Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 1.0e-156 556.6 266 100.0
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 6.3e-106 387.9 268 65.3
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 1.5e-102 376.7 270 64.1
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 3.4e-99 365.5 249 65.9
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 2.4e-97 359.4 268 60.4
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 5.0e-95 351.7 267 61.8
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 6.6e-95 351.3 272 60.3
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.5e-94 350.1 267 61.0
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.5e-94 350.1 269 61.3
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.9e-94 349.7 270 61.5
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 1.9e-94 349.7 272 60.7
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 1.9e-94 349.7 272 60.7
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 5.6e-94 348.2 270 61.5
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 5.6e-94 348.2 258 62.8
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 3.6e-93 345.5 267 60.7
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 8.0e-93 344.4 267 59.9
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 1.1e-92 344.0 271 59.8
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.8e-92 343.2 271 59.4
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 1.8e-92 343.2 267 60.7
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.8e-92 343.2 267 60.3
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 2.3e-92 342.8 265 61.5
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 4.0e-92 342.0 271 59.8
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 4.0e-92 342.0 267 60.7
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 5.2e-92 341.7 270 59.3
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 6.8e-92 341.3 264 61.4
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.9e-92 340.9 267 61.0
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.5e-91 340.1 267 60.3
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 2.0e-91 339.7 266 61.3
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 2.0e-91 339.7 267 61.0
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.4e-91 338.6 266 59.8
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 5.8e-91 338.2 264 60.6
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 5.8e-91 338.2 267 60.7
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 7.5e-91 337.8 271 59.4
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 7.5e-91 337.8 271 59.8
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.2e-90 336.3 263 60.5
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 3.7e-90 335.5 267 59.2
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 3.7e-90 335.5 271 60.5
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 6.4e-90 334.7 271 58.7
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 6.4e-90 334.7 272 57.0
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 6.4e-90 334.7 267 59.2
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-89 334.0 267 59.2
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 1.4e-89 333.6 263 60.5
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 1.9e-89 333.2 262 59.5
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 1.9e-89 333.2 271 58.3
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 2.4e-89 332.8 267 58.4
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 2.4e-89 332.8 263 59.7
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 4.1e-89 332.0 270 58.1
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 4.1e-89 332.0 267 59.9
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 5.4e-89 331.6 267 59.2
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 7.0e-89 331.3 261 58.6
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.2e-89 330.9 261 59.8
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 1.2e-88 330.5 261 59.8
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 2.0e-88 329.7 266 58.3
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 2.0e-88 329.7 271 59.4
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 2.0e-88 329.7 267 60.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 3.5e-88 328.9 264 58.3
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 4.6e-88 328.6 265 59.6
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 7.8e-88 327.8 271 59.4
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 1.3e-87 327.0 271 57.9
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 1.3e-87 327.0 267 59.2
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 5.0e-87 325.1 267 57.3
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 5.0e-87 325.1 271 58.7
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 6.6e-87 324.7 263 58.9
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 6.6e-87 324.7 267 58.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 1.1e-86 323.9 263 59.3
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 1.1e-86 323.9 265 58.1
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 4.3e-86 322.0 243 60.9
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 4.3e-86 322.0 270 57.0
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 5.6e-86 321.6 262 59.9
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.2e-85 320.5 267 57.3
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-85 320.5 271 58.3
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 1.6e-85 320.1 267 56.9
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-85 320.1 270 55.9
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 2.1e-85 319.7 263 57.4
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 2.8e-85 319.3 267 57.7
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 6.2e-85 318.2 271 58.7
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 8.1e-85 317.8 264 56.4
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 1.1e-84 317.4 271 55.7
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.1e-84 317.4 266 56.0
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 1.8e-84 316.6 267 56.9
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 5.2e-84 315.1 267 58.1
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 8.9e-84 314.3 270 55.2
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 8.9e-84 314.3 270 55.2
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.5e-83 313.5 267 56.9
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.0e-83 313.2 270 55.6
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 3.4e-83 312.4 266 56.4
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.5e-83 311.2 266 57.1
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 9.9e-83 310.8 266 56.0
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 1.3e-82 310.5 279 55.6
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 1.3e-82 310.5 267 56.9
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 1.3e-82 310.5 267 55.8
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 2.2e-82 309.7 263 57.8
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 2.9e-82 309.3 267 57.3
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 3.7e-82 308.9 266 56.4
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 3.7e-82 308.9 263 55.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.1e-81 307.4 281 55.2
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 1.4e-81 307.0 263 57.4
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 3.2e-81 305.8 263 57.4
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 4.1e-81 305.4 260 55.8
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 5.4e-81 305.1 266 56.4
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 5.1e-79 298.5 270 55.2
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 2.1e-77 293.1 270 50.7
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 4.0e-76 288.9 262 56.1
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 2.0e-75 286.6 254 56.3
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 4.4e-75 285.4 269 53.2
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.7e-74 283.5 266 53.0
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.2e-73 279.3 270 54.1
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.7e-69 265.4 229 56.8
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 9.9e-67 257.7 319 43.3
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.3e-66 257.3 267 51.7
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.7e-66 256.9 266 48.5
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 1.4e-65 253.8 261 51.0
Aqoxy4G00762 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 4.2e-65 252.3 266 48.1
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 3.9e-63 245.7 193 60.6
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 5.1e-55 218.8 182 57.7
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.1e-54 217.6 254 46.5
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.3e-53 214.2 173 61.3
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.2e-53 211.8 216 48.6
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 8.4e-50 201.4 268 42.5
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 9.0e-44 181.4 268 39.6
Cre06.g305050 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 5.8e-43 178.7 284 37.0
MCO11G820 Micromonas commoda HOM05D004937 ORTHO05D006414 2.2e-42 176.8 287 36.6
Dinv13906 Davidia involucrata HOM05D004937 ORTHO05D006414 7.9e-40 168.3 270 37.4
PRCOL_00004553 Prasinoderma coloniale HOM05D004937 ORTHO05D006414 2.5e-38 163.3 285 35.1
BcaB08g37427 Brassica carinata HOM05D004937 ORTHO05D006414 1.8e-36 157.1 179 47.5
AagrBONN_evm.TU.Sc2ySwM_368.2061 Anthoceros agrestis HOM05D004937 ORTHO05D006414 4.1e-36 156.0 121 58.7
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 2.6e-35 153.3 137 54.7
QL05p072848 Quercus lobata HOM05D004937 ORTHO05D006414 1.0e-34 151.4 136 55.9
BcaB08g37425 Brassica carinata HOM05D004937 ORTHO05D006414 2.7e-32 143.3 137 54.0
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 9.7e-30 134.8 151 44.4
Cre06.g305250 Chlamydomonas reinhardtii HOM05D004937 ORTHO05D006414 9.1e-28 128.3 279 31.5
Dinv13905 Davidia involucrata HOM05D004937 ORTHO05D006414 2.6e-27 126.7 103 61.2
ClCG03G004650 Citrullus lanatus HOM05D000020 ORTHO05D000904 4.8e-21 105.9 80 61.2
BcaB08g37428 Brassica carinata HOM05D004937 ORTHO05D006414 3.4e-19 99.8 70 61.4
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 3.4e-19 99.8 74 60.8
Lj2C267G4 Lonicera japonica HOM05D004937 ORTHO05D006414 7.7e-19 98.6 96 52.1
Dinv13904 Davidia involucrata HOM05D004937 ORTHO05D006414 8.5e-18 95.1 65 58.5
Os10g0401100 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 8.5e-10 68.6 49 59.2
PSO832G4260 Papaver somniferum HOM05D004937 ORTHO05D002819 2.1e-08 63.9 67 49.3
Dinv30719 Davidia involucrata HOM05D004937 ORTHO05D006414 6.1e-08 62.4 66 42.4
Os07g0510800 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.2e-06 58.2 58 50.0
CSS0014831 Camellia sinensis var. sinensis HOM05D000003 ORTHO05D000004 3.3e-06 56.6 37 62.2
SGA_v2.0_scaffold4G01909 Striga asiatica HOM05D004937 ORTHO05D006414 4.4e-06 56.2 35 65.7


User provided reference genes

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