Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 2.0e-47 192.2 102 100.0
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 9.8e-15 83.6 83 45.8
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 1.7e-14 82.8 82 45.1
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 2.2e-14 82.4 88 43.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 2.2e-14 82.4 88 43.2
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 2.9e-14 82.0 85 44.7
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 2.9e-14 82.0 82 48.8
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 3.7e-14 81.6 85 44.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 4.9e-14 81.3 85 43.5
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 4.9e-14 81.3 85 44.7
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 6.4e-14 80.9 85 43.5
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 8.3e-14 80.5 85 43.5
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.1e-13 80.1 85 43.5
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.4e-13 79.7 85 43.5
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.4e-13 79.0 82 47.6
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 2.4e-13 79.0 82 43.9
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 3.2e-13 78.6 85 41.2
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 3.2e-13 78.6 85 40.0
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 4.1e-13 78.2 85 42.4
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 4.1e-13 78.2 85 42.4
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 4.1e-13 78.2 85 41.2
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 4.1e-13 78.2 85 42.4
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.1e-13 78.2 82 42.7
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.1e-13 78.2 82 42.7
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.1e-13 78.2 85 42.4
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.1e-13 78.2 82 42.7
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 5.4e-13 77.8 85 41.2
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 5.4e-13 77.8 85 42.4
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.4e-13 77.8 82 42.7
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 5.4e-13 77.8 81 43.2
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 5.4e-13 77.8 85 40.0
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 5.4e-13 77.8 85 41.2
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 5.4e-13 77.8 85 42.4
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 7.0e-13 77.4 83 41.0
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 7.0e-13 77.4 85 40.0
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 7.0e-13 77.4 85 42.4
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 9.2e-13 77.0 85 42.4
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 9.2e-13 77.0 82 42.7
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 9.2e-13 77.0 82 42.7
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 9.2e-13 77.0 85 41.2
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 1.2e-12 76.6 83 43.4
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 1.2e-12 76.6 83 42.2
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.6e-12 76.3 83 41.0
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.6e-12 76.3 85 42.4
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 1.6e-12 76.3 85 41.2
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.6e-12 76.3 81 42.0
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 2.0e-12 75.9 85 40.0
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 2.0e-12 75.9 81 45.7
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 2.7e-12 75.5 82 43.9
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 2.7e-12 75.5 82 43.9
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.7e-12 75.5 85 40.0
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 3.5e-12 75.1 85 40.0
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.5e-12 75.1 85 40.0
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 3.5e-12 75.1 85 40.0
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 3.5e-12 75.1 83 44.6
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 4.6e-12 74.7 82 42.7
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 4.6e-12 74.7 82 40.2
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 6.0e-12 74.3 83 42.2
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 7.8e-12 73.9 85 40.0
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 7.8e-12 73.9 85 38.8
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 7.8e-12 73.9 85 41.2
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.0e-11 73.6 82 41.5
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-11 73.2 85 40.0
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.3e-11 73.2 85 40.0
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 1.3e-11 73.2 85 38.8
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 1.3e-11 73.2 83 41.0
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.7e-11 72.8 83 43.4
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 1.7e-11 72.8 85 40.0
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.3e-11 72.4 83 39.8
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 2.3e-11 72.4 85 38.8
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 3.0e-11 72.0 85 38.8
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.0e-11 72.0 82 41.5
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 3.0e-11 72.0 82 40.2
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.9e-11 71.6 83 38.6
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 3.9e-11 71.6 77 45.5
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 5.0e-11 71.2 85 38.8
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 5.0e-11 71.2 83 42.2
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 5.0e-11 71.2 82 41.5
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 6.6e-11 70.9 85 37.6
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 8.6e-11 70.5 85 38.8
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 8.6e-11 70.5 83 39.8
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 8.6e-11 70.5 85 38.8
CBR_g50842 Chara braunii HOM05D004945 ORTHO05D005536 1.1e-10 70.1 84 41.7
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.1e-10 70.1 85 40.0
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 1.1e-10 70.1 85 40.0
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 1.5e-10 69.7 85 38.8
MCO09G227 Micromonas commoda HOM05D004945 ORTHO05D005536 1.5e-10 69.7 73 42.5
Pp3c25_5460 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.5e-10 69.7 77 40.3
Pp3c25_5480 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.5e-10 69.7 77 40.3
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 1.9e-10 69.3 85 36.5
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.9e-10 69.3 83 37.3
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.9e-10 69.3 83 39.8
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.9e-10 69.3 83 37.3
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 2.5e-10 68.9 83 38.6
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 2.5e-10 68.9 85 36.5
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 2.5e-10 68.9 82 40.2
Mapoly0011s0061 Marchantia polymorpha HOM05D004945 ORTHO05D005536 2.5e-10 68.9 81 43.2
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 2.5e-10 68.9 83 39.8
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 2.5e-10 68.9 80 41.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 2.5e-10 68.9 83 37.3
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 3.3e-10 68.6 86 36.0
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 3.3e-10 68.6 83 36.1
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 3.3e-10 68.6 83 38.6
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-10 68.2 83 37.3
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-10 68.2 83 37.3
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-10 68.2 83 37.3
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 4.3e-10 68.2 83 37.3
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.3e-10 68.2 81 40.7
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 5.6e-10 67.8 82 39.0
AagrBONN_evm.TU.Sc2ySwM_344.4974 Anthoceros agrestis HOM05D004945 ORTHO05D005536 7.3e-10 67.4 89 36.0
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 1.2e-09 66.6 83 36.1
Pp3c5_15650 Physcomitrium patens HOM05D004945 ORTHO05D005536 1.6e-09 66.2 77 37.7
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 1.6e-09 66.2 82 40.2
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 2.8e-09 65.5 85 37.6
AagrBONN_evm.TU.Sc2ySwM_228.1937 Anthoceros agrestis HOM05D004945 ORTHO05D005536 3.6e-09 65.1 83 37.3
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 3.6e-09 65.1 80 37.5
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 4.7e-09 64.7 83 39.8
Pp3c5_15280 Physcomitrium patens HOM05D004945 ORTHO05D005536 6.2e-09 64.3 84 34.5
AagrBONN_evm.TU.Sc2ySwM_344.1844 Anthoceros agrestis HOM05D053501 ORTHO05D005536 6.8e-08 60.8 90 41.1
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.2e-07 60.1 62 45.2
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 5.8e-07 57.8 86 32.6
HanXRQChr15g0497481 Helianthus annuus HOM05D004945 ORTHO05D005536 5.8e-07 57.8 57 47.4
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 2.2e-06 55.8 74 37.8
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 2.9e-06 55.5 61 41.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 3.7e-06 55.1 46 47.8
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 4.9e-06 54.7 46 45.7


User provided reference genes

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