Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO364G0112 Selaginella moellendorffii HOM05D004962 ORTHO05D006249 0.0e+00 1642.9 815 100.0
CiPaw.05G242900 Carya illinoinensis HOM05D004962 ORTHO05D006249 4.6e-248 861.7 856 52.7
CANSAT01G1665 Cannabis sativa HOM05D004962 ORTHO05D006249 1.8e-244 849.7 849 52.3
MD13G1035000 Malus domestica HOM05D004962 ORTHO05D006249 5.3e-244 848.2 854 51.5
QL01p010772 Quercus lobata HOM05D004962 ORTHO05D006249 5.3e-244 848.2 859 52.0
FAN22G2325 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.0e-244 847.4 855 52.2
Dinv16141 Davidia involucrata HOM05D004962 ORTHO05D006249 2.0e-243 846.3 853 52.5
FvH4_4g26660 Fragaria vesca HOM05D004962 ORTHO05D006249 3.4e-243 845.5 855 52.0
FAN17G1054 Fragaria x ananassa HOM05D004962 ORTHO05D006249 4.4e-243 845.1 856 52.1
SalBow8G2488 Salvia bowleyana HOM05D004962 ORTHO05D006249 7.6e-243 844.3 856 51.9
FAN07G0368 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.9e-243 844.0 856 52.0
FAN12G3194 Fragaria x ananassa HOM05D004962 ORTHO05D006249 9.9e-243 844.0 855 51.9
FAN12G0536 Fragaria x ananassa HOM05D004962 ORTHO05D006249 2.2e-242 842.8 855 51.9
Glyma.20G121000 Glycine max HOM05D004962 ORTHO05D006249 2.2e-242 842.8 854 51.4
Manes.14G107300 Manihot esculenta HOM05D004962 ORTHO05D006249 3.8e-242 842.0 854 51.1
Phvul.007G032400 Phaseolus vulgaris HOM05D004962 ORTHO05D006249 4.9e-242 841.6 853 50.9
MD16G1036900 Malus domestica HOM05D004962 ORTHO05D006249 6.4e-242 841.3 854 51.5
Psat6g224120 Pisum sativum HOM05D004962 ORTHO05D006249 8.4e-242 840.9 851 52.4
RcHm_v2.0_Chr4g0434371 Rosa chinensis HOM05D004962 ORTHO05D006249 1.4e-241 840.1 854 52.2
Lj3A879T38 Lonicera japonica HOM05D004962 ORTHO05D006249 1.9e-241 839.7 851 52.1
Lj5g0019473 Lotus japonicus HOM05D004962 ORTHO05D006249 2.4e-241 839.3 855 51.0
arahy.Tifrunner.gnm1.ann1.I79V4W Arachis hypogaea HOM05D004962 ORTHO05D006249 4.2e-241 838.6 854 51.2
arahy.Tifrunner.gnm1.ann1.HFR8A2 Arachis hypogaea HOM05D004962 ORTHO05D006249 5.4e-241 838.2 853 50.8
Prupe.1G317200 Prunus persica HOM05D004962 ORTHO05D006249 5.4e-241 838.2 857 51.5
Sabra10G0090000 Salix brachista HOM05D004962 ORTHO05D006249 1.2e-240 837.0 850 51.8
Hund20741 Selenicereus undatus HOM05D004962 ORTHO05D006249 2.7e-240 835.9 848 51.5
SGA_v2.0_scaffold170G38808 Striga asiatica HOM05D004962 ORTHO05D006249 3.5e-240 835.5 863 51.7
Lalb_Chr06g0165831 Lupinus albus HOM05D004962 ORTHO05D006249 4.6e-240 835.1 853 51.0
Nitab4.5_0002112g0120 Nicotiana tabacum HOM05D004962 ORTHO05D006249 6.0e-240 834.7 852 52.1
VMungo0720G3109 Vigna mungo HOM05D004962 ORTHO05D006249 1.3e-239 833.6 857 50.9
Sed0022508 Sechium edule HOM05D004962 ORTHO05D006249 2.3e-239 832.8 851 50.5
Thecc.02G221200 Theobroma cacao HOM05D004962 ORTHO05D006249 2.3e-239 832.8 859 51.6
AUR62014113 Chenopodium quinoa HOM05D004962 ORTHO05D006249 3.9e-239 832.0 850 51.3
Glyma.10G270300 Glycine max HOM05D004962 ORTHO05D006249 5.1e-239 831.6 855 50.8
Potri.010G119600 Populus trichocarpa HOM05D004962 ORTHO05D006249 3.3e-238 828.9 850 51.4
Rhsim09G0103500 Rhododendron simsii HOM05D004962 ORTHO05D006249 3.3e-238 828.9 854 50.8
MSTRG.2215 Avicennia marina HOM05D004962 ORTHO05D006249 4.3e-238 828.6 854 51.5
Ca_06893_v3 Cicer arietinum L. HOM05D004962 ORTHO05D006249 4.3e-238 828.6 854 51.6
Medtr1g109490 Medicago truncatula HOM05D004962 ORTHO05D006249 4.3e-238 828.6 856 51.1
PGR119G1728 Punica granatum HOM05D004962 ORTHO05D006249 4.3e-238 828.6 860 50.7
GSVIVG01011835001 Vitis vinifera HOM05D004962 ORTHO05D006249 4.3e-238 828.6 843 52.1
DCAR_007266 Daucus carota HOM05D004962 ORTHO05D006249 5.6e-238 828.2 845 51.8
HanXRQChr08g0213241 Helianthus annuus HOM05D004962 ORTHO05D006249 5.6e-238 828.2 852 50.8
Solyc06g008310.3 Solanum lycopersicum HOM05D004962 ORTHO05D006249 5.6e-238 828.2 851 52.1
Sopen06g003160 Solanum pennellii HOM05D004962 ORTHO05D006249 7.3e-238 827.8 852 52.1
CSS0022436 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.3e-237 827.0 847 51.9
Nitab4.5_0000694g0070 Nicotiana tabacum HOM05D004962 ORTHO05D006249 1.3e-237 827.0 853 51.5
PGSC0003DMG400025502 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.6e-237 826.6 851 51.7
ECA233G5272 Erigeron canadensis HOM05D004962 ORTHO05D006249 3.6e-237 825.5 849 51.1
Duzib248G1599 Durio zibethinus HOM05D004962 ORTHO05D006249 8.1e-237 824.3 858 51.2
Gohir.D10G184801 Gossypium hirsutum HOM05D004962 ORTHO05D006249 8.1e-237 824.3 855 51.1
Lsat_1_v5_gn_8_42541 Lactuca sativa HOM05D004962 ORTHO05D006249 8.1e-237 824.3 835 51.3
AUR62002806 Chenopodium quinoa HOM05D004962 ORTHO05D006249 1.1e-236 823.9 853 51.0
Migut.E00376 Erythranthe guttata HOM05D004962 ORTHO05D006249 1.1e-236 823.9 846 50.7
ATR0759G035 Amborella trichopoda HOM05D004962 ORTHO05D006249 1.4e-236 823.5 841 52.8
Gorai.011G207200 Gossypium raimondii HOM05D004962 ORTHO05D006249 5.3e-236 821.6 855 51.0
Peaxi162Scf00179g00544 Petunia axillaris HOM05D004962 ORTHO05D006249 1.2e-235 820.5 850 51.4
MELO3C012277.2 Cucumis melo HOM05D004962 ORTHO05D006249 1.5e-235 820.1 856 50.1
Aqoxy3G04030 Aquilegia oxysepala HOM05D004962 ORTHO05D006249 2.0e-235 819.7 858 50.2
TWI31G0370 Tripterygium wilfordii HOM05D004962 ORTHO05D006249 2.0e-235 819.7 852 50.7
CsaV3_5G034620 Cucumis sativus L. HOM05D004962 ORTHO05D006249 2.6e-235 819.3 856 50.0
Mapoly0064s0032 Marchantia polymorpha HOM05D004962 ORTHO05D006249 7.6e-235 817.8 906 48.9
Ciclev10014261m.g Citrus clementina HOM05D004962 ORTHO05D006249 1.3e-234 817.0 859 51.5
Cc11_g09620 Coffea canephora HOM05D004962 ORTHO05D006249 2.9e-234 815.8 854 51.2
Eucgr.G02236 Eucalyptus grandis HOM05D004962 ORTHO05D006249 3.8e-234 815.5 857 49.7
Pp3c16_8750 Physcomitrium patens HOM05D004962 ORTHO05D005286 4.9e-234 815.1 865 49.7
Atru.chr11.243 Acer truncatum HOM05D004962 ORTHO05D006249 6.4e-234 814.7 855 50.5
Nn4g23964 Nelumbo nucifera HOM05D004962 ORTHO05D006249 6.4e-234 814.7 856 50.4
MBI09_g25150_MAGBIO Magnolia biondii HOM05D004962 ORTHO05D006249 1.4e-233 813.5 848 50.4
Zm00001eb033820 Zea mays HOM05D004962 ORTHO05D006249 2.1e-232 809.7 847 49.9
ClCG05G022460 Citrullus lanatus HOM05D004962 ORTHO05D006249 3.5e-232 808.9 887 48.4
Sc04g0005990 Simmondsia chinensis HOM05D004962 ORTHO05D006249 7.9e-232 807.7 855 50.5
CSS0034119 Camellia sinensis var. sinensis HOM05D004962 ORTHO05D006249 1.5e-230 803.5 850 51.3
Os08g0493900 Oryza sativa ssp. japonica HOM05D004962 ORTHO05D006249 2.5e-230 802.7 859 48.9
EL10Ac6g14300 Beta vulgaris HOM05D004962 ORTHO05D006249 7.4e-230 801.2 872 49.9
PSO063G7634 Papaver somniferum HOM05D004962 ORTHO05D006249 1.1e-228 797.3 865 50.1
C06p04260 Brassica napus HOM05D004962 ORTHO05D006249 3.1e-228 795.8 838 49.9
THA.LOC104811357 Tarenaya hassleriana HOM05D004962 ORTHO05D006249 6.9e-228 794.7 855 49.9
BcaC08g43144 Brassica carinata HOM05D004962 ORTHO05D006249 1.2e-227 793.9 838 49.6
Thhalv10011237m.g Eutrema salsugineum HOM05D004962 ORTHO05D006249 1.2e-227 793.9 851 49.1
BolC6t35550H Brassica oleracea HOM05D004962 ORTHO05D006249 2.0e-227 793.1 839 49.9
BraA06t23589Z Brassica rapa HOM05D004962 ORTHO05D006249 3.4e-227 792.3 843 49.6
Haze_00658 Corylus avellana HOM05D004962 ORTHO05D006249 3.4e-227 792.3 991 45.0
BcaB07g33669 Brassica carinata HOM05D004962 ORTHO05D006249 4.5e-227 792.0 840 49.5
A06p03820 Brassica napus HOM05D004962 ORTHO05D006249 7.6e-227 791.2 845 49.7
Sp1g36410 Schrenkiella parvula HOM05D004962 ORTHO05D006249 1.3e-226 790.4 851 49.2
BcaB04g17325 Brassica carinata HOM05D004962 ORTHO05D006249 8.4e-226 787.7 840 49.2
PSO782G5688 Papaver somniferum HOM05D004962 ORTHO05D006249 8.4e-226 787.7 872 49.0
Carub.0001s3872 Capsella rubella HOM05D004962 ORTHO05D006249 1.1e-225 787.3 857 48.7
CARHR039570 Cardamine hirsuta HOM05D004962 ORTHO05D006249 5.5e-225 785.0 855 49.2
Aa31LG10G4460 Aethionema arabicum HOM05D004962 ORTHO05D006249 1.6e-224 783.5 848 49.1
AL1G56890 Arabidopsis lyrata HOM05D004962 ORTHO05D006249 2.7e-224 782.7 859 48.7
TPR.G18855 Trifolium pratense HOM05D004962 ORTHO05D006249 7.4e-222 774.6 773 52.7
Oeu048367.1 Olea europaea HOM05D004962 ORTHO05D006249 1.4e-220 770.4 946 45.6
AT1G49540 Arabidopsis thaliana HOM05D004962 ORTHO05D006249 1.8e-220 770.0 859 48.2
vmacro10604 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 2.1e-216 756.5 752 52.7
QL01p010697 Quercus lobata HOM05D004962 ORTHO05D006249 1.8e-215 753.4 855 48.3
Actinidia14925 Actinidia chinensis HOM05D004962 ORTHO05D006249 5.1e-215 751.9 794 50.9
CDE06G0233 Ceratophyllum demersum HOM05D004962 ORTHO05D006249 3.6e-208 729.2 848 46.7
SHI16242 Sapria himalayana HOM05D004962 ORTHO05D006249 1.0e-202 711.1 850 45.9
Ah.03g138470 Amaranthus hybridus HOM05D004962 ORTHO05D006249 3.1e-196 689.5 667 53.2
TAR371G0254 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.5e-179 632.9 581 54.9
Gohir.A10G178200 Gossypium hirsutum HOM05D004962 ORTHO05D006249 9.8e-174 614.8 645 51.6
Cpa.g.sc65.71 Carica papaya HOM05D004962 ORTHO05D006249 7.5e-150 535.4 851 38.7
unitig_699.g19525 Utricularia gibba HOM05D004962 ORTHO05D006249 1.9e-148 530.8 825 39.6
COL.COLO4_32126 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.2e-112 409.5 417 51.3
HPP92_023439 Vanilla planifolia HOM05D004962 ORTHO05D006249 2.7e-107 394.0 413 48.7
Aa31LG10G4060 Aethionema arabicum HOM05D004962 ORTHO05D006249 2.1e-104 384.4 346 54.6
COL.COLO4_32127 Corchorus olitorius HOM05D004962 ORTHO05D006249 6.5e-101 372.9 470 44.5
MCO16G399 Micromonas commoda HOM05D004962 ORTHO05D006249 2.4e-95 354.4 1016 29.1
Cre10.g462750 Chlamydomonas reinhardtii HOM05D004962 ORTHO05D006249 2.5e-92 344.4 811 30.7
HPP92_023440 Vanilla planifolia HOM05D004962 ORTHO05D006249 7.4e-89 332.8 359 47.6
Cfa023883 Carpinus fangiana HOM05D004962 ORTHO05D006249 4.1e-87 327.0 866 29.7
Actinidia16688 Actinidia chinensis HOM05D004962 ORTHO05D006249 1.4e-82 312.0 263 58.2
SEGI_12856 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 9.7e-81 305.8 266 56.4
SEGI_20231 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 1.6e-75 288.5 311 49.5
TAR371G1111 Trochodendron aralioides HOM05D004962 ORTHO05D006249 6.1e-67 260.0 193 61.1
ClCG04G012840 Citrullus lanatus HOM05D004962 ORTHO05D001482 1.5e-65 255.4 513 34.7
MD07G1141900 Malus domestica HOM05D004962 ORTHO05D006249 2.6e-65 254.6 189 64.6
Dinv31590 Davidia involucrata HOM05D004962 ORTHO05D006249 7.7e-62 243.0 217 57.6
Sed0004719 Sechium edule HOM05D004962 ORTHO05D006249 1.1e-52 212.6 386 35.5
MD07G1142000 Malus domestica HOM05D004962 ORTHO05D006249 1.2e-46 192.6 300 39.0
TAR371G0924 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-43 182.6 229 42.8
BcaC07g37033 Brassica carinata HOM05D004962 ORTHO05D006249 4.7e-43 180.6 242 43.0
Dinv31591 Davidia involucrata HOM05D004962 ORTHO05D006249 2.8e-35 154.8 240 40.0
C08p04030 Brassica napus HOM05D004962 ORTHO05D006249 7.1e-31 140.2 212 39.2
A08p03840 Brassica napus HOM05D004962 ORTHO05D006249 2.5e-28 131.7 203 38.9
BraA08t32413Z Brassica rapa HOM05D004962 ORTHO05D006249 2.5e-28 131.7 203 38.9
SEGI_09159 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 3.4e-25 121.3 149 44.3
CBR_g37253 Chara braunii HOM05D004962 ORTHO05D000048 1.9e-23 115.5 151 43.0
TAR371G0141 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.5e-20 105.9 97 53.6
SEGI_19116 Sequoiadendron giganteum HOM05D004962 ORTHO05D006249 4.4e-17 94.4 56 73.2
vmacro10603 Vaccinium macrocarpon HOM05D004962 ORTHO05D006249 9.3e-15 86.7 128 39.1
PGSC0003DMG400024407 Solanum tuberosum HOM05D004962 ORTHO05D006249 1.2e-14 86.3 97 46.4
SMO367G0692 Selaginella moellendorffii HOM05D065085 ORTHO05D376097 2.7e-14 85.1 56 73.2
BcaB02g11086 Brassica carinata HOM05D004962 ORTHO05D006249 9.6e-12 76.6 148 33.1
A05p20570 Brassica napus HOM05D004962 ORTHO05D040710 1.3e-11 76.3 116 39.7
Dinv31589 Davidia involucrata HOM05D004962 ORTHO05D006249 6.2e-11 73.9 96 41.7
BolC8t47195H Brassica oleracea HOM05D004962 ORTHO05D006249 1.8e-10 72.4 104 40.4
BraA05t20967Z Brassica rapa HOM05D004962 ORTHO05D040710 4.0e-10 71.2 116 38.8
TAR371G0959 Trochodendron aralioides HOM05D004962 ORTHO05D006249 1.2e-09 69.7 72 45.8
SMO343G0134 Selaginella moellendorffii HOM05D065085 ORTHO05D376409 2.0e-09 68.9 56 66.1
PGSC0003DMG400031444 Solanum tuberosum HOM05D004962 ORTHO05D006249 2.0e-09 68.9 68 50.0
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 3.4e-09 68.2 59 40.7
TAR371G1015 Trochodendron aralioides HOM05D004962 ORTHO05D006249 3.8e-08 64.7 64 54.7
TPR.G18842 Trifolium pratense HOM05D004962 ORTHO05D006249 1.1e-07 63.2 83 39.8
C08p04020 Brassica napus HOM05D004962 ORTHO05D006249 5.4e-07 60.8 66 45.5
Aa31sc210G50 Aethionema arabicum HOM05D004768 ORTHO05D005812 2.1e-06 58.9 140 25.7
Actinidia16687 Actinidia chinensis HOM05D004962 ORTHO05D006249 6.0e-06 57.4 38 60.5


User provided reference genes

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