Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0221 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.8e-104 382.5 175 100.0
SMO361G0519 Selaginella moellendorffii HOM05D002335 ORTHO05D006692 1.8e-104 382.5 175 100.0
Mapoly0146s0032 Marchantia polymorpha HOM05D002335 ORTHO05D006692 2.4e-69 265.8 175 65.7
AagrBONN_evm.TU.Sc2ySwM_368.521 Anthoceros agrestis HOM05D002335 ORTHO05D006692 5.0e-59 231.5 200 51.0
AagrBONN_evm.TU.Sc2ySwM_368.225 Anthoceros agrestis HOM05D002335 ORTHO05D006692 1.8e-53 213.0 196 48.5
ATR0598G258 Amborella trichopoda HOM05D002335 ORTHO05D006692 4.1e-53 211.8 175 50.9
Actinidia29931 Actinidia chinensis HOM05D002335 ORTHO05D006692 2.1e-49 199.5 174 47.7
Dinv25560 Davidia involucrata HOM05D002335 ORTHO05D006692 2.1e-49 199.5 172 48.3
ECA240G4665 Erigeron canadensis HOM05D002335 ORTHO05D006692 2.7e-49 199.1 174 47.7
Sc18g0002530 Simmondsia chinensis HOM05D002335 ORTHO05D006692 6.1e-49 198.0 173 47.4
AUR62025248 Chenopodium quinoa HOM05D002335 ORTHO05D006692 8.0e-49 197.6 172 50.0
AUR62028936 Chenopodium quinoa HOM05D002335 ORTHO05D006692 8.0e-49 197.6 172 50.0
Hma1.2p1_0169F.1_g074550 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.0e-48 197.2 175 47.4
Hma1.2p1_0169F.1_g074601 Hydrangea macrophylla HOM05D002335 ORTHO05D006692 1.0e-48 197.2 175 47.4
Pp3c2_1630 Physcomitrium patens HOM05D002335 ORTHO05D006692 1.4e-48 196.8 171 47.4
MBI13_g42820_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 2.3e-48 196.1 170 48.8
TAR626G0579 Trochodendron aralioides HOM05D002335 ORTHO05D006692 3.0e-48 195.7 175 48.6
CSS0035766 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.0e-48 195.3 175 47.4
CSS0046237 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006692 4.0e-48 195.3 175 47.4
Migut.L01564 Erythranthe guttata HOM05D002335 ORTHO05D006692 5.2e-48 194.9 172 46.5
Zm00001eb081660 Zea mays HOM05D002335 ORTHO05D006692 6.8e-48 194.5 170 46.5
Hund26036 Selenicereus undatus HOM05D002335 ORTHO05D006692 8.8e-48 194.1 172 48.3
Nn6g35620 Nelumbo nucifera HOM05D002335 ORTHO05D006692 1.2e-47 193.7 174 46.0
TWI34G0950 Tripterygium wilfordii HOM05D002335 ORTHO05D006692 1.2e-47 193.7 175 48.0
CDE05G1851 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.5e-47 193.4 172 47.1
SGA_v2.0_scaffold308G48074 Striga asiatica HOM05D002335 ORTHO05D006692 2.0e-47 193.0 171 46.8
EL10Ac8g19062 Beta vulgaris HOM05D002335 ORTHO05D006692 2.6e-47 192.6 172 45.9
SalBow5G0979 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.4e-47 191.8 172 47.1
SalBow5G2105 Salvia bowleyana HOM05D002335 ORTHO05D006692 4.4e-47 191.8 172 47.1
PGSC0003DMG400013000 Solanum tuberosum HOM05D002335 ORTHO05D006692 4.4e-47 191.8 171 46.2
CiPaw.04G143300 Carya illinoinensis HOM05D002335 ORTHO05D006692 5.7e-47 191.4 173 46.2
Ciclev10009634m.g Citrus clementina HOM05D002335 ORTHO05D006692 5.7e-47 191.4 175 45.1
Lj4g0006964 Lotus japonicus HOM05D002335 ORTHO05D006692 7.5e-47 191.0 173 46.2
Aqoxy7G04078 Aquilegia oxysepala HOM05D002335 ORTHO05D006692 1.3e-46 190.3 171 45.6
Psat4g017640 Pisum sativum HOM05D002335 ORTHO05D006692 1.7e-46 189.9 173 46.2
Cfa002991 Carpinus fangiana HOM05D002335 ORTHO05D006692 2.2e-46 189.5 173 45.1
Haze_26010 Corylus avellana HOM05D002335 ORTHO05D006692 2.2e-46 189.5 173 45.1
RcHm_v2.0_Chr2g0094901 Rosa chinensis HOM05D002335 ORTHO05D006692 2.2e-46 189.5 172 46.5
Aa31sc133G40 Aethionema arabicum HOM05D002335 ORTHO05D006692 2.8e-46 189.1 173 46.2
PSO135G0567 Papaver somniferum HOM05D002335 ORTHO05D006692 2.8e-46 189.1 173 46.8
Sopen12g004030 Solanum pennellii HOM05D002335 ORTHO05D006692 3.7e-46 188.7 171 45.6
Solyc07g041780.3 Solanum lycopersicum HOM05D002335 ORTHO05D006692 4.9e-46 188.3 171 45.6
Glyma.17G049400 Glycine max HOM05D002335 ORTHO05D006692 6.3e-46 188.0 172 45.9
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 6.3e-46 188.0 173 45.1
Manes.03G040300 Manihot esculenta HOM05D002335 ORTHO05D006692 6.3e-46 188.0 175 45.7
Glyma.13G110300 Glycine max HOM05D002335 ORTHO05D006692 8.3e-46 187.6 172 45.9
Phvul.003G130900 Phaseolus vulgaris HOM05D002335 ORTHO05D006692 1.1e-45 187.2 173 45.7
Potri.018G065800 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.1e-45 187.2 175 45.7
GSVIVG01015085001 Vitis vinifera HOM05D002335 ORTHO05D006692 1.1e-45 187.2 174 45.4
PGR044G0908 Punica granatum HOM05D002335 ORTHO05D006692 1.4e-45 186.8 173 45.1
QL11p000707 Quercus lobata HOM05D002335 ORTHO05D006692 1.8e-45 186.4 173 45.1
Peaxi162Scf00127g00206 Petunia axillaris HOM05D002335 ORTHO05D006692 2.4e-45 186.0 171 44.4
Pp3c14_25980 Physcomitrium patens HOM05D002335 ORTHO05D006692 2.4e-45 186.0 180 44.4
MBI19_g11823_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.1e-45 185.7 168 46.4
MBI19_g37791_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006692 3.1e-45 185.7 168 46.4
Sed0014235 Sechium edule HOM05D002335 ORTHO05D006692 3.1e-45 185.7 173 45.7
MSTRG.10511 Avicennia marina HOM05D002335 ORTHO05D006692 5.4e-45 184.9 173 43.9
MELO3C015519.2 Cucumis melo HOM05D002335 ORTHO05D006692 7.0e-45 184.5 173 44.5
CsaV3_1G041010 Cucumis sativus L. HOM05D002335 ORTHO05D006692 9.1e-45 184.1 172 44.8
AT2G06010 Arabidopsis thaliana HOM05D002335 ORTHO05D006692 1.2e-44 183.7 173 45.1
Carub.0003s2714 Capsella rubella HOM05D002335 ORTHO05D006692 1.2e-44 183.7 173 44.5
ClCG03G015100 Citrullus lanatus HOM05D002335 ORTHO05D006692 1.2e-44 183.7 173 43.9
Oeu049119.1 Olea europaea HOM05D002335 ORTHO05D006692 1.2e-44 183.7 172 44.2
THA.LOC104826590 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.2e-44 183.7 171 44.4
BcaB06g26882 Brassica carinata HOM05D002335 ORTHO05D006692 1.6e-44 183.3 173 44.5
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 1.6e-44 183.3 173 44.5
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.6e-44 183.3 173 44.5
Gorai.010G088300 Gossypium raimondii HOM05D002335 ORTHO05D006692 1.6e-44 183.3 171 46.2
Potri.006G142000 Populus trichocarpa HOM05D002335 ORTHO05D006692 1.6e-44 183.3 172 44.2
Sopen07g021270 Solanum pennellii HOM05D002335 ORTHO05D006692 1.6e-44 183.3 171 45.0
VMungo1215G3327 Vigna mungo HOM05D002335 ORTHO05D006692 1.6e-44 183.3 176 45.5
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 2.0e-44 183.0 173 44.5
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 2.0e-44 183.0 173 44.5
Thhalv10008863m.g Eutrema salsugineum HOM05D002335 ORTHO05D006692 2.0e-44 183.0 173 44.5
BcaC06g35951 Brassica carinata HOM05D002335 ORTHO05D006692 2.7e-44 182.6 173 44.5
Cpa.g.sc28.42 Carica papaya HOM05D002335 ORTHO05D006692 2.7e-44 182.6 192 41.7
Gohir.A06G076400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 2.7e-44 182.6 171 46.2
Prupe.7G199200 Prunus persica HOM05D002335 ORTHO05D006692 2.7e-44 182.6 171 45.0
AL3G43590 Arabidopsis lyrata HOM05D002335 ORTHO05D006692 4.5e-44 181.8 173 45.1
Sp3g24590 Schrenkiella parvula HOM05D002335 ORTHO05D006692 5.9e-44 181.4 173 43.4
CARHR103670 Cardamine hirsuta HOM05D002335 ORTHO05D006692 1.0e-43 180.6 173 43.4
Rhsim05G0007700 Rhododendron simsii HOM05D002335 ORTHO05D006692 1.0e-43 180.6 157 46.5
DCAR_024750 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-43 180.3 174 43.1
DCAR_031919 Daucus carota HOM05D002335 ORTHO05D006692 1.3e-43 180.3 174 43.1
PGR044G2482 Punica granatum HOM05D002335 ORTHO05D006692 1.3e-43 180.3 173 44.5
Eucgr.C03267 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.7e-43 179.9 172 43.6
Eucgr.C03501 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.3e-43 179.5 172 43.0
Sed0016579 Sechium edule HOM05D002335 ORTHO05D006692 2.9e-43 179.1 173 44.5
FvH4_1g08630 Fragaria vesca HOM05D002335 ORTHO05D006692 3.8e-43 178.7 172 44.8
CANSAT56G4475 Cannabis sativa HOM05D002335 ORTHO05D006692 5.0e-43 178.3 165 43.6
Eucgr.C03348 Eucalyptus grandis HOM05D002335 ORTHO05D006692 5.0e-43 178.3 172 42.4
COL.COLO4_18100 Corchorus olitorius HOM05D002335 ORTHO05D006692 6.6e-43 177.9 188 41.0
vmacro17199 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 6.6e-43 177.9 204 39.7
Eucgr.C03340 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.1e-42 177.2 172 43.0
THA.LOC104815332 Tarenaya hassleriana HOM05D002335 ORTHO05D006692 1.1e-42 177.2 173 45.1
HanXRQChr03g0060151 Helianthus annuus HOM05D002335 ORTHO05D006692 1.5e-42 176.8 162 45.7
Eucgr.C03511 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.9e-42 176.4 172 42.4
Lalb_Chr12g0200131 Lupinus albus HOM05D002335 ORTHO05D006692 1.9e-42 176.4 172 44.8
FAN23G0492 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.5e-42 176.0 172 44.2
FAN28G2258 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.5e-42 176.0 172 44.2
PGSC0003DMG400000324 Solanum tuberosum HOM05D002335 ORTHO05D006692 3.3e-42 175.6 191 40.3
SEGI_04946 Sequoiadendron giganteum HOM05D002335 ORTHO05D006692 5.6e-42 174.9 120 62.5
HPP92_013380 Vanilla planifolia HOM05D002335 ORTHO05D006692 2.8e-41 172.6 143 49.7
Eucgr.H02780 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.6e-41 172.2 172 41.3
MD15G1217300 Malus domestica HOM05D002335 ORTHO05D006692 3.6e-41 172.2 172 41.9
CDE11G0744 Ceratophyllum demersum HOM05D002335 ORTHO05D006692 1.8e-40 169.9 195 40.5
MD02G1091100 Malus domestica HOM05D002335 ORTHO05D006692 2.3e-40 169.5 172 41.9
unitig_8.g3530 Utricularia gibba HOM05D002335 ORTHO05D006692 5.2e-40 168.3 176 41.5
CBR_g38469 Chara braunii HOM05D002335 ORTHO05D006692 1.5e-39 166.8 142 47.2
vmacro06340 Vaccinium macrocarpon HOM05D002335 ORTHO05D006692 1.5e-39 166.8 186 39.2
Cc06_g12140 Coffea canephora HOM05D002335 ORTHO05D006692 2.6e-39 166.0 145 46.2
FAN19G2961 Fragaria x ananassa HOM05D002335 ORTHO05D006692 2.6e-39 166.0 193 39.9
Dinv42391 Davidia involucrata HOM05D002335 ORTHO05D006692 3.7e-38 162.2 150 44.0
Eucgr.C03331 Eucalyptus grandis HOM05D002335 ORTHO05D006692 3.7e-38 162.2 161 41.6
TPR.G12576 Trifolium pratense HOM05D002335 ORTHO05D006692 1.1e-37 160.6 147 45.6
Atru.chr7.1701 Acer truncatum HOM05D002335 ORTHO05D006692 7.0e-37 157.9 163 42.3
Thecc.09G077400 Theobroma cacao HOM05D002335 ORTHO05D006692 1.2e-36 157.1 143 44.1
Medtr4g125360 Medicago truncatula HOM05D002335 ORTHO05D006692 1.6e-36 156.8 132 47.7
Solyc12g009080.2 Solanum lycopersicum HOM05D002335 ORTHO05D006692 2.7e-36 156.0 143 43.4
FAN26G1566 Fragaria x ananassa HOM05D002335 ORTHO05D006692 3.5e-36 155.6 214 35.5
FAN26G0120 Fragaria x ananassa HOM05D002335 ORTHO05D006692 4.6e-36 155.2 214 35.0
Sabra06G0111100 Salix brachista HOM05D002335 ORTHO05D006692 7.8e-36 154.5 145 44.1
CAN.G1963.2 Capsicum annuum HOM05D002335 ORTHO05D006692 1.0e-35 154.1 145 42.1
Ca_21321_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006692 1.9e-34 149.8 148 38.5
arahy.Tifrunner.gnm1.ann1.U5UTMI Arachis hypogaea HOM05D002335 ORTHO05D006692 4.7e-33 145.2 172 40.7
arahy.Tifrunner.gnm1.ann1.0T42SY Arachis hypogaea HOM05D002335 ORTHO05D006692 1.4e-32 143.7 172 39.0
unitig_899.g15177 Utricularia gibba HOM05D002335 ORTHO05D006692 2.3e-32 142.9 168 38.7
Nitab4.5_0000073g0180 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.2e-31 140.6 140 41.4
HPP92_013408 Vanilla planifolia HOM05D006937 ORTHO05D008747 6.4e-30 134.8 164 37.8
Peaxi162Scf00928g00035 Petunia axillaris HOM05D002335 ORTHO05D006692 5.4e-29 131.7 172 35.5
Rhsim03G0227700 Rhododendron simsii HOM05D002335 ORTHO05D006692 2.0e-28 129.8 266 27.1
Eucgr.C03278 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-28 129.4 116 44.0
Lj7A687T54 Lonicera japonica HOM05D002335 ORTHO05D006692 5.6e-26 121.7 183 36.1
Nitab4.5_0002966g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006692 6.8e-24 114.8 91 50.5
Gohir.D06G075400 Gossypium hirsutum HOM05D002335 ORTHO05D006692 1.2e-23 114.0 171 34.5
Ah.09g231610 Amaranthus hybridus HOM05D002335 ORTHO05D006692 2.0e-23 113.2 193 31.6
Eucgr.C03281 Eucalyptus grandis HOM05D002335 ORTHO05D006692 2.7e-20 102.8 88 47.7
HPP92_013382 Vanilla planifolia HOM05D002335 ORTHO05D006692 3.5e-20 102.4 92 43.5
Nitab4.5_0011754g0020 Nicotiana tabacum HOM05D002335 ORTHO05D006692 1.8e-16 90.1 171 31.6
Os04g0446200 Oryza sativa ssp. japonica HOM05D002335 ORTHO05D006692 2.6e-15 86.3 82 42.7
Eucgr.C03513 Eucalyptus grandis HOM05D002335 ORTHO05D006692 7.6e-15 84.7 105 37.1
Eucgr.L03294 Eucalyptus grandis HOM05D002335 ORTHO05D006692 1.4e-13 80.5 140 30.7
PRCOL_00001776 Prasinoderma coloniale HOM05D002335 ORTHO05D333757 1.7e-06 57.0 113 28.3


User provided reference genes

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