ORTHO05D009367 3.0e-15 88.2 243 28.0
Mapoly0011s0196 Marchantia polymorpha HOM05D007474 ORTHO05D009367 6.7e-15 87.0 262 28.6
TPR.G7578 Trifolium pratense HOM05D007474 ORTHO05D009367 1.5e-14 85.9 243 28.0
RcHm_v2.0_Chr4g0399191 Rosa chinensis HOM05D007474 ORTHO05D009367 2.5e-14 85.1 243 27.6
Thhalv10027087m.g Eutrema salsugineum HOM05D007474 ORTHO05D009367 5.7e-14 84.0 243 29.2
Haze_22034 Corylus avellana HOM05D007474 ORTHO05D009367 7.4e-14 83.6 248 28.2
Haze_22037 Corylus avellana HOM05D007474 ORTHO05D009367 7.4e-14 83.6 248 28.2
Duzib170G0522 Durio zibethinus HOM05D007474 ORTHO05D009367 2.8e-13 81.6 243 29.6
FAN17G0817 Fragaria x ananassa HOM05D007474 ORTHO05D009367 2.8e-13 81.6 242 26.9
Cc06_g17460 Coffea canephora HOM05D007474 ORTHO05D009367 6.3e-13 80.5 234 28.6
Dinv41187 Davidia involucrata HOM05D007474 ORTHO05D009367 6.3e-13 80.5 244 28.7
FvH4_4g07070 Fragaria vesca HOM05D007474 ORTHO05D009367 6.3e-13 80.5 243 27.6
PSO063G0774 Papaver somniferum HOM05D007474 ORTHO05D009367 8.2e-13 80.1 240 29.2
Sp7g24050 Schrenkiella parvula HOM05D007474 ORTHO05D009367 8.2e-13 80.1 243 28.4
Carub.0007s1493 Capsella rubella HOM05D007474 ORTHO05D009367 1.1e-12 79.7 243 28.0
Ciclev10010167m.g Citrus clementina HOM05D007474 ORTHO05D009367 1.1e-12 79.7 243 28.0
Manes.02G078300 Manihot esculenta HOM05D007474 ORTHO05D009367 1.1e-12 79.7 245 28.2
Phvul.009G235500 Phaseolus vulgaris HOM05D007474 ORTHO05D009367 1.1e-12 79.7 246 28.0
Thecc.09G187600 Theobroma cacao HOM05D007474 ORTHO05D009367 1.1e-12 79.7 222 28.8
Lalb_Chr23g0276761 Lupinus albus HOM05D007474 ORTHO05D009367 1.4e-12 79.3 246 26.8
VMungo1309G2929 Vigna mungo HOM05D007474 ORTHO05D009367 1.4e-12 79.3 246 27.2
Atru.chr7.945_Atru.chr7.946 Acer truncatum HOM05D007474 ORTHO05D009367 2.4e-12 78.6 243 29.2
A03p56400 Brassica napus HOM05D007474 ORTHO05D009367 3.1e-12 78.2 243 28.0
AT4G26020 Arabidopsis thaliana HOM05D007474 ORTHO05D009367 9.1e-12 76.6 243 27.6
Aqoxy7G02873 Aquilegia oxysepala HOM05D007474 ORTHO05D009367 1.5e-11 75.9 228 29.4
C07p54630 Brassica napus HOM05D007474 ORTHO05D009367 1.5e-11 75.9 243 27.2
Peaxi162Scf00231g01013 Petunia axillaris HOM05D007474 ORTHO05D009367 1.5e-11 75.9 239 27.6
HanXRQChr03g0065461 Helianthus annuus HOM05D007474 ORTHO05D009367 3.4e-11 74.7 243 26.7
MD16G1247400 Malus domestica HOM05D007474 ORTHO05D009367 3.4e-11 74.7 223 26.0
ECA240G4744 Erigeron canadensis HOM05D007474 ORTHO05D009367 5.9e-11 73.9 237 27.0
FAN22G0500 Fragaria x ananassa HOM05D007474 ORTHO05D009367 5.9e-11 73.9 245 26.5
Gohir.A02G011900 Gossypium hirsutum HOM05D007474 ORTHO05D009367 7.7e-11 73.6 248 27.8
Cfa013460 Carpinus fangiana HOM05D007474 ORTHO05D009367 1.0e-10 73.2 243 28.0
Os02g0148600 Oryza sativa ssp. japonica HOM05D007474 ORTHO05D009367 1.3e-10 72.8 238 27.3
CARHR233540 Cardamine hirsuta HOM05D007474 ORTHO05D009367 1.7e-10 72.4 243 26.7
Lsat_1_v5_gn_7_55841 Lactuca sativa HOM05D007474 ORTHO05D009367 2.9e-10 71.6 241 27.8
THA.LOC104813505 Tarenaya hassleriana HOM05D007474 ORTHO05D009367 3.8e-10 71.2 243 27.6
Prupe.1G073900 Prunus persica HOM05D007474 ORTHO05D009367 5.0e-10 70.9 243 25.9
CiPaw.07G198000 Carya illinoinensis HOM05D007474 ORTHO05D009367 6.5e-10 70.5 243 25.9
AL7G26960 Arabidopsis lyrata HOM05D007474 ORTHO05D009367 1.1e-09 69.7 243 27.2
arahy.Tifrunner.gnm1.ann1.0S7KVV Arachis hypogaea HOM05D007474 ORTHO05D009367 1.1e-09 69.7 228 25.9
FAN07G0784 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.4e-09 69.3 225 27.1
Glyma.09G060400 Glycine max HOM05D007474 ORTHO05D009367 1.9e-09 68.9 246 27.2
BolC7t45951H Brassica oleracea HOM05D007474 ORTHO05D009367 2.5e-09 68.6 222 27.0
Aa31LG3G380 Aethionema arabicum HOM05D007474 ORTHO05D009367 4.2e-09 67.8 244 29.5
PGR142G1289 Punica granatum HOM05D007474 ORTHO05D009367 4.2e-09 67.8 250 26.8
arahy.Tifrunner.gnm1.ann1.FGVY1L Arachis hypogaea HOM05D007474 ORTHO05D009367 9.4e-09 66.6 228 25.4
Zm00001eb232320 Zea mays HOM05D007474 ORTHO05D009367 9.4e-09 66.6 238 24.8
Ah.15g097420 Amaranthus hybridus HOM05D004190 ORTHO05D004692 1.2e-08 66.2 57 57.9
FAN12G4033 Fragaria x ananassa HOM05D007474 ORTHO05D009367 1.2e-08 66.2 246 26.4
Hma1.2p1_0235F.1_g098730 Hydrangea macrophylla HOM05D007474 ORTHO05D009367 1.2e-08 66.2 213 28.2
PSO170G3200 Papaver somniferum HOM05D007474 ORTHO05D009367 1.2e-08 66.2 290 24.5
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 1.2e-08 66.2 64 53.1
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 1.2e-08 66.2 96 36.5
Actinidia02497 Actinidia chinensis HOM05D007474 ORTHO05D009367 1.6e-08 65.9 250 27.2
ATR0559G266 Amborella trichopoda HOM05D004190 ORTHO05D004692 1.6e-08 65.9 90 42.2
Mapoly0026s0046 Marchantia polymorpha HOM05D004190 ORTHO05D004692 1.6e-08 65.9 54 57.4
Gohir.D02G012700 Gossypium hirsutum HOM05D007474 ORTHO05D009367 3.6e-08 64.7 243 26.3
Gohir.D05G095900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 3.6e-08 64.7 87 37.9
Cpa.g.sc95.3 Carica papaya HOM05D007474 ORTHO05D009367 4.6e-08 64.3 243 26.7
Nitab4.5_0011174g0010 Nicotiana tabacum HOM05D007474 ORTHO05D009367 4.6e-08 64.3 243 24.7
Rhsim01G0114800 Rhododendron simsii HOM05D007474 ORTHO05D009367 4.6e-08 64.3 254 27.6
TWI63G0256 Tripterygium wilfordii HOM05D007474 ORTHO05D009367 4.6e-08 64.3 239 27.2
BcaB05g22507 Brassica carinata HOM05D004190 ORTHO05D004692 6.1e-08 63.9 71 47.9
BcaC03g14013 Brassica carinata HOM05D004190 ORTHO05D004692 7.9e-08 63.5 86 41.9
BolC2t07349H Brassica oleracea HOM05D004190 ORTHO05D004692 7.9e-08 63.5 86 41.9
C02p12490 Brassica napus HOM05D000173 ORTHO05D000316 1.0e-07 63.2 86 41.9
BraA02t05794Z Brassica rapa HOM05D004190 ORTHO05D004692 1.0e-07 63.2 85 41.2
Gohir.A05G095600 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.0e-07 63.2 87 36.8
Prupe.6G076700 Prunus persica HOM05D004190 ORTHO05D004692 1.0e-07 63.2 88 43.2
SEGI_09707 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.0e-07 63.2 62 51.6
Gorai.009G099200 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.8e-07 62.4 87 36.8
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 1.8e-07 62.4 47 51.1
SalBow3G0001 Salvia bowleyana HOM05D004190 ORTHO05D004692 1.8e-07 62.4 75 48.0
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 1.8e-07 62.4 67 46.3
Potri.001G240100 Populus trichocarpa HOM05D004190 ORTHO05D004692 3.0e-07 61.6 69 50.7
Rhsim01G0114300 Rhododendron simsii HOM05D007474 ORTHO05D009367 3.0e-07 61.6 256 28.9
Sed0018693 Sechium edule HOM05D004190 ORTHO05D004692 3.0e-07 61.6 80 43.8
Sc11g0007970 Simmondsia chinensis HOM05D007474 ORTHO05D009367 3.0e-07 61.6 243 27.2
CAN.G107.39 Capsicum annuum HOM05D007474 ORTHO05D009367 3.9e-07 61.2 239 25.1
Gorai.005G016200 Gossypium raimondii HOM05D007474 ORTHO05D009367 3.9e-07 61.2 249 26.1
Hund18906 Selenicereus undatus HOM05D004190 ORTHO05D004692 3.9e-07 61.2 58 53.4
CiPaw.04G135700 Carya illinoinensis HOM05D004190 ORTHO05D004692 5.1e-07 60.8 72 45.8
Duzib150G1353 Durio zibethinus HOM05D004190 ORTHO05D004692 6.7e-07 60.5 87 34.5
MBI05_g22031_MAGBIO Magnolia biondii HOM05D004190 ORTHO05D004692 8.8e-07 60.1 81 42.0
Nitab4.5_0001135g0020 Nicotiana tabacum HOM05D004190 ORTHO05D004692 8.8e-07 60.1 69 49.3
Peaxi162Scf00224g00513 Petunia axillaris HOM05D004190 ORTHO05D004692 8.8e-07 60.1 85 42.4
Gohir.A13G227300 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-06 59.7 57 49.1
Gohir.D13G232900 Gossypium hirsutum HOM05D004190 ORTHO05D004692 1.1e-06 59.7 57 49.1
Gorai.013G263700 Gossypium raimondii HOM05D004190 ORTHO05D004692 1.1e-06 59.7 57 49.1
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.1e-06 59.7 89 40.4
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 1.5e-06 59.3 48 62.5
BcaC01g06528 Brassica carinata HOM05D004190 ORTHO05D004692 2.0e-06 58.9 61 47.5
C03p13790 Brassica napus HOM05D004190 ORTHO05D004692 2.0e-06 58.9 61 47.5
Cfa011508 Carpinus fangiana HOM05D004190 ORTHO05D004692 2.0e-06 58.9 71 46.5
CDE02G2475 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.0e-06 58.9 50 54.0
CsaV3_1G034280 Cucumis sativus L. HOM05D004190 ORTHO05D004692 2.0e-06 58.9 71 43.7
Gorai.001G110900 Gossypium raimondii HOM05D004190 ORTHO05D004692 2.0e-06 58.9 71 47.9
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 2.0e-06 58.9 53 50.9
MD11G1107500 Malus domestica HOM05D004190 ORTHO05D004692 2.0e-06 58.9 71 42.3
CDE08G1317 Ceratophyllum demersum HOM05D004190 ORTHO05D004692 2.6e-06 58.5 64 48.4
ClCG03G001470 Citrullus lanatus HOM05D004190 ORTHO05D004692 2.6e-06 58.5 80 41.2
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 2.6e-06 58.5 141 34.0
DCAR_014675 Daucus carota HOM05D005719 ORTHO05D007030 2.6e-06 58.5 223 27.8
Potri.009G031100 Populus trichocarpa HOM05D004190 ORTHO05D004692 2.6e-06 58.5 106 39.6
TWI79G1380 Tripterygium wilfordii HOM05D004190 ORTHO05D004692 2.6e-06 58.5 75 49.3
Ah.08g219540 Amaranthus hybridus HOM05D004190 ORTHO05D004692 3.3e-06 58.2 78 44.9
Glyma.16G194400 Glycine max HOM05D003520 ORTHO05D003332 3.3e-06 58.2 42 59.5
Nn2g13344 Nelumbo nucifera HOM05D004190 ORTHO05D004692 3.3e-06 58.2 80 42.5
Nitab4.5_0003516g0050 Nicotiana tabacum HOM05D004190 ORTHO05D004692 3.3e-06 58.2 69 47.8
Sed0024869 Sechium edule HOM05D004190 ORTHO05D004692 4.4e-06 57.8 50 54.0
EL10Ac7g16022 Beta vulgaris HOM05D004190 ORTHO05D004692 5.7e-06 57.4 72 44.4
BolC3t13827H Brassica oleracea HOM05D004190 ORTHO05D004692 5.7e-06 57.4 61 45.9
AUR62012086 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.7e-06 57.4 244 25.8
AUR62039378 Chenopodium quinoa HOM05D007474 ORTHO05D009367 5.7e-06 57.4 243 25.5
Eucgr.J02050 Eucalyptus grandis HOM05D004190 ORTHO05D004692 5.7e-06 57.4 90 41.1
Gohir.D07G103000 Gossypium hirsutum HOM05D004190 ORTHO05D004692 5.7e-06 57.4 71 46.5
Oeu044666.1 Olea europaea HOM05D007474 ORTHO05D009367 5.7e-06 57.4 195 25.1
SEGI_01639 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 5.7e-06 57.4 56 53.6
SEGI_04034 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 5.7e-06 57.4 56 53.6
SEGI_13254 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 5.7e-06 57.4 56 53.6
SEGI_35066 Sequoiadendron giganteum HOM05D016141 ORTHO05D017259 5.7e-06 57.4 56 53.6
MD03G1092700 Malus domestica HOM05D004190 ORTHO05D004692 7.4e-06 57.0 74 39.2
MD07G1267200 Malus domestica HOM05D003520 ORTHO05D003332 7.4e-06 57.0 43 58.1
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 7.4e-06 57.0 85 41.2
PGR119G1862 Punica granatum HOM05D004190 ORTHO05D004692 7.4e-06 57.0 74 45.9
Cpa.g.sc81.141 Carica papaya HOM05D004190 ORTHO05D004692 9.7e-06 56.6 78 43.6
Duzib170G0106 Durio zibethinus HOM05D004190 ORTHO05D004692 9.7e-06 56.6 140 31.4
Thhalv10002683m.g Eutrema salsugineum HOM05D004190 ORTHO05D004692 9.7e-06 56.6 61 45.9


User provided reference genes

Program Settings