Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.3e-110 402.1 192 100.0
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 2.2e-23 113.2 141 40.4
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 8.3e-23 111.3 138 38.4
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.1e-22 110.9 144 39.6
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 1.4e-22 110.5 141 41.1
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 5.4e-22 108.6 178 32.6
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 5.4e-22 108.6 139 42.4
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 9.1e-22 107.8 138 37.7
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 9.1e-22 107.8 139 37.4
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 1.6e-21 107.1 141 37.6
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 2.0e-21 106.7 139 36.0
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 2.0e-21 106.7 141 39.7
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 3.5e-21 105.9 177 36.7
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 4.5e-21 105.5 144 38.2
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 4.5e-21 105.5 141 40.4
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 7.7e-21 104.8 141 37.6
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.0e-20 104.4 138 37.7
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.3e-20 104.0 140 38.6
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 1.7e-20 103.6 138 37.7
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 2.3e-20 103.2 141 38.3
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 2.9e-20 102.8 143 38.5
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 3.8e-20 102.4 134 35.8
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 5.0e-20 102.1 182 34.6
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 5.0e-20 102.1 139 43.9
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 5.0e-20 102.1 141 38.3
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 8.6e-20 101.3 139 42.4
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 8.6e-20 101.3 130 43.1
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 1.1e-19 100.9 140 40.0
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 1.1e-19 100.9 143 37.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 1.5e-19 100.5 140 38.6
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.5e-19 100.5 138 39.1
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.9e-19 100.1 139 40.3
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 2.5e-19 99.8 134 30.6
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 4.2e-19 99.0 140 40.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 4.2e-19 99.0 123 37.4
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 5.5e-19 98.6 135 37.8
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 7.2e-19 98.2 141 38.3
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 7.2e-19 98.2 148 33.8
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 1.2e-18 97.4 181 33.7
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.2e-18 97.4 140 37.9
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 1.6e-18 97.1 139 36.7
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.6e-18 97.1 140 37.9
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 2.8e-18 96.3 129 41.1
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 3.6e-18 95.9 145 37.2
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 4.7e-18 95.5 176 34.1
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 4.7e-18 95.5 137 38.7
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 6.1e-18 95.1 171 32.7
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 1.0e-17 94.4 155 36.8
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.0e-17 94.4 139 33.1
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 1.0e-17 94.4 129 37.2
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.4e-17 94.0 140 39.3
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 2.3e-17 93.2 144 36.1
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 2.3e-17 93.2 144 36.1
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 2.3e-17 93.2 144 36.1
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 2.3e-17 93.2 141 38.3
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 3.0e-17 92.8 134 38.1
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 4.0e-17 92.4 140 40.0
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 4.0e-17 92.4 138 34.1
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 5.2e-17 92.0 180 32.8
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 5.2e-17 92.0 139 36.0
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 5.2e-17 92.0 139 36.0
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 5.2e-17 92.0 160 32.5
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 5.2e-17 92.0 140 36.4
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 5.2e-17 92.0 131 38.9
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 8.9e-17 91.3 136 36.0
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 8.9e-17 91.3 141 36.2
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 8.9e-17 91.3 141 36.2
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 1.2e-16 90.9 144 36.1
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 1.2e-16 90.9 144 36.1
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.5e-16 90.5 116 41.4
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 1.5e-16 90.5 143 32.2
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 2.0e-16 90.1 138 37.0
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.0e-16 90.1 135 36.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 2.6e-16 89.7 143 33.6
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 3.4e-16 89.4 137 37.2
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 7.5e-16 88.2 136 36.8
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 9.8e-16 87.8 140 35.0
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 9.8e-16 87.8 136 35.3
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.3e-15 87.4 144 37.5
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 1.3e-15 87.4 74 50.0
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.7e-15 87.0 140 32.1
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 1.7e-15 87.0 129 35.7
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-15 87.0 136 34.6
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.7e-15 87.0 138 33.3
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 2.8e-15 86.3 140 32.1
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 2.8e-15 86.3 142 35.9
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 4.9e-15 85.5 143 34.3
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 4.9e-15 85.5 132 38.6
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 4.9e-15 85.5 119 39.5
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 4.9e-15 85.5 140 35.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 6.3e-15 85.1 140 32.1
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 6.3e-15 85.1 133 36.1
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 8.3e-15 84.7 138 32.6
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 8.3e-15 84.7 163 33.1
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 1.4e-14 84.0 141 35.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 1.4e-14 84.0 131 35.1
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 1.8e-14 83.6 97 42.3
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.4e-14 83.2 133 38.3
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.4e-14 83.2 133 38.3
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 2.4e-14 83.2 142 35.2
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.4e-14 83.2 143 35.0
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 2.4e-14 83.2 134 35.1
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 2.4e-14 83.2 131 35.1
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.4e-14 83.2 107 37.4
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 3.1e-14 82.8 130 35.4
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 5.4e-14 82.0 98 38.8
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 7.0e-14 81.6 145 33.8
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 7.0e-14 81.6 145 33.8
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 9.2e-14 81.3 121 38.0
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 9.2e-14 81.3 137 27.7
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.2e-13 80.9 188 31.4
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 3.5e-13 79.3 130 34.6
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 3.5e-13 79.3 129 31.8
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 5.9e-13 78.6 154 36.4
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 5.9e-13 78.6 151 32.5
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 5.9e-13 78.6 123 37.4
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 1.3e-12 77.4 173 31.2
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 2.3e-12 76.6 137 29.2
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 2.3e-12 76.6 121 33.9
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 5.0e-12 75.5 74 44.6
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 8.6e-12 74.7 139 33.8
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 1.9e-11 73.6 99 36.4
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.9e-11 73.6 141 31.2
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 1.9e-11 73.6 139 33.8
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.9e-11 73.6 135 34.8
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 1.9e-11 73.6 131 31.3
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 2.5e-11 73.2 94 36.2
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 3.3e-11 72.8 137 33.6
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 3.3e-11 72.8 137 33.6
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 3.3e-11 72.8 64 50.0
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 4.3e-11 72.4 117 35.9
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 5.6e-11 72.0 197 28.4
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 9.5e-11 71.2 167 31.7
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.1e-10 68.6 130 29.2
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.3e-09 66.6 76 44.7
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 6.4e-07 58.5 95 32.6


User provided reference genes

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