Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0114 Selaginella moellendorffii HOM05D005618 ORTHO05D007278 2.0e-112 409.1 205 100.0
BcaC05g27023 Brassica carinata HOM05D005618 ORTHO05D007278 1.6e-53 213.4 215 50.7
C05p28860 Brassica napus HOM05D005618 ORTHO05D007278 1.6e-53 213.4 215 50.7
BolC5t31605H Brassica oleracea HOM05D005618 ORTHO05D007278 1.6e-53 213.4 215 50.7
BcaB07g32606 Brassica carinata HOM05D005618 ORTHO05D007278 3.7e-53 212.2 215 49.8
Migut.M00907 Erythranthe guttata HOM05D005618 ORTHO05D007278 4.8e-53 211.8 207 54.1
Gohir.A10G041000 Gossypium hirsutum HOM05D005618 ORTHO05D007278 6.3e-53 211.5 211 51.7
Phvul.002G096900 Phaseolus vulgaris HOM05D005618 ORTHO05D007278 6.3e-53 211.5 207 52.7
Sabra11G0067000 Salix brachista HOM05D005618 ORTHO05D007278 1.8e-52 209.9 211 51.2
Sabra11G0068900 Salix brachista HOM05D005618 ORTHO05D007278 1.8e-52 209.9 211 51.2
Hund21546 Selenicereus undatus HOM05D005618 ORTHO05D007278 1.8e-52 209.9 206 52.4
A09p36460 Brassica napus HOM05D005618 ORTHO05D007278 4.1e-52 208.8 215 49.8
BraA09t39168Z Brassica rapa HOM05D005618 ORTHO05D007278 4.1e-52 208.8 215 49.8
VMungo0251G3758 Vigna mungo HOM05D005618 ORTHO05D007278 6.9e-52 208.0 207 51.7
HanXRQChr15g0480861 Helianthus annuus HOM05D005618 ORTHO05D007278 9.1e-52 207.6 209 52.2
PGR083G1302 Punica granatum HOM05D005618 ORTHO05D007278 9.1e-52 207.6 201 53.2
Lsat_1_v5_gn_7_28281 Lactuca sativa HOM05D005618 ORTHO05D007278 1.2e-51 207.2 211 52.1
Psat7g130040 Pisum sativum HOM05D005618 ORTHO05D007278 1.2e-51 207.2 209 49.3
Sc17g0004900 Simmondsia chinensis HOM05D005618 ORTHO05D007278 1.2e-51 207.2 209 53.1
MSTRG.7487 Avicennia marina HOM05D005618 ORTHO05D007278 1.5e-51 206.8 211 52.1
Thecc.06G150300 Theobroma cacao HOM05D005618 ORTHO05D007278 1.5e-51 206.8 213 49.8
AagrBONN_evm.TU.Sc2ySwM_344.1819 Anthoceros agrestis HOM05D005618 ORTHO05D007278 2.6e-51 206.1 243 46.9
Lalb_Chr05g0219641 Lupinus albus HOM05D005618 ORTHO05D007278 2.6e-51 206.1 208 51.0
Nn4g26571 Nelumbo nucifera HOM05D005618 ORTHO05D007278 3.4e-51 205.7 204 51.5
Glyma.20G018500 Glycine max HOM05D005618 ORTHO05D007278 4.5e-51 205.3 203 52.7
Potri.011G085100 Populus trichocarpa HOM05D005618 ORTHO05D007278 4.5e-51 205.3 211 50.7
Sp1g25930 Schrenkiella parvula HOM05D005618 ORTHO05D007278 4.5e-51 205.3 217 49.3
TPR.G38285 Trifolium pratense HOM05D005618 ORTHO05D007278 4.5e-51 205.3 207 49.8
Thhalv10008455m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.9e-51 204.9 211 49.8
Ca_18751_v3 Cicer arietinum L. HOM05D005618 ORTHO05D007278 1.0e-50 204.1 209 49.3
Gohir.D10G041800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 1.0e-50 204.1 212 50.0
ATR0730G012 Amborella trichopoda HOM05D005618 ORTHO05D007278 2.2e-50 203.0 205 49.3
Gorai.011G044400 Gossypium raimondii HOM05D005618 ORTHO05D007278 2.2e-50 203.0 214 50.0
Mapoly0148s0015 Marchantia polymorpha HOM05D005618 ORTHO05D007278 2.9e-50 202.6 242 46.7
COL.COLO4_31069 Corchorus olitorius HOM05D005618 ORTHO05D007278 3.8e-50 202.2 207 49.3
Duzib235G0110 Durio zibethinus HOM05D005618 ORTHO05D007278 3.8e-50 202.2 218 47.7
DCAR_003916 Daucus carota HOM05D005618 ORTHO05D007278 5.0e-50 201.8 207 49.8
QL05p057939 Quercus lobata HOM05D005618 ORTHO05D007278 5.0e-50 201.8 207 50.2
Lalb_Chr09g0328651 Lupinus albus HOM05D005618 ORTHO05D007278 8.5e-50 201.1 210 51.0
AL1G43960 Arabidopsis lyrata HOM05D005618 ORTHO05D007278 1.1e-49 200.7 213 47.4
MSTRG.16244 Avicennia marina HOM05D005618 ORTHO05D007278 1.1e-49 200.7 212 50.5
Duzib192G0044 Durio zibethinus HOM05D005618 ORTHO05D007278 1.4e-49 200.3 213 48.8
ECA236G2996 Erigeron canadensis HOM05D005618 ORTHO05D007278 1.4e-49 200.3 217 49.8
AT1G30070 Arabidopsis thaliana HOM05D005618 ORTHO05D007278 1.9e-49 199.9 217 47.5
Oeu034148.1 Olea europaea HOM05D005618 ORTHO05D007278 1.9e-49 199.9 209 50.2
SGA_v2.0_scaffold333G48991 Striga asiatica HOM05D005618 ORTHO05D007278 1.9e-49 199.9 206 51.9
TWI53G0952 Tripterygium wilfordii HOM05D005618 ORTHO05D007278 2.5e-49 199.5 209 50.2
SGA_v2.0_scaffold1G00178 Striga asiatica HOM05D005618 ORTHO05D007278 3.2e-49 199.1 201 51.2
Aa31LG6G5600 Aethionema arabicum HOM05D005618 ORTHO05D007278 4.2e-49 198.7 224 47.3
SEGI_02039 Sequoiadendron giganteum HOM05D005618 ORTHO05D007278 4.2e-49 198.7 210 49.5
Glyma.07G220200 Glycine max HOM05D005618 ORTHO05D007278 5.5e-49 198.4 210 49.5
Dinv32254 Davidia involucrata HOM05D005618 ORTHO05D007278 7.2e-49 198.0 208 50.5
Nitab4.5_0006887g0020 Nicotiana tabacum HOM05D005618 ORTHO05D007278 7.2e-49 198.0 207 51.2
TAR624G0623 Trochodendron aralioides HOM05D005618 ORTHO05D007278 7.2e-49 198.0 201 47.3
arahy.Tifrunner.gnm1.ann1.LME4NB Arachis hypogaea HOM05D005618 ORTHO05D007278 9.4e-49 197.6 207 49.8
FAN21G3768 Fragaria x ananassa HOM05D005618 ORTHO05D007278 9.4e-49 197.6 205 50.2
THA.LOC104814300 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 1.2e-48 197.2 208 49.0
Carub.0001s2829 Capsella rubella HOM05D005618 ORTHO05D007278 1.6e-48 196.8 208 47.6
Cfa000939 Carpinus fangiana HOM05D005618 ORTHO05D007278 1.6e-48 196.8 237 43.9
CiPaw.09G123100 Carya illinoinensis HOM05D005618 ORTHO05D007278 1.6e-48 196.8 209 49.3
arahy.Tifrunner.gnm1.ann1.R3FQ90 Arachis hypogaea HOM05D005618 ORTHO05D007278 2.1e-48 196.4 207 49.8
CARHR029340 Cardamine hirsuta HOM05D005618 ORTHO05D007278 2.1e-48 196.4 213 46.0
CiPaw.10G091700 Carya illinoinensis HOM05D005618 ORTHO05D007278 2.1e-48 196.4 207 48.3
Ciclev10016692m.g Citrus clementina HOM05D005618 ORTHO05D007278 2.1e-48 196.4 201 50.7
Haze_05608 Corylus avellana HOM05D005618 ORTHO05D007278 2.1e-48 196.4 208 49.5
Manes.17G070300 Manihot esculenta HOM05D005618 ORTHO05D007278 2.7e-48 196.1 207 48.8
TAR626G0061 Trochodendron aralioides HOM05D005618 ORTHO05D007278 2.7e-48 196.1 205 46.8
FAN25G1374 Fragaria x ananassa HOM05D005618 ORTHO05D007278 3.6e-48 195.7 207 49.3
Pp3c4_13920 Physcomitrium patens HOM05D005618 ORTHO05D007278 3.6e-48 195.7 221 46.6
CDE02G0590 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 6.1e-48 194.9 207 50.2
AUR62030187 Chenopodium quinoa HOM05D005618 ORTHO05D007278 6.1e-48 194.9 209 49.3
Sopen08g007080 Solanum pennellii HOM05D005618 ORTHO05D007278 6.1e-48 194.9 206 50.5
Cc00_g08440 Coffea canephora HOM05D005618 ORTHO05D007278 7.9e-48 194.5 207 47.3
FAN11G3487 Fragaria x ananassa HOM05D005618 ORTHO05D007278 7.9e-48 194.5 205 49.3
RcHm_v2.0_Chr5g0014231 Rosa chinensis HOM05D005618 ORTHO05D007278 7.9e-48 194.5 209 47.8
CANSAT35G0334 Cannabis sativa HOM05D005618 ORTHO05D007278 1.0e-47 194.1 205 48.3
FvH4_3g05510 Fragaria vesca HOM05D005618 ORTHO05D007278 1.0e-47 194.1 205 48.8
FAN16G1298 Fragaria x ananassa HOM05D005618 ORTHO05D007278 1.0e-47 194.1 205 49.3
Gorai.009G154900 Gossypium raimondii HOM05D005618 ORTHO05D007278 1.0e-47 194.1 214 48.1
CAN.G50.16 Capsicum annuum HOM05D005618 ORTHO05D007278 1.4e-47 193.7 205 50.7
Eucgr.D00295 Eucalyptus grandis HOM05D005618 ORTHO05D007278 1.4e-47 193.7 208 50.5
Oeu052366.1 Olea europaea HOM05D005618 ORTHO05D007278 1.4e-47 193.7 222 48.2
Solyc08g016670.3 Solanum lycopersicum HOM05D005618 ORTHO05D007278 1.8e-47 193.4 206 49.5
HPP92_020290 Vanilla planifolia HOM05D005618 ORTHO05D007278 2.3e-47 193.0 198 49.5
Gohir.A05G148300 Gossypium hirsutum HOM05D005618 ORTHO05D007278 3.0e-47 192.6 214 48.1
MD05G1283600 Malus domestica HOM05D005618 ORTHO05D007278 3.0e-47 192.6 210 49.5
SalBow8G3565 Salvia bowleyana HOM05D005618 ORTHO05D007278 3.0e-47 192.6 212 49.5
Manes.15G121800 Manihot esculenta HOM05D005618 ORTHO05D007278 5.1e-47 191.8 209 49.3
Sed0020286 Sechium edule HOM05D005618 ORTHO05D007278 6.7e-47 191.4 210 47.1
Gohir.D05G150800 Gossypium hirsutum HOM05D005618 ORTHO05D007278 8.8e-47 191.0 217 47.5
Lj4g0005080 Lotus japonicus HOM05D005618 ORTHO05D007278 8.8e-47 191.0 208 48.6
THA.LOC104820649 Tarenaya hassleriana HOM05D005618 ORTHO05D007278 8.8e-47 191.0 207 48.3
CDE06G1306 Ceratophyllum demersum HOM05D005618 ORTHO05D007278 1.5e-46 190.3 207 47.8
AUR62002738 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.5e-46 190.3 209 48.3
PGSC0003DMG400012093 Solanum tuberosum HOM05D005618 ORTHO05D007278 1.5e-46 190.3 206 49.5
Aqoxy1G01706 Aquilegia oxysepala HOM05D005618 ORTHO05D007278 2.0e-46 189.9 220 45.5
MELO3C002736.2 Cucumis melo HOM05D005618 ORTHO05D007278 2.0e-46 189.9 210 48.1
Lj2A305G54 Lonicera japonica HOM05D005618 ORTHO05D007278 2.0e-46 189.9 208 47.1
GSVIVG01021471001 Vitis vinifera HOM05D005618 ORTHO05D007278 2.6e-46 189.5 209 45.9
Hma1.2p1_0053F.1_g030930 Hydrangea macrophylla HOM05D005618 ORTHO05D007278 4.4e-46 188.7 208 47.1
ClCG03G006840 Citrullus lanatus HOM05D005618 ORTHO05D007278 1.7e-45 186.8 208 49.0
Os01g0757500 Oryza sativa ssp. japonica HOM05D005618 ORTHO05D007278 2.2e-45 186.4 217 46.5
CsaV3_1G032420 Cucumis sativus L. HOM05D005618 ORTHO05D007278 6.3e-45 184.9 208 47.1
MD10G1261800 Malus domestica HOM05D005618 ORTHO05D007278 1.1e-44 184.1 211 49.3
PSO675G5881 Papaver somniferum HOM05D005618 ORTHO05D007278 1.1e-44 184.1 233 43.8
Zm00001eb370650 Zea mays HOM05D005618 ORTHO05D007278 1.4e-44 183.7 198 46.5
vmacro10962 Vaccinium macrocarpon HOM05D005618 ORTHO05D007278 5.3e-44 181.8 249 41.4
MBI10_g30420_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.6e-43 179.5 173 48.6
Ah.09g232560 Amaranthus hybridus HOM05D005618 ORTHO05D007278 3.4e-43 179.1 241 42.7
Zm00001eb152680 Zea mays HOM05D005618 ORTHO05D007278 3.4e-43 179.1 195 46.2
Peaxi162Scf01211g00117 Petunia axillaris HOM05D005618 ORTHO05D007278 3.8e-42 175.6 250 41.2
CSS0012983 Camellia sinensis var. sinensis HOM05D005618 ORTHO05D007278 5.0e-42 175.3 144 55.6
Nn3g20783 Nelumbo nucifera HOM05D005618 ORTHO05D007278 2.5e-41 172.9 161 52.8
Actinidia39574 Actinidia chinensis HOM05D005618 ORTHO05D007278 3.2e-41 172.6 147 53.1
Nitab4.5_0000420g0030 Nicotiana tabacum HOM05D005618 ORTHO05D007278 5.5e-41 171.8 200 46.5
Atru.chr10.1223 Acer truncatum HOM05D005618 ORTHO05D007278 1.6e-40 170.2 164 48.2
Medtr4g084250 Medicago truncatula HOM05D005618 ORTHO05D007278 2.1e-40 169.9 211 44.5
CBR_g22260 Chara braunii HOM05D005618 ORTHO05D007278 3.7e-37 159.1 251 38.2
AUR62026670 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.4e-36 157.1 184 46.7
Rhsim02G0158200 Rhododendron simsii HOM05D005618 ORTHO05D007278 4.1e-36 155.6 191 44.0
Thhalv10002717m.g Eutrema salsugineum HOM05D005618 ORTHO05D007278 5.3e-36 155.2 123 56.9
unitig_32.g11444 Utricularia gibba HOM05D005618 ORTHO05D007278 1.2e-30 137.5 103 60.2
Cpa.g.c46789 Carica papaya HOM05D005618 ORTHO05D007278 1.5e-30 137.1 111 56.8
SMO364G0864 Selaginella moellendorffii HOM05D005618 ORTHO05D374196 3.3e-30 136.0 198 46.0
Prupe.4G081000 Prunus persica HOM05D005618 ORTHO05D007278 4.1e-28 129.0 232 34.5
AUR62040575 Chenopodium quinoa HOM05D005618 ORTHO05D007278 1.2e-27 127.5 170 40.6
Actinidia07695 Actinidia chinensis HOM05D005618 ORTHO05D007278 1.0e-26 124.4 213 38.0
SHI24907 Sapria himalayana HOM05D005618 ORTHO05D007278 2.8e-21 106.3 170 37.1
MBI16_g34289_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 1.8e-20 103.6 100 49.0
SMO353G0169 Selaginella moellendorffii HOM05D005618 ORTHO05D001361 1.2e-19 100.9 48 97.9
PSO541G3455 Papaver somniferum HOM05D005618 ORTHO05D007278 1.0e-10 71.2 234 27.4
MBI18_g05573_MAGBIO Magnolia biondii HOM05D005618 ORTHO05D007278 2.3e-07 60.1 32 81.2


User provided reference genes

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