Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 5.3e-37 157.1 78 100.0
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.6e-25 117.9 78 79.5
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 8.0e-25 116.7 68 85.3
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 8.0e-25 116.7 78 75.6
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 8.0e-25 116.7 78 75.6
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 1.0e-24 116.3 78 76.9
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 1.0e-24 116.3 78 76.9
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.4e-24 115.9 78 75.6
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.4e-24 115.9 78 75.6
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.8e-24 115.5 78 76.9
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 1.8e-24 115.5 78 75.6
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.8e-24 115.5 78 75.6
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 1.8e-24 115.5 78 75.6
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 3.0e-24 114.8 78 75.6
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 3.0e-24 114.8 78 75.6
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.0e-24 114.8 78 75.6
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.0e-24 114.8 78 75.6
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 3.0e-24 114.8 78 75.6
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 4.0e-24 114.4 78 75.6
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 5.2e-24 114.0 72 80.6
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 5.2e-24 114.0 78 74.4
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 5.2e-24 114.0 78 74.4
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 5.2e-24 114.0 78 74.4
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.2e-24 114.0 72 80.6
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 5.2e-24 114.0 78 75.6
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 6.8e-24 113.6 78 74.4
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 6.8e-24 113.6 78 74.4
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.8e-24 113.2 78 75.6
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 8.8e-24 113.2 78 75.6
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 8.8e-24 113.2 78 75.6
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 8.8e-24 113.2 78 75.6
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 8.8e-24 113.2 76 76.3
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 1.2e-23 112.8 70 81.4
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 1.2e-23 112.8 78 75.6
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.2e-23 112.8 78 74.4
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 1.2e-23 112.8 78 74.4
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.5e-23 112.5 74 78.4
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.5e-23 112.5 74 78.4
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 1.5e-23 112.5 78 75.6
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 1.5e-23 112.5 78 73.1
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.0e-23 112.1 78 73.1
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 2.0e-23 112.1 78 74.4
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.0e-23 112.1 78 74.4
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 2.0e-23 112.1 78 74.4
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.0e-23 112.1 78 74.4
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 2.0e-23 112.1 78 74.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 2.6e-23 111.7 78 70.5
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 2.6e-23 111.7 76 75.0
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 3.4e-23 111.3 78 73.1
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 3.4e-23 111.3 78 71.8
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 3.4e-23 111.3 79 73.4
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 73.1
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 73.1
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 4.4e-23 110.9 72 79.2
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 74.4
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 4.4e-23 110.9 76 75.0
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 71.8
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 73.1
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 73.1
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 4.4e-23 110.9 78 73.1
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 5.7e-23 110.5 78 74.4
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 5.7e-23 110.5 78 73.1
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 5.7e-23 110.5 69 81.2
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 7.5e-23 110.2 72 76.4
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 7.5e-23 110.2 79 75.9
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 7.5e-23 110.2 78 73.1
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 7.5e-23 110.2 78 74.4
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 7.5e-23 110.2 69 79.7
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 9.8e-23 109.8 72 76.4
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 9.8e-23 109.8 76 75.0
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 1.3e-22 109.4 74 75.7
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 1.3e-22 109.4 76 73.7
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 1.3e-22 109.4 78 71.8
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.3e-22 109.4 78 71.8
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 1.3e-22 109.4 69 79.7
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 1.7e-22 109.0 78 71.8
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 1.7e-22 109.0 72 76.4
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.7e-22 109.0 72 76.4
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 1.7e-22 109.0 72 76.4
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 1.7e-22 109.0 72 75.0
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.7e-22 109.0 78 71.8
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 1.7e-22 109.0 78 71.8
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.7e-22 109.0 76 75.0
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 2.2e-22 108.6 73 79.5
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 2.2e-22 108.6 78 71.8
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 2.8e-22 108.2 78 70.5
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 2.8e-22 108.2 71 78.9
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 2.8e-22 108.2 78 71.8
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 2.8e-22 108.2 72 76.4
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 3.7e-22 107.8 76 73.7
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 3.7e-22 107.8 76 73.7
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 3.7e-22 107.8 79 73.4
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.7e-22 107.8 78 73.1
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 4.9e-22 107.5 69 79.7
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 4.9e-22 107.5 69 79.7
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 6.3e-22 107.1 78 70.5
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 6.3e-22 107.1 79 73.4
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 6.3e-22 107.1 78 71.8
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 6.3e-22 107.1 78 71.8
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 6.3e-22 107.1 78 71.8
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 8.3e-22 106.7 79 73.4
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 1.1e-21 106.3 79 70.9
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 1.1e-21 106.3 79 70.9
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 1.1e-21 106.3 79 70.9
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 1.4e-21 105.9 69 78.3
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 1.8e-21 105.5 72 75.0
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 1.8e-21 105.5 66 81.8
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.4e-21 105.1 72 75.0
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 3.1e-21 104.8 79 70.9
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 3.1e-21 104.8 79 70.9
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 3.1e-21 104.8 79 70.9
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 3.1e-21 104.8 79 70.9
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 3.1e-21 104.8 79 70.9
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 3.1e-21 104.8 78 71.8
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 3.1e-21 104.8 78 70.5
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 4.1e-21 104.4 79 70.9
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 4.1e-21 104.4 78 69.2
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 7.0e-21 103.6 68 76.5
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 1.2e-20 102.8 78 67.9
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.0e-20 102.1 66 80.3
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 2.0e-20 102.1 75 70.7
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 2.0e-20 102.1 75 70.7
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 3.5e-20 101.3 78 67.9
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 4.5e-20 100.9 79 72.2
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 7.7e-20 100.1 70 67.1
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 7.7e-20 100.1 78 70.5
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.0e-19 99.8 79 70.9
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 1.7e-19 99.0 62 79.0
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 6.6e-19 97.1 80 70.0
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 4.9e-14 80.9 80 57.5
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.4e-13 77.4 52 76.9
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 9.2e-13 76.6 51 78.4
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 1.9e-10 68.9 73 52.1
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.3e-08 62.0 43 69.8
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 2.3e-08 62.0 47 68.1


User provided reference genes

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