Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0717 Selaginella moellendorffii HOM05D007141 ORTHO05D008975 3.0e-33 144.4 65 100.0
SEGI_38617 Sequoiadendron giganteum HOM05D007141 ORTHO05D008975 1.6e-10 68.9 65 44.6
Eucgr.L02859 Eucalyptus grandis HOM05D007141 ORTHO05D008975 4.6e-10 67.4 65 44.6
AL7G18460 Arabidopsis lyrata HOM05D007141 ORTHO05D008975 6.1e-10 67.0 65 43.1
AT4G33100 Arabidopsis thaliana HOM05D007141 ORTHO05D008975 6.1e-10 67.0 65 43.1
A08p17770 Brassica napus HOM05D007141 ORTHO05D008975 7.9e-10 66.6 65 43.1
Carub.0007s0735 Capsella rubella HOM05D007141 ORTHO05D008975 7.9e-10 66.6 65 43.1
FAN15G0931 Fragaria x ananassa HOM05D007141 ORTHO05D008975 7.9e-10 66.6 65 43.1
FAN24G3331 Fragaria x ananassa HOM05D007141 ORTHO05D008975 7.9e-10 66.6 65 43.1
FAN27G0109 Fragaria x ananassa HOM05D007141 ORTHO05D008975 7.9e-10 66.6 65 43.1
C03p86820 Brassica napus HOM05D007141 ORTHO05D008975 1.0e-09 66.2 65 43.1
BraA08t33728Z Brassica rapa HOM05D007141 ORTHO05D008975 1.0e-09 66.2 65 43.1
RcHm_v2.0_Chr6g0311391 Rosa chinensis HOM05D007141 ORTHO05D008975 1.0e-09 66.2 65 44.6
RcHm_v2.0_Chr7g0222241 Rosa chinensis HOM05D007141 ORTHO05D008975 1.0e-09 66.2 65 44.6
Aa31LG1G7350 Aethionema arabicum HOM05D007141 ORTHO05D008975 1.3e-09 65.9 65 43.1
AUR62009107 Chenopodium quinoa HOM05D007141 ORTHO05D008975 1.3e-09 65.9 65 41.5
Thhalv10026676m.g Eutrema salsugineum HOM05D007141 ORTHO05D008975 1.3e-09 65.9 65 41.5
FvH4_2g31430 Fragaria vesca HOM05D007141 ORTHO05D008975 1.3e-09 65.9 65 43.1
GSVIVG01035422001 Vitis vinifera HOM05D007141 ORTHO05D008975 1.3e-09 65.9 65 41.5
Atru.chr7.1922 Acer truncatum HOM05D007141 ORTHO05D008975 1.8e-09 65.5 64 42.2
BolC3t20976H Brassica oleracea HOM05D007141 ORTHO05D008975 1.8e-09 65.5 57 49.1
Hund03309 Selenicereus undatus HOM05D007141 ORTHO05D008975 1.8e-09 65.5 65 43.1
Mapoly0108s0048 Marchantia polymorpha HOM05D007141 ORTHO05D008975 2.3e-09 65.1 68 44.1
Ah.10g034080 Amaranthus hybridus HOM05D007141 ORTHO05D008975 3.0e-09 64.7 61 42.6
CARHR241130 Cardamine hirsuta HOM05D007141 ORTHO05D008975 3.0e-09 64.7 65 40.0
Manes.16G083100 Manihot esculenta HOM05D007141 ORTHO05D008975 3.0e-09 64.7 65 40.0
QL02p000427 Quercus lobata HOM05D007141 ORTHO05D008975 3.0e-09 64.7 61 42.6
Sp7g30850 Schrenkiella parvula HOM05D007141 ORTHO05D008975 3.0e-09 64.7 65 40.0
EL10Ac2g03813 Beta vulgaris HOM05D007141 ORTHO05D008975 3.9e-09 64.3 62 41.9
Potri.006G224400 Populus trichocarpa HOM05D007141 ORTHO05D008975 3.9e-09 64.3 63 41.3
Prupe.1G407800 Prunus persica HOM05D007141 ORTHO05D008975 3.9e-09 64.3 62 41.9
Sabra06G0173500 Salix brachista HOM05D007141 ORTHO05D008975 3.9e-09 64.3 63 41.3
Haze_18140 Corylus avellana HOM05D007141 ORTHO05D008975 5.1e-09 63.9 64 40.6
Ciclev10010008m.g Citrus clementina HOM05D007141 ORTHO05D008975 8.7e-09 63.2 65 40.0
TWI34G1430 Tripterygium wilfordii HOM05D007141 ORTHO05D008975 8.7e-09 63.2 56 50.0
Eucgr.C03070 Eucalyptus grandis HOM05D007141 ORTHO05D008975 1.1e-08 62.8 52 51.9
arahy.Tifrunner.gnm1.ann1.L1P6F7 Arachis hypogaea HOM05D007141 ORTHO05D008975 1.5e-08 62.4 53 47.2
CANSAT25G2947 Cannabis sativa HOM05D007141 ORTHO05D008975 1.5e-08 62.4 58 41.4
Duzib150G0643 Durio zibethinus HOM05D007141 ORTHO05D008975 1.5e-08 62.4 65 38.5
HanXRQChr10g0309781 Helianthus annuus HOM05D007141 ORTHO05D008975 1.5e-08 62.4 65 40.0
PSO832G0110 Papaver somniferum HOM05D007141 ORTHO05D008975 1.5e-08 62.4 61 44.3
ClCG08G009990 Citrullus lanatus HOM05D000426 ORTHO05D000328 1.9e-08 62.0 65 40.0
DCAR_003142 Daucus carota HOM05D007141 ORTHO05D008975 1.9e-08 62.0 62 38.7
Glyma.06G053600 Glycine max HOM05D007141 ORTHO05D008975 1.9e-08 62.0 53 47.2
MD08G1067500 Malus domestica HOM05D007141 ORTHO05D008975 1.9e-08 62.0 62 40.3
MD09G1070200 Malus domestica HOM05D007141 ORTHO05D008975 1.9e-08 62.0 62 40.3
Thecc.09G058700 Theobroma cacao HOM05D007141 ORTHO05D008975 1.9e-08 62.0 65 38.5
Lalb_Chr08g0244921 Lupinus albus HOM05D007141 ORTHO05D008975 2.5e-08 61.6 58 41.4
BcaC09g52111 Brassica carinata HOM05D007141 ORTHO05D008975 3.3e-08 61.2 65 41.5
MELO3C011470.2 Cucumis melo HOM05D007141 ORTHO05D008975 3.3e-08 61.2 65 40.0
CsaV3_6G032120 Cucumis sativus L. HOM05D007141 ORTHO05D008975 3.3e-08 61.2 65 40.0
ECA234G1667 Erigeron canadensis HOM05D007141 ORTHO05D008975 3.3e-08 61.2 58 43.1
A01p05100 Brassica napus HOM05D007141 ORTHO05D008975 4.3e-08 60.8 65 41.5
BolC1t00538H Brassica oleracea HOM05D007141 ORTHO05D008975 4.3e-08 60.8 65 40.0
BraA01t00493Z Brassica rapa HOM05D007141 ORTHO05D008975 4.3e-08 60.8 65 41.5
Oeu034195.1 Olea europaea HOM05D007141 ORTHO05D008975 5.7e-08 60.5 62 37.1
BcaC09g52107 Brassica carinata HOM05D007141 ORTHO05D008975 7.4e-08 60.1 65 40.0
Rhsim05G0069200 Rhododendron simsii HOM05D007141 ORTHO05D008975 7.4e-08 60.1 65 40.0
SalBow4G0322 Salvia bowleyana HOM05D007141 ORTHO05D008975 7.4e-08 60.1 65 38.5
vmacro17441 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 7.4e-08 60.1 65 36.9
vmacro22570 Vaccinium macrocarpon HOM05D007141 ORTHO05D008975 7.4e-08 60.1 65 36.9
C01p05580 Brassica napus HOM05D007141 ORTHO05D008975 9.7e-08 59.7 64 40.6
Dinv12459 Davidia involucrata HOM05D007141 ORTHO05D008975 1.3e-07 59.3 65 38.5
Lsat_1_v5_gn_5_78660 Lactuca sativa HOM05D007141 ORTHO05D008975 1.3e-07 59.3 65 35.4
Sed0026589 Sechium edule HOM05D007141 ORTHO05D008975 1.3e-07 59.3 62 38.7
Phvul.009G079400 Phaseolus vulgaris HOM05D007141 ORTHO05D008975 1.6e-07 58.9 53 45.3
Cc08_g11030 Coffea canephora HOM05D007141 ORTHO05D008975 2.8e-07 58.2 58 37.9
Nitab4.5_0002797g0020 Nicotiana tabacum HOM05D007141 ORTHO05D008975 2.8e-07 58.2 63 36.5
Psat5g035560 Pisum sativum HOM05D007141 ORTHO05D008975 2.8e-07 58.2 63 38.1
VMungo1309G2876 Vigna mungo HOM05D007141 ORTHO05D008975 2.8e-07 58.2 53 45.3
ATR0051G046 Amborella trichopoda HOM05D007141 ORTHO05D008975 3.7e-07 57.8 48 52.1
CSS0014882 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 3.7e-07 57.8 65 36.9
TPR.G3578 Trifolium pratense HOM05D007141 ORTHO05D008975 3.7e-07 57.8 62 38.7
CSS0018983 Camellia sinensis var. sinensis HOM05D007141 ORTHO05D008975 4.8e-07 57.4 65 36.9
Migut.A00104 Erythranthe guttata HOM05D007141 ORTHO05D008975 4.8e-07 57.4 61 36.1
Hma1.2p1_0644F.1_g194800 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 4.8e-07 57.4 52 46.2
Hma1.2p1_1832F.1_g304585 Hydrangea macrophylla HOM05D007141 ORTHO05D008975 4.8e-07 57.4 52 46.2
CAN.G1181.10 Capsicum annuum HOM05D007141 ORTHO05D008975 6.3e-07 57.0 61 36.1
Sc09g0009950 Simmondsia chinensis HOM05D007141 ORTHO05D008975 6.3e-07 57.0 47 51.1
Lj1g0005823 Lotus japonicus HOM05D007141 ORTHO05D008975 8.2e-07 56.6 62 40.3
Solyc08g062620.3 Solanum lycopersicum HOM05D007141 ORTHO05D008975 8.2e-07 56.6 58 36.2
Sopen08g018140 Solanum pennellii HOM05D007141 ORTHO05D008975 8.2e-07 56.6 58 36.2
PGSC0003DMG400008211 Solanum tuberosum HOM05D007141 ORTHO05D008975 8.2e-07 56.6 58 36.2
unitig_0.g2555 Utricularia gibba HOM05D007141 ORTHO05D008975 8.2e-07 56.6 58 36.2
Atru.BG.111.p Acer truncatum HOM05D007141 ORTHO05D008975 1.8e-06 55.5 51 47.1
Actinidia25707 Actinidia chinensis HOM05D007141 ORTHO05D008975 1.8e-06 55.5 61 36.1


User provided reference genes

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