Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0711 Selaginella moellendorffii HOM05D000540 ORTHO05D008105 5.4e-50 200.7 100 100.0
Hund07747 Selenicereus undatus HOM05D000540 ORTHO05D008105 7.9e-17 90.5 92 52.2
Ah.08g216160 Amaranthus hybridus HOM05D000540 ORTHO05D008105 2.3e-16 89.0 101 49.5
Mapoly0157s0025 Marchantia polymorpha HOM05D000540 ORTHO05D008105 5.1e-16 87.8 77 59.7
Zm00001eb003570 Zea mays HOM05D000540 ORTHO05D008105 5.1e-16 87.8 91 52.7
Zm00001eb049250 Zea mays HOM05D000540 ORTHO05D008105 5.1e-16 87.8 91 52.7
Zm00001eb219510 Zea mays HOM05D000540 ORTHO05D008105 6.7e-16 87.4 92 52.2
Zm00001eb321850 Zea mays HOM05D000540 ORTHO05D008105 1.9e-15 85.9 92 51.1
Zm00001eb321840 Zea mays HOM05D000540 ORTHO05D008105 2.5e-15 85.5 92 51.1
Eucgr.D00430 Eucalyptus grandis HOM05D000540 ORTHO05D008105 3.3e-15 85.1 88 52.3
CsaV3_2G032570 Cucumis sativus L. HOM05D000540 ORTHO05D008105 7.4e-15 84.0 93 50.5
AagrBONN_evm.TU.Sc2ySwM_117.3450 Anthoceros agrestis HOM05D000540 ORTHO05D008105 1.3e-14 83.2 71 54.9
AagrBONN_evm.TU.Sc2ySwM_228.180 Anthoceros agrestis HOM05D000540 ORTHO05D008105 2.8e-14 82.0 71 54.9
AT5G47320 Arabidopsis thaliana HOM05D000540 ORTHO05D008105 2.8e-14 82.0 81 54.3
MELO3C011310.2 Cucumis melo HOM05D000540 ORTHO05D008105 2.8e-14 82.0 91 48.4
AL8G10730 Arabidopsis lyrata HOM05D000540 ORTHO05D008105 3.7e-14 81.6 81 54.3
Carub.0008s0045 Capsella rubella HOM05D000540 ORTHO05D008105 3.7e-14 81.6 81 54.3
Sc06g0008940 Simmondsia chinensis HOM05D000540 ORTHO05D008105 3.7e-14 81.6 92 47.8
Gohir.A03G217200 Gossypium hirsutum HOM05D000540 ORTHO05D008105 6.2e-14 80.9 84 54.8
Gohir.D02G238800 Gossypium hirsutum HOM05D000540 ORTHO05D008105 6.2e-14 80.9 76 56.6
Gorai.005G267300 Gossypium raimondii HOM05D000540 ORTHO05D008105 6.2e-14 80.9 76 56.6
DCAR_015262 Daucus carota HOM05D000540 ORTHO05D008105 1.1e-13 80.1 75 56.0
BcaB04g20419 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BcaB06g26544 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BcaC06g35575 Brassica carinata HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
A01p31250 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
A07p08550 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
C07p13360 Brassica napus HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BolC1t03932H Brassica oleracea HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BolC7t41830H Brassica oleracea HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BraA01t03249Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BraA03t13476Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
BraA07t28644Z Brassica rapa HOM05D000540 ORTHO05D008105 1.8e-13 79.3 75 56.0
Thecc.02G009100 Theobroma cacao HOM05D000540 ORTHO05D008105 2.4e-13 79.0 84 54.8
A03p43380 Brassica napus HOM05D000540 ORTHO05D008105 3.1e-13 78.6 72 56.9
Thhalv10002665m.g Eutrema salsugineum HOM05D000540 ORTHO05D008105 3.1e-13 78.6 72 56.9
Sp3g21530 Schrenkiella parvula HOM05D000540 ORTHO05D008105 3.1e-13 78.6 72 56.9
Atru.chr1.3246 Acer truncatum HOM05D000540 ORTHO05D008105 4.0e-13 78.2 98 48.0
Atru.chr7.1082 Acer truncatum HOM05D000540 ORTHO05D008105 4.0e-13 78.2 98 48.0
BcaC01g03363 Brassica carinata HOM05D000540 ORTHO05D008105 4.0e-13 78.2 72 56.9
BolC3t17591H Brassica oleracea HOM05D000540 ORTHO05D008105 4.0e-13 78.2 72 56.9
Ciclev10002977m.g Citrus clementina HOM05D000540 ORTHO05D008105 4.0e-13 78.2 77 50.6
C01p39820 Brassica napus HOM05D000540 ORTHO05D008105 9.0e-13 77.0 75 54.7
C03p53300 Brassica napus HOM05D000540 ORTHO05D008105 9.0e-13 77.0 72 55.6
Manes.07G029100 Manihot esculenta HOM05D000540 ORTHO05D008105 1.2e-12 76.6 85 50.6
CANSAT16G0016 Cannabis sativa HOM05D000540 ORTHO05D008105 2.6e-12 75.5 98 46.9
Sp7g05780 Schrenkiella parvula HOM05D000540 ORTHO05D008105 2.6e-12 75.5 75 53.3
Aa31LG8G10410 Aethionema arabicum HOM05D000540 ORTHO05D008105 4.5e-12 74.7 72 54.2
CiPaw.04G013600 Carya illinoinensis HOM05D002804 ORTHO05D003755 4.5e-12 74.7 89 44.9
FAN18G3733 Fragaria x ananassa HOM05D000540 ORTHO05D008105 4.5e-12 74.7 79 51.9
FvH4_5g23230 Fragaria vesca HOM05D000540 ORTHO05D008105 5.8e-12 74.3 90 48.9
FAN04G1833 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.8e-12 74.3 90 48.9
FAN18G0695 Fragaria x ananassa HOM05D000540 ORTHO05D008105 5.8e-12 74.3 90 48.9
Nn1g09992 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-12 74.3 98 46.9
Nn1g10001 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-12 74.3 98 46.9
Nn1g10092 Nelumbo nucifera HOM05D000540 ORTHO05D008105 5.8e-12 74.3 98 46.9
RcHm_v2.0_Chr7g0212161 Rosa chinensis HOM05D000540 ORTHO05D008105 5.8e-12 74.3 90 48.9
Prupe.2G123500 Prunus persica HOM05D000540 ORTHO05D008105 7.6e-12 73.9 97 47.4
Solyc00g500273.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.0e-11 73.6 98 46.9
PGSC0003DMG400021035 Solanum tuberosum HOM05D000540 ORTHO05D008105 1.0e-11 73.6 98 46.9
GSVIVG01038017001 Vitis vinifera HOM05D000540 ORTHO05D008105 1.0e-11 73.6 98 48.0
Haze_26884 Corylus avellana HOM05D000540 ORTHO05D000681 1.3e-11 73.2 76 52.6
Cfa009693 Carpinus fangiana HOM05D002804 ORTHO05D003755 1.7e-11 72.8 89 44.9
FAN08G1475 Fragaria x ananassa HOM05D000540 ORTHO05D008105 1.7e-11 72.8 90 47.8
Lj2A1229G102 Lonicera japonica HOM05D000540 ORTHO05D000681 1.7e-11 72.8 98 45.9
MD02G1217700 Malus domestica HOM05D000540 ORTHO05D008105 1.7e-11 72.8 97 46.4
Potri.013G129600 Populus trichocarpa HOM05D000540 ORTHO05D008105 1.7e-11 72.8 68 52.9
Solyc00g500245.1 Solanum lycopersicum HOM05D001987 ORTHO05D006514 1.7e-11 72.8 101 45.5
MD07G1100000 Malus domestica HOM05D000540 ORTHO05D008105 2.2e-11 72.4 97 46.4
Haze_23044 Corylus avellana HOM05D004763 ORTHO05D007492 2.9e-11 72.0 89 44.9
Lalb_Chr10g0097221 Lupinus albus HOM05D000540 ORTHO05D008105 3.8e-11 71.6 74 52.7
Nitab4.5_0011987g0020 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.8e-11 71.6 98 45.9
Pp3c3_35760 Physcomitrium patens HOM05D024141 ORTHO05D008105 8.4e-11 70.5 68 57.4
Medtr5g085270 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-10 69.7 56 60.7
Medtr7g106780 Medicago truncatula HOM05D000540 ORTHO05D008105 1.4e-10 69.7 55 61.8
Sabra13G0107600 Salix brachista HOM05D000540 ORTHO05D008105 1.9e-10 69.3 96 44.8
VMungo1383G2423 Vigna mungo HOM05D001610 ORTHO05D001585 2.5e-10 68.9 66 56.1
Nitab4.5_0001153g0100 Nicotiana tabacum HOM05D000540 ORTHO05D008105 3.2e-10 68.6 105 41.9
arahy.Tifrunner.gnm1.ann1.3CPC1Y Arachis hypogaea HOM05D000540 ORTHO05D008105 4.2e-10 68.2 67 52.2
arahy.Tifrunner.gnm1.ann1.WZXK6X Arachis hypogaea HOM05D000540 ORTHO05D008105 4.2e-10 68.2 67 52.2
Mapoly0010s0113 Marchantia polymorpha HOM05D024141 ORTHO05D008105 5.5e-10 67.8 51 64.7
Glyma.05G150000 Glycine max HOM05D000540 ORTHO05D008105 7.1e-10 67.4 65 55.4
Lj3g0015602 Lotus japonicus HOM05D000540 ORTHO05D008105 9.3e-10 67.0 57 59.6
Ca_09077_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.2e-09 66.6 50 66.0
Ca_22805_v3 Cicer arietinum L. HOM05D000540 ORTHO05D008105 1.2e-09 66.6 50 66.0
Medtr8g466190 Medicago truncatula HOM05D000540 ORTHO05D008105 1.2e-09 66.6 65 53.8
TPR.G25660 Trifolium pratense HOM05D000540 ORTHO05D008105 1.2e-09 66.6 50 66.0
TPR.G34443 Trifolium pratense HOM05D000540 ORTHO05D008105 1.2e-09 66.6 50 66.0
Phvul.001G167500 Phaseolus vulgaris HOM05D000540 ORTHO05D008105 1.6e-09 66.2 69 50.7
Glyma.08G106800 Glycine max HOM05D000540 ORTHO05D008105 2.1e-09 65.9 59 59.3
Rhsim11G0036800 Rhododendron simsii HOM05D000540 ORTHO05D008105 2.1e-09 65.9 75 52.0
Solyc05g045820.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.7e-09 65.5 48 62.5
Nitab4.5_0009703g0070 Nicotiana tabacum HOM05D000540 ORTHO05D008105 1.3e-08 63.2 69 53.6
Solyc05g045760.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 2.3e-08 62.4 57 52.6
Cre08.g375250 Chlamydomonas reinhardtii HOM05D000540 ORTHO05D009557 1.1e-07 60.1 116 37.9
Solyc12g035810.1 Solanum lycopersicum HOM05D000540 ORTHO05D008105 1.1e-07 60.1 58 53.4
Medtr3g035720 Medicago truncatula HOM05D000540 ORTHO05D009557 4.3e-07 58.2 90 38.9
Medtr4g051420 Medicago truncatula HOM05D000540 ORTHO05D009557 4.3e-07 58.2 90 38.9
DCAR_032526 Daucus carota HOM05D000540 ORTHO05D009557 7.4e-07 57.4 90 37.8
Hma1.2p1_0192F.1_g083730 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 37.8
Hma1.2p1_0247F.1_g101832 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 37.8
Hma1.2p1_0298F.1_g117734 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 37.8
Hma1.2p1_0818F.1_g223303 Hydrangea macrophylla HOM05D000540 ORTHO05D009557 1.6e-06 56.2 90 37.8
Gohir.A02G076002 Gossypium hirsutum HOM05D000540 ORTHO05D009557 2.8e-06 55.5 57 49.1
Peaxi162Scf00299g00117 Petunia axillaris HOM05D000540 ORTHO05D009557 2.8e-06 55.5 59 45.8
Potri.019G101950 Populus trichocarpa HOM05D000540 ORTHO05D008105 2.8e-06 55.5 46 60.9
ClCG11G008150 Citrullus lanatus HOM05D000540 ORTHO05D008105 3.7e-06 55.1 64 43.8
Lsat_1_v5_gn_5_185760 Lactuca sativa HOM05D000540 ORTHO05D009557 3.7e-06 55.1 61 45.9
PSO548G0068 Papaver somniferum HOM05D000540 ORTHO05D009557 3.7e-06 55.1 92 38.0
Aqoxy3G00098 Aquilegia oxysepala HOM05D000540 ORTHO05D009557 4.8e-06 54.7 71 39.4
Nitab4.5_0001783g0160 Nicotiana tabacum HOM05D000540 ORTHO05D009557 4.8e-06 54.7 50 48.0
Gohir.D06G105033 Gossypium hirsutum HOM05D000540 ORTHO05D009557 6.2e-06 54.3 44 56.8
HanXRQChr10g0318011 Helianthus annuus HOM05D000540 ORTHO05D009557 6.2e-06 54.3 59 47.5
Lsat_1_v5_gn_0_41560 Lactuca sativa HOM05D000540 ORTHO05D000681 6.2e-06 54.3 59 47.5
Lsat_1_v5_gn_3_22600 Lactuca sativa HOM05D000540 ORTHO05D000681 6.2e-06 54.3 59 47.5
arahy.Tifrunner.gnm1.ann1.YHR3P6 Arachis hypogaea HOM05D000540 ORTHO05D009557 8.2e-06 53.9 59 42.4
ECA236G4531 Erigeron canadensis HOM05D000540 ORTHO05D009557 8.2e-06 53.9 61 44.3
MBI12_g26681_MAGBIO Magnolia biondii HOM05D002578 ORTHO05D009557 8.2e-06 53.9 63 49.2
PGR111G0101 Punica granatum HOM05D000540 ORTHO05D009557 8.2e-06 53.9 90 36.7


User provided reference genes

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