Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0152 Selaginella moellendorffii HOM05D013996 ORTHO05D016529 1.6e-149 532.7 262 100.0
Mapoly0211s0016 Marchantia polymorpha HOM05D013996 ORTHO05D016529 1.2e-29 134.4 84 69.0
AagrBONN_evm.TU.Sc2ySwM_117.953 Anthoceros agrestis HOM05D013996 ORTHO05D016529 1.8e-28 130.6 82 70.7
COL.COLO4_34994 Corchorus olitorius HOM05D001204 ORTHO05D001428 7.1e-09 65.5 79 43.0
SMO112G0091 Selaginella moellendorffii HOM05D001204 ORTHO05D001428 9.3e-09 65.1 122 33.6
ClCG03G014040 Citrullus lanatus HOM05D001204 ORTHO05D001428 1.2e-08 64.7 81 43.2
Prupe.6G009900 Prunus persica HOM05D001204 ORTHO05D001428 1.6e-08 64.3 113 33.6
arahy.Tifrunner.gnm1.ann1.6K70BV Arachis hypogaea HOM05D001204 ORTHO05D001428 2.7e-08 63.5 78 44.9
Sed0019444 Sechium edule HOM05D001204 ORTHO05D001428 3.5e-08 63.2 110 37.3
CANSAT11G0737 Cannabis sativa HOM05D001204 ORTHO05D001428 4.6e-08 62.8 85 43.5
PGR083G0397 Punica granatum HOM05D001204 ORTHO05D009253 4.6e-08 62.8 83 41.0
MELO3C015638.2 Cucumis melo HOM05D001204 ORTHO05D001428 7.8e-08 62.0 107 37.4
GSVIVG01025413001 Vitis vinifera HOM05D001204 ORTHO05D001428 7.8e-08 62.0 93 40.9
RcHm_v2.0_Chr5g0081561 Rosa chinensis HOM05D001204 ORTHO05D001428 1.0e-07 61.6 87 42.5
CsaV3_1G042180 Cucumis sativus L. HOM05D001204 ORTHO05D001428 1.3e-07 61.2 100 39.0
SMO364G0558 Selaginella moellendorffii HOM05D001204 ORTHO05D001428 1.3e-07 61.2 101 35.6
Aqoxy279s004 Aquilegia oxysepala HOM05D001204 ORTHO05D001428 1.7e-07 60.8 78 41.0
Aqoxy2G00049 Aquilegia oxysepala HOM05D001204 ORTHO05D001428 1.7e-07 60.8 78 41.0
arahy.Tifrunner.gnm1.ann1.9Z6I10 Arachis hypogaea HOM05D001204 ORTHO05D001428 2.3e-07 60.5 115 38.3
CANSAT11G0424 Cannabis sativa HOM05D001204 ORTHO05D001428 2.3e-07 60.5 92 38.0
MELO3C023502.2 Cucumis melo HOM05D001204 ORTHO05D001428 2.3e-07 60.5 72 43.1
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 2.3e-07 60.5 72 43.1
Lalb_Chr22g0353021 Lupinus albus HOM05D001204 ORTHO05D009253 2.3e-07 60.5 97 37.1
Manes.03G068100 Manihot esculenta HOM05D001204 ORTHO05D001428 2.3e-07 60.5 124 37.1
Mapoly0008s0249 Marchantia polymorpha HOM05D013996 ORTHO05D016529 2.3e-07 60.5 52 57.7
Ciclev10022419m.g Citrus clementina HOM05D001204 ORTHO05D009253 3.0e-07 60.1 108 36.1
Duzib170G0323 Durio zibethinus HOM05D001204 ORTHO05D001428 3.0e-07 60.1 81 39.5
FAN21G2189 Fragaria x ananassa HOM05D001204 ORTHO05D001428 3.0e-07 60.1 86 40.7
Gorai.010G127100 Gossypium raimondii HOM05D001204 ORTHO05D001428 3.0e-07 60.1 80 42.5
MD03G1007900 Malus domestica HOM05D001204 ORTHO05D001428 3.0e-07 60.1 117 34.2
TWI60G0572 Tripterygium wilfordii HOM05D001204 ORTHO05D001428 3.0e-07 60.1 80 40.0
GSVIVG01025408001 Vitis vinifera HOM05D001204 ORTHO05D001428 3.0e-07 60.1 86 41.9
arahy.Tifrunner.gnm1.ann1.MS2B16 Arachis hypogaea HOM05D001204 ORTHO05D001428 3.9e-07 59.7 93 38.7
Haze_03275 Corylus avellana HOM05D001204 ORTHO05D001428 3.9e-07 59.7 92 39.1
Thhalv10001634m.g Eutrema salsugineum HOM05D001204 ORTHO05D001428 3.9e-07 59.7 100 35.0
Lsat_1_v5_gn_2_101621 Lactuca sativa HOM05D001204 ORTHO05D001428 3.9e-07 59.7 78 39.7
MD11G1011100 Malus domestica HOM05D001204 ORTHO05D001428 3.9e-07 59.7 117 33.3
Nn2g15782 Nelumbo nucifera HOM05D001204 ORTHO05D001428 3.9e-07 59.7 78 38.5
Nitab4.5_0001059g0030 Nicotiana tabacum HOM05D001204 ORTHO05D001428 3.9e-07 59.7 79 38.0
CBR_g23873 Chara braunii HOM05D013996 ORTHO05D016529 5.1e-07 59.3 51 56.9
CBR_g49581 Chara braunii HOM05D013996 ORTHO05D016529 5.1e-07 59.3 42 64.3
Gohir.D05G001000 Gossypium hirsutum HOM05D001204 ORTHO05D001428 5.1e-07 59.3 81 38.3
Gohir.D06G111700 Gossypium hirsutum HOM05D001204 ORTHO05D001428 5.1e-07 59.3 143 31.5
Gorai.009G000900 Gossypium raimondii HOM05D001204 ORTHO05D001428 5.1e-07 59.3 81 38.3
Nitab4.5_0001599g0040 Nicotiana tabacum HOM05D001204 ORTHO05D009253 6.6e-07 58.9 84 38.1
Potri.001G008500 Populus trichocarpa HOM05D001204 ORTHO05D001428 6.6e-07 58.9 117 34.2
Sabra01G0006600 Salix brachista HOM05D001204 ORTHO05D001428 6.6e-07 58.9 84 39.3
PGSC0003DMG400032182 Solanum tuberosum HOM05D001204 ORTHO05D001428 6.6e-07 58.9 94 39.4
Cc04_g07220 Coffea canephora HOM05D001204 ORTHO05D009253 8.7e-07 58.5 77 41.6
Gohir.A05G000700 Gossypium hirsutum HOM05D001204 ORTHO05D001428 8.7e-07 58.5 81 38.3
Gohir.A06G102700 Gossypium hirsutum HOM05D001204 ORTHO05D001428 8.7e-07 58.5 80 41.2
Psat4g142560 Pisum sativum HOM05D001204 ORTHO05D001428 8.7e-07 58.5 104 35.6
SMO166G0001 Selaginella moellendorffii HOM05D001204 ORTHO05D001428 8.7e-07 58.5 72 34.7
TAR633G0401 Trochodendron aralioides HOM05D001204 ORTHO05D001428 8.7e-07 58.5 107 35.5
TAR633G1632 Trochodendron aralioides HOM05D001204 ORTHO05D001428 8.7e-07 58.5 107 35.5
Carub.0004s2689 Capsella rubella HOM05D001204 ORTHO05D001428 1.1e-06 58.2 71 38.0
CiPaw.14G134000 Carya illinoinensis HOM05D001204 ORTHO05D001428 1.1e-06 58.2 77 41.6
Ca_26079_v3 Cicer arietinum L. HOM05D001204 ORTHO05D001428 1.1e-06 58.2 85 38.8
FAN16G0104 Fragaria x ananassa HOM05D001204 ORTHO05D001428 1.1e-06 58.2 85 40.0
FAN25G0871 Fragaria x ananassa HOM05D001204 ORTHO05D001428 1.1e-06 58.2 85 40.0
Gohir.D08G089200 Gossypium hirsutum HOM05D001204 ORTHO05D001428 1.1e-06 58.2 80 38.8
Hma1.2p1_0963F.1_g241950 Hydrangea macrophylla HOM05D001204 ORTHO05D009253 1.1e-06 58.2 84 39.3
Hma1.2p1_2088F.1_g313820 Hydrangea macrophylla HOM05D001204 ORTHO05D009253 1.1e-06 58.2 84 39.3
Potri.006G195700 Populus trichocarpa HOM05D001204 ORTHO05D001428 1.1e-06 58.2 84 40.5
SEGI_17852 Sequoiadendron giganteum HOM05D001204 ORTHO05D001428 1.1e-06 58.2 84 38.1
SEGI_33817 Sequoiadendron giganteum HOM05D013996 ORTHO05D016529 1.1e-06 58.2 42 61.9
THA.LOC104815658 Tarenaya hassleriana HOM05D001204 ORTHO05D001428 1.1e-06 58.2 71 42.3
Thecc.09G212300 Theobroma cacao HOM05D001204 ORTHO05D001428 1.1e-06 58.2 104 35.6
Aa31LG1G25910 Aethionema arabicum HOM05D001204 ORTHO05D001428 1.5e-06 57.8 71 38.0
ClCG09G003660 Citrullus lanatus HOM05D001204 ORTHO05D001428 1.5e-06 57.8 72 41.7
MELO3C014672.2 Cucumis melo HOM05D001204 ORTHO05D001428 1.5e-06 57.8 71 43.7
ECA236G5040 Erigeron canadensis HOM05D001204 ORTHO05D001428 1.5e-06 57.8 84 39.3
Thhalv10001638m.g Eutrema salsugineum HOM05D001204 ORTHO05D001428 1.5e-06 57.8 100 33.0
HanXRQChr04g0117421 Helianthus annuus HOM05D001204 ORTHO05D001428 1.5e-06 57.8 99 36.4
Lalb_Chr07g0186701 Lupinus albus HOM05D001204 ORTHO05D001428 1.5e-06 57.8 83 39.8
Medtr3g083760 Medicago truncatula HOM05D001204 ORTHO05D001428 1.5e-06 57.8 78 37.2
Thecc.05G177900 Theobroma cacao HOM05D001204 ORTHO05D001428 1.5e-06 57.8 78 35.9
TWI60G1209 Tripterygium wilfordii HOM05D001204 ORTHO05D001428 1.5e-06 57.8 71 42.3
AT2G44290 Arabidopsis thaliana HOM05D001204 ORTHO05D001428 1.9e-06 57.4 97 35.1
AT2G44300 Arabidopsis thaliana HOM05D001204 ORTHO05D001428 1.9e-06 57.4 91 33.0
BcaC03g13249 Brassica carinata HOM05D000489 ORTHO05D000372 1.9e-06 57.4 94 38.3
BolC2t06342H Brassica oleracea HOM05D000489 ORTHO05D000372 1.9e-06 57.4 115 37.4
Eucgr.B03624 Eucalyptus grandis HOM05D001204 ORTHO05D001428 1.9e-06 57.4 200 28.5
Glyma.05G154600 Glycine max HOM05D001204 ORTHO05D001428 1.9e-06 57.4 83 39.8
HanXRQChr07g0196741 Helianthus annuus HOM05D001204 ORTHO05D001428 1.9e-06 57.4 78 38.5
Lju124C23T8 Lonicera japonica HOM05D001204 ORTHO05D001428 1.9e-06 57.4 119 35.3
Peaxi162Scf00015g00837 Petunia axillaris HOM05D001204 ORTHO05D009253 1.9e-06 57.4 123 32.5
BraA02t04976Z Brassica rapa HOM05D000489 ORTHO05D000372 2.5e-06 57.0 96 38.5
Duzib150G0062 Durio zibethinus HOM05D001204 ORTHO05D001428 2.5e-06 57.0 104 34.6
Duzib168G0453 Durio zibethinus HOM05D001204 ORTHO05D001428 2.5e-06 57.0 109 33.0
Pp3c22_17850 Physcomitrium patens HOM05D013996 ORTHO05D016529 2.5e-06 57.0 42 57.1
Psat7g073960 Pisum sativum HOM05D001204 ORTHO05D001428 2.5e-06 57.0 70 44.3
Zm00001eb005130 Zea mays HOM05D001204 ORTHO05D001428 2.5e-06 57.0 129 32.6
Atru.chr3.2271 Acer truncatum HOM05D001204 ORTHO05D001428 3.3e-06 56.6 112 34.8
CAN.G158.7 Capsicum annuum HOM05D001204 ORTHO05D001428 3.3e-06 56.6 71 40.8
CARHR139470 Cardamine hirsuta HOM05D001204 ORTHO05D001428 3.3e-06 56.6 91 33.0
Migut.B00627 Erythranthe guttata HOM05D000489 ORTHO05D000372 3.3e-06 56.6 98 35.7
Gorai.004G094000 Gossypium raimondii HOM05D001204 ORTHO05D001428 3.3e-06 56.6 109 33.9
Lj9A320T31 Lonicera japonica HOM05D000489 ORTHO05D000372 3.3e-06 56.6 88 36.4
Lju1163C0T14 Lonicera japonica HOM05D000489 ORTHO05D000372 3.3e-06 56.6 88 36.4
MBI04_g09737_MAGBIO Magnolia biondii HOM05D001204 ORTHO05D001428 3.3e-06 56.6 106 34.9
Os03g0167000 Oryza sativa ssp. japonica HOM05D001204 ORTHO05D001428 3.3e-06 56.6 109 37.6
Phvul.001G268300 Phaseolus vulgaris HOM05D001204 ORTHO05D001428 3.3e-06 56.6 83 38.6
SMO146G0132 Selaginella moellendorffii HOM05D000489 ORTHO05D000372 3.3e-06 56.6 71 42.3
SGA_v2.0_scaffold95G28767 Striga asiatica HOM05D001204 ORTHO05D001428 3.3e-06 56.6 83 34.9
TAR369G0318 Trochodendron aralioides HOM05D001204 ORTHO05D001428 3.3e-06 56.6 78 37.2
C02p03810 Brassica napus HOM05D000489 ORTHO05D000372 4.3e-06 56.2 94 37.2
ClCG02G023920 Citrullus lanatus HOM05D001204 ORTHO05D001428 4.3e-06 56.2 128 33.6
Cc01_g02420 Coffea canephora HOM05D001204 ORTHO05D001428 4.3e-06 56.2 104 36.5
CsaV3_4G023430 Cucumis sativus L. HOM05D001204 ORTHO05D001428 4.3e-06 56.2 71 42.3
Glyma.11G256100 Glycine max HOM05D001204 ORTHO05D001428 4.3e-06 56.2 71 40.8
Medtr8g085560 Medicago truncatula HOM05D001204 ORTHO05D001428 4.3e-06 56.2 92 37.0
QL01p008012 Quercus lobata HOM05D001204 ORTHO05D001428 4.3e-06 56.2 78 38.5
Solyc01g005985.1 Solanum lycopersicum HOM05D001204 ORTHO05D001428 4.3e-06 56.2 86 39.5
Sopen01g002000 Solanum pennellii HOM05D001204 ORTHO05D001428 4.3e-06 56.2 86 39.5
Ciclev10016842m.g Citrus clementina HOM05D001204 ORTHO05D001428 5.6e-06 55.8 106 34.9
ECA233G1648 Erigeron canadensis HOM05D001204 ORTHO05D001428 5.6e-06 55.8 117 32.5
FvH4_7g00060 Fragaria vesca HOM05D001204 ORTHO05D001428 5.6e-06 55.8 83 37.3
FAN01G0173 Fragaria x ananassa HOM05D001204 ORTHO05D001428 5.6e-06 55.8 83 37.3
FAN06G2784 Fragaria x ananassa HOM05D001204 ORTHO05D001428 5.6e-06 55.8 83 37.3
FAN14G5429 Fragaria x ananassa HOM05D001204 ORTHO05D001428 5.6e-06 55.8 83 37.3
Gohir.A08G011600 Gossypium hirsutum HOM05D001204 ORTHO05D001428 5.6e-06 55.8 106 34.9
MBI01_g44283_MAGBIO Magnolia biondii HOM05D001204 ORTHO05D001428 5.6e-06 55.8 105 35.2
Manes.15G105800 Manihot esculenta HOM05D001204 ORTHO05D001428 5.6e-06 55.8 84 39.3
Mapoly0030s0151 Marchantia polymorpha HOM05D000489 ORTHO05D000372 5.6e-06 55.8 79 38.0
Thecc.01G416800 Theobroma cacao HOM05D001204 ORTHO05D001428 5.6e-06 55.8 94 38.3
Atru.chr9.820 Acer truncatum HOM05D001204 ORTHO05D009253 7.3e-06 55.5 79 39.2
AL4G43260 Arabidopsis lyrata HOM05D001204 ORTHO05D001428 7.3e-06 55.5 96 31.2
Ca_16389_v3 Cicer arietinum L. HOM05D001204 ORTHO05D001428 7.3e-06 55.5 80 35.0
ECA238G0462 Erigeron canadensis HOM05D001204 ORTHO05D001428 7.3e-06 55.5 115 33.9
Thhalv10011802m.g Eutrema salsugineum HOM05D001204 ORTHO05D001428 7.3e-06 55.5 112 34.8
Glyma.08G112300 Glycine max HOM05D001204 ORTHO05D001428 7.3e-06 55.5 83 38.6
Nn7g35928 Nelumbo nucifera HOM05D001204 ORTHO05D001428 7.3e-06 55.5 90 35.6
Nitab4.5_0000582g0250 Nicotiana tabacum HOM05D001204 ORTHO05D001428 7.3e-06 55.5 83 38.6
Pp3c11_11470 Physcomitrium patens HOM05D000489 ORTHO05D000372 7.3e-06 55.5 100 32.0
PGR102G2431 Punica granatum HOM05D001204 ORTHO05D001428 7.3e-06 55.5 104 38.5
SalBow5G2557 Salvia bowleyana HOM05D001204 ORTHO05D001428 7.3e-06 55.5 71 40.8
Cpa.g.sc23.158 Carica papaya HOM05D001204 ORTHO05D001428 9.6e-06 55.1 83 37.3
CiPaw.13G174200 Carya illinoinensis HOM05D001204 ORTHO05D001428 9.6e-06 55.1 108 35.2
Gohir.A08G079600 Gossypium hirsutum HOM05D001204 ORTHO05D001428 9.6e-06 55.1 109 33.0
Gohir.D08G022100 Gossypium hirsutum HOM05D001204 ORTHO05D001428 9.6e-06 55.1 107 34.6


User provided reference genes

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