Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 0.0e+00 1457.2 753 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 4.6e-101 373.2 821 33.9
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 2.1e-90 337.8 855 30.8
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 1.7e-87 328.2 755 33.2
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 9.3e-86 322.4 787 32.5
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 1.9e-83 314.7 632 33.5
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 1.9e-83 314.7 766 33.2
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 1.9e-83 314.7 803 32.8
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 3.3e-83 313.9 675 33.8
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 7.3e-83 312.8 759 31.8
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.3e-82 312.0 756 31.7
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 2.1e-82 311.2 764 32.9
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 4.8e-82 310.1 770 32.9
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 4.8e-82 310.1 796 31.4
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 1.1e-81 308.9 773 32.9
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 3.1e-81 307.4 649 33.4
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 4.0e-81 307.0 757 31.4
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.5e-80 305.1 757 31.3
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 2.0e-80 304.7 786 31.4
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 2.6e-80 304.3 780 31.3
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 7.6e-80 302.8 798 31.2
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 9.9e-80 302.4 799 31.0
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 1.3e-79 302.0 801 31.2
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 2.2e-79 301.2 657 33.9
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 6.4e-79 299.7 786 31.3
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 8.4e-79 299.3 787 31.4
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 8.4e-79 299.3 750 31.5
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 8.4e-79 299.3 803 30.5
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 1.9e-78 298.1 780 31.7
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 2.4e-78 297.7 760 31.4
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-78 297.7 755 31.7
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-78 297.7 772 32.5
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 2.4e-78 297.7 608 34.2
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 3.2e-78 297.4 782 30.1
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 3.2e-78 297.4 803 30.6
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 4.2e-78 297.0 751 31.7
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 9.3e-78 295.8 784 31.8
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 9.3e-78 295.8 624 32.5
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 1.2e-77 295.4 621 33.8
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 1.6e-77 295.0 783 31.5
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 2.1e-77 294.7 661 33.4
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 2.1e-77 294.7 770 32.3
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 4.6e-77 293.5 786 31.7
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 7.9e-77 292.7 799 29.9
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.3e-76 292.0 782 30.8
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.8e-76 291.6 787 31.0
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 3.0e-76 290.8 805 30.1
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 3.0e-76 290.8 797 31.7
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 3.0e-76 290.8 799 30.2
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 8.7e-76 289.3 801 30.2
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 1.1e-75 288.9 706 32.3
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.1e-75 288.9 731 32.0
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.5e-75 288.5 804 31.1
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 1.9e-75 288.1 747 30.3
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 3.3e-75 287.3 787 31.1
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 3.3e-75 287.3 767 29.9
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 3.3e-75 287.3 709 31.7
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 4.3e-75 287.0 797 31.7
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 4.3e-75 287.0 810 30.5
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 5.6e-75 286.6 644 32.0
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 7.4e-75 286.2 796 30.7
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 7.4e-75 286.2 780 27.9
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 7.4e-75 286.2 626 33.2
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 9.6e-75 285.8 585 34.4
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.3e-74 285.4 686 31.2
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.3e-74 285.4 810 31.4
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.1e-74 284.6 686 31.6
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.1e-74 284.6 686 31.6
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 2.8e-74 284.3 585 34.2
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 3.7e-74 283.9 796 31.4
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 3.7e-74 283.9 815 30.4
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 4.8e-74 283.5 784 30.1
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 6.2e-74 283.1 811 31.2
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 8.1e-74 282.7 789 30.0
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.1e-73 282.3 789 30.0
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 1.4e-73 282.0 791 31.5
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 1.4e-73 282.0 791 31.5
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.4e-73 282.0 765 30.6
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 1.4e-73 282.0 694 31.3
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 2.4e-73 281.2 790 31.5
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 3.1e-73 280.8 722 31.9
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 3.1e-73 280.8 789 29.7
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 3.1e-73 280.8 671 31.1
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 1.2e-72 278.9 814 31.3
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.5e-72 278.5 677 31.9
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 1.5e-72 278.5 628 32.2
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 2.0e-72 278.1 624 31.7
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 2.6e-72 277.7 808 30.0
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 2.6e-72 277.7 777 28.3
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 3.4e-72 277.3 772 29.4
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 3.4e-72 277.3 671 31.0
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 4.5e-72 276.9 729 32.2
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.5e-72 276.9 616 31.5
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 7.6e-72 276.2 791 31.4
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 1.3e-71 275.4 796 29.1
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.7e-71 275.0 735 31.3
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 2.2e-71 274.6 775 29.7
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 4.9e-71 273.5 787 28.7
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 6.4e-71 273.1 664 30.9
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 1.1e-70 272.3 748 31.0
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 1.1e-70 272.3 655 33.3
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.1e-70 272.3 630 31.1
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 1.1e-70 272.3 669 30.3
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.2e-70 270.8 803 29.8
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 5.5e-70 270.0 645 31.2
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 5.5e-70 270.0 630 31.1
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 9.3e-70 269.2 621 32.7
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 9.3e-70 269.2 741 29.3
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.2e-69 268.9 804 29.6
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 1.2e-69 268.9 788 27.9
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.6e-69 268.5 808 30.4
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 1.6e-69 268.5 668 31.0
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 3.5e-69 267.3 646 31.0
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 3.5e-69 267.3 671 30.3
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 4.6e-69 266.9 625 30.7
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 6.0e-69 266.5 770 29.2
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 2.3e-68 264.6 625 32.2
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 5.1e-68 263.5 642 31.0
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 5.1e-68 263.5 609 31.7
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 1.1e-67 262.3 560 32.5
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 1.5e-67 261.9 709 30.3
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 5.6e-67 260.0 815 29.2
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 7.4e-67 259.6 511 33.7
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 1.3e-66 258.8 820 28.9
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 2.1e-66 258.1 667 30.3
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.1e-66 258.1 747 28.9
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 2.8e-66 257.7 798 29.6
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 8.2e-66 256.1 760 28.8
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 4.0e-65 253.8 667 29.8
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 6.9e-65 253.1 723 29.9
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 2.0e-64 251.5 519 32.8
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 2.6e-64 251.1 801 29.0
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 2.6e-64 251.1 641 30.7
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 2.6e-64 251.1 718 29.7
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 7.6e-64 249.6 799 28.4
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 3.8e-63 247.3 762 29.7
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 3.2e-62 244.2 607 32.8
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 6.0e-61 240.0 592 31.4
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 2.5e-59 234.6 776 30.3
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 2.5e-59 234.6 650 30.9
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 4.3e-59 233.8 613 29.9
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 5.7e-59 233.4 853 28.1
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 4.1e-57 227.3 674 28.6
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 7.9e-53 213.0 979 24.6
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 4.1e-49 200.7 839 25.9
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 5.3e-49 200.3 409 33.7
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 6.9e-49 199.9 600 30.5
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 3.4e-48 197.6 438 32.4
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 1.3e-42 179.1 418 31.8
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.7e-42 177.6 451 31.9
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.1e-41 176.0 328 34.8
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 9.1e-41 172.9 805 26.0
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.5e-40 170.6 588 28.6
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 4.5e-40 170.6 489 30.1
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 3.2e-38 164.5 436 31.4
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 8.8e-36 156.4 464 29.1
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 3.3e-27 127.9 721 24.0
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 4.1e-25 120.9 380 27.4
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 1.2e-24 119.4 352 29.8
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 5.9e-24 117.1 622 24.4
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 7.2e-22 110.2 247 32.4
COL.COLO4_22900 Corchorus olitorius HOM05D003493 ORTHO05D003980 4.7e-21 107.5 217 33.2
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 2.3e-20 105.1 146 39.7
arahy.Tifrunner.gnm1.ann1.28MV8S Arachis hypogaea HOM05D003493 ORTHO05D003980 1.4e-17 95.9 170 37.6
arahy.Tifrunner.gnm1.ann1.I3UW9X Arachis hypogaea HOM05D003493 ORTHO05D003980 2.0e-16 92.0 139 37.4
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.9e-14 85.5 158 34.2
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 2.5e-14 85.1 156 34.0
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 4.2e-14 84.3 156 33.3
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 1.4e-12 79.3 297 23.6
arahy.Tifrunner.gnm1.ann1.XZC4F6 Arachis hypogaea HOM05D003493 ORTHO05D003980 4.9e-10 70.9 155 31.6
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 3.1e-09 68.2 97 39.2
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 4.1e-09 67.8 135 33.3
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 2.0e-08 65.5 65 41.5
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 6.6e-07 60.5 212 26.9
Rhsim05G0011100 Rhododendron simsii HOM05D003493 ORTHO05D003980 2.5e-06 58.5 223 25.6
AUR62040636 Chenopodium quinoa HOM05D003493 ORTHO05D003980 7.3e-06 57.0 144 31.2


User provided reference genes

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