Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0372 Selaginella moellendorffii HOM05D002623 ORTHO05D002826 2.0e-19 98.2 53 100.0
AagrBONN_evm.TU.Sc2ySwM_117.3726 Anthoceros agrestis HOM05D002623 ORTHO05D002826 9.6e-14 79.3 52 82.7
Aa31LG10G9100 Aethionema arabicum HOM05D002623 ORTHO05D002826 2.4e-09 64.7 50 68.0
CARHR161440 Cardamine hirsuta HOM05D002623 ORTHO05D002826 7.1e-09 63.2 50 66.0
CBR_g12204 Chara braunii HOM05D002623 ORTHO05D002826 7.1e-09 63.2 52 61.5
Glyma.18G203500 Glycine max HOM05D002623 ORTHO05D002826 7.1e-09 63.2 51 64.7
VMungo1383G0374 Vigna mungo HOM05D002623 ORTHO05D002826 7.1e-09 63.2 51 64.7
Aqoxy2G00846 Aquilegia oxysepala HOM05D002623 ORTHO05D002826 9.3e-09 62.8 47 72.3
Carub.0005s1816 Capsella rubella HOM05D002623 ORTHO05D002826 1.2e-08 62.4 47 68.1
Manes.10G010700 Manihot esculenta HOM05D002623 ORTHO05D002826 2.1e-08 61.6 52 63.5
TAR636G2478 Trochodendron aralioides HOM05D002623 ORTHO05D002826 2.1e-08 61.6 47 70.2
Phvul.008G096400 Phaseolus vulgaris HOM05D002623 ORTHO05D002826 2.7e-08 61.2 51 62.7
AUR62030479 Chenopodium quinoa HOM05D002623 ORTHO05D002826 3.5e-08 60.8 50 66.0
arahy.Tifrunner.gnm1.ann1.74MQIJ Arachis hypogaea HOM05D002623 ORTHO05D002826 4.6e-08 60.5 48 64.6
arahy.Tifrunner.gnm1.ann1.DKZE4I Arachis hypogaea HOM05D002623 ORTHO05D002826 4.6e-08 60.5 48 64.6
arahy.Tifrunner.gnm1.ann1.XH9UDA Arachis hypogaea HOM05D002623 ORTHO05D002826 4.6e-08 60.5 48 64.6
Eucgr.J00194 Eucalyptus grandis HOM05D002623 ORTHO05D002826 4.6e-08 60.5 47 66.0
Peaxi162Scf00284g00813 Petunia axillaris HOM05D002623 ORTHO05D002826 4.6e-08 60.5 51 62.7
BcaC06g33009 Brassica carinata HOM05D002623 ORTHO05D002826 6.0e-08 60.1 47 66.0
BcaC09g50105 Brassica carinata HOM05D002623 ORTHO05D002826 6.0e-08 60.1 47 66.0
BcaNung00369 Brassica carinata HOM05D002623 ORTHO05D002826 6.0e-08 60.1 47 66.0
BolC1t02822H Brassica oleracea HOM05D002623 ORTHO05D002826 6.0e-08 60.1 47 66.0
Medtr4g016960 Medicago truncatula HOM05D002623 ORTHO05D002826 6.0e-08 60.1 48 62.5
Psat0s2780g0040 Pisum sativum HOM05D002623 ORTHO05D002826 6.0e-08 60.1 48 64.6
PGR142G0314 Punica granatum HOM05D002623 ORTHO05D002826 6.0e-08 60.1 46 67.4
Sp5g10460 Schrenkiella parvula HOM05D002623 ORTHO05D002826 6.0e-08 60.1 48 64.6
Eucgr.J00195 Eucalyptus grandis HOM05D002623 ORTHO05D002826 7.9e-08 59.7 44 68.2
PGSC0003DMG400006648 Solanum tuberosum HOM05D002623 ORTHO05D002826 7.9e-08 59.7 51 60.8
AT3G51810 Arabidopsis thaliana HOM05D002623 ORTHO05D002826 1.0e-07 59.3 47 66.0
Cpa.g.sc19.160 Carica papaya HOM05D002623 ORTHO05D002826 1.0e-07 59.3 49 61.2
CDE07G1692 Ceratophyllum demersum HOM05D002623 ORTHO05D002826 1.0e-07 59.3 47 68.1
CDE07G1963 Ceratophyllum demersum HOM05D002623 ORTHO05D002826 1.0e-07 59.3 47 68.1
Eucgr.G03071 Eucalyptus grandis HOM05D002623 ORTHO05D002826 1.0e-07 59.3 46 65.2
Gohir.D06G168200 Gossypium hirsutum HOM05D002623 ORTHO05D002826 1.0e-07 59.3 46 65.2
Gorai.010G196300 Gossypium raimondii HOM05D002623 ORTHO05D002826 1.0e-07 59.3 46 65.2
AL5G32270 Arabidopsis lyrata HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 63.8
arahy.Tifrunner.gnm1.ann1.1Z4Q40 Arachis hypogaea HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 63.8
Cpa.g.sc2485.2 Carica papaya HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 66.0
AUR62030818 Chenopodium quinoa HOM05D002623 ORTHO05D002826 1.3e-07 58.9 50 62.0
Ca_07010_v3 Cicer arietinum L. HOM05D002448 ORTHO05D002826 1.3e-07 58.9 47 63.8
Ca_20215_v3 Cicer arietinum L. HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 63.8
Thhalv10010923m.g Eutrema salsugineum HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 66.0
Lj3g0009747 Lotus japonicus HOM05D002623 ORTHO05D002826 1.3e-07 58.9 47 63.8
Lalb_Chr19g0124411 Lupinus albus HOM05D002623 ORTHO05D002826 1.3e-07 58.9 48 62.5
Sc01g0007780 Simmondsia chinensis HOM05D002623 ORTHO05D002826 1.3e-07 58.9 41 73.2
SGA_v2.0_scaffold110G31206 Striga asiatica HOM05D002623 ORTHO05D002826 1.3e-07 58.9 51 60.8
CAN.G479.55 Capsicum annuum HOM05D002623 ORTHO05D002826 1.8e-07 58.5 51 58.8
Sc07g0006720 Simmondsia chinensis HOM05D002623 ORTHO05D002826 1.8e-07 58.5 47 63.8
Solyc06g048840.3 Solanum lycopersicum HOM05D002623 ORTHO05D002826 1.8e-07 58.5 47 63.8
Sopen06g015130 Solanum pennellii HOM05D002623 ORTHO05D002826 1.8e-07 58.5 47 63.8
TPR.G14315 Trifolium pratense HOM05D002623 ORTHO05D002826 1.8e-07 58.5 47 63.8
BraA01t02236Z Brassica rapa HOM05D002623 ORTHO05D002826 2.3e-07 58.2 47 63.8
Nitab4.5_0000261g0150 Nicotiana tabacum HOM05D002623 ORTHO05D002826 2.3e-07 58.2 51 60.8
Psat7g244720 Pisum sativum HOM05D002623 ORTHO05D002826 2.3e-07 58.2 48 60.4
Psat7g244760 Pisum sativum HOM05D002623 ORTHO05D002826 2.3e-07 58.2 48 60.4
Ah.07g199960 Amaranthus hybridus HOM05D002623 ORTHO05D002826 3.0e-07 57.8 48 60.4
Glyma.03G056000 Glycine max HOM05D002623 ORTHO05D002826 3.0e-07 57.8 48 60.4
Nn2g10893 Nelumbo nucifera HOM05D002623 ORTHO05D002826 3.0e-07 57.8 47 66.0
Nitab4.5_0000797g0130 Nicotiana tabacum HOM05D002623 ORTHO05D002826 3.0e-07 57.8 47 61.7
PSO339G5526 Papaver somniferum HOM05D002623 ORTHO05D002826 3.0e-07 57.8 47 63.8
PSO384G4361 Papaver somniferum HOM05D002623 ORTHO05D002826 3.0e-07 57.8 47 63.8
PSO384G5020 Papaver somniferum HOM05D002623 ORTHO05D002826 3.0e-07 57.8 47 63.8
Peaxi162Scf00045g02527 Petunia axillaris HOM05D002623 ORTHO05D002826 3.0e-07 57.8 52 55.8
QL07p035070 Quercus lobata HOM05D002623 ORTHO05D002826 3.0e-07 57.8 46 67.4
Rhsim03G0144900 Rhododendron simsii HOM05D002623 ORTHO05D002826 3.0e-07 57.8 52 59.6
EL10Ac5g12539 Beta vulgaris HOM05D002623 ORTHO05D002826 3.9e-07 57.4 47 61.7
Cc06_g01110 Coffea canephora HOM05D002623 ORTHO05D002826 3.9e-07 57.4 50 60.0
COL.COLO4_03384 Corchorus olitorius HOM05D002623 ORTHO05D002826 3.9e-07 57.4 45 66.7
HanXRQChr13g0406571 Helianthus annuus HOM05D002623 ORTHO05D002826 3.9e-07 57.4 47 63.8
Lj8A64T52 Lonicera japonica HOM05D002623 ORTHO05D002826 3.9e-07 57.4 50 60.0
Lj1g0003767 Lotus japonicus HOM05D002623 ORTHO05D002826 3.9e-07 57.4 51 60.8
Nitab4.5_0015439g0010 Nicotiana tabacum HOM05D002623 ORTHO05D002826 3.9e-07 57.4 47 61.7
Oeu059464.1 Olea europaea HOM05D002623 ORTHO05D002826 3.9e-07 57.4 49 61.2
TWI74G0213 Tripterygium wilfordii HOM05D002623 ORTHO05D002826 3.9e-07 57.4 42 71.4
arahy.Tifrunner.gnm1.ann1.D0LYHK Arachis hypogaea HOM05D002623 ORTHO05D002826 5.1e-07 57.0 47 59.6
AUR62007217 Chenopodium quinoa HOM05D002623 ORTHO05D002826 5.1e-07 57.0 51 56.9
Ciclev10013756m.g Citrus clementina HOM05D002623 ORTHO05D002826 5.1e-07 57.0 47 63.8
Dinv10610 Davidia involucrata HOM05D002623 ORTHO05D002826 5.1e-07 57.0 47 63.8
Duzib128G1868 Durio zibethinus HOM05D002623 ORTHO05D002826 5.1e-07 57.0 46 65.2
Gohir.A09G166300 Gossypium hirsutum HOM05D002623 ORTHO05D002826 5.1e-07 57.0 39 76.9
Gohir.D09G161900 Gossypium hirsutum HOM05D002623 ORTHO05D002826 5.1e-07 57.0 39 76.9
Gorai.006G183600 Gossypium raimondii HOM05D002623 ORTHO05D002826 5.1e-07 57.0 39 76.9
Nitab4.5_0006808g0010 Nicotiana tabacum HOM05D002623 ORTHO05D002826 5.1e-07 57.0 47 63.8
PSO384G0535 Papaver somniferum HOM05D002623 ORTHO05D002826 5.1e-07 57.0 51 54.9
THA.LOC104824322 Tarenaya hassleriana HOM05D002623 ORTHO05D002826 5.1e-07 57.0 47 61.7
Actinidia33918 Actinidia chinensis HOM05D002623 ORTHO05D002826 6.7e-07 56.6 53 56.6
ATR0681G119 Amborella trichopoda HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 61.7
CANSAT35G1254 Cannabis sativa HOM05D002623 ORTHO05D002826 6.7e-07 56.6 46 65.2
DCAR_011825 Daucus carota HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 63.8
Gohir.A06G162700 Gossypium hirsutum HOM05D002623 ORTHO05D002826 6.7e-07 56.6 46 60.9
PSO339G1057 Papaver somniferum HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 61.7
PSO339G2037 Papaver somniferum HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 61.7
Potri.010G187100 Populus trichocarpa HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 63.8
SHI18080 Sapria himalayana HOM05D002623 ORTHO05D002826 6.7e-07 56.6 46 65.2
VMungo0331G0699 Vigna mungo HOM05D002623 ORTHO05D002826 6.7e-07 56.6 48 58.3
Zm00001eb286170 Zea mays HOM05D002623 ORTHO05D002826 6.7e-07 56.6 47 59.6
arahy.Tifrunner.gnm1.ann1.32NLQV Arachis hypogaea HOM05D002623 ORTHO05D002826 8.7e-07 56.2 47 61.7
Haze_17241 Corylus avellana HOM05D002623 ORTHO05D002826 8.7e-07 56.2 52 57.7
MELO3C026001.2 Cucumis melo HOM05D002623 ORTHO05D002826 8.7e-07 56.2 52 57.7
DCAR_024819 Daucus carota HOM05D002623 ORTHO05D002826 8.7e-07 56.2 46 63.0
Migut.F01409 Erythranthe guttata HOM05D002623 ORTHO05D002826 8.7e-07 56.2 47 61.7
Manes.09G106800 Manihot esculenta HOM05D002623 ORTHO05D002826 8.7e-07 56.2 47 61.7
Os05g0349800 Oryza sativa ssp. japonica HOM05D002623 ORTHO05D002826 8.7e-07 56.2 50 58.0
Phvul.010G075000 Phaseolus vulgaris HOM05D002623 ORTHO05D002826 8.7e-07 56.2 52 53.8
Prupe.6G280200 Prunus persica HOM05D002623 ORTHO05D002826 8.7e-07 56.2 46 63.0
Sc07g0006710 Simmondsia chinensis HOM05D002623 ORTHO05D002826 8.7e-07 56.2 46 63.0
Sc22g0001340 Simmondsia chinensis HOM05D002623 ORTHO05D002826 8.7e-07 56.2 48 62.5
Zm00001eb286150 Zea mays HOM05D002623 ORTHO05D002826 8.7e-07 56.2 47 61.7
arahy.Tifrunner.gnm1.ann1.T081CJ Arachis hypogaea HOM05D002623 ORTHO05D002826 1.1e-06 55.8 47 63.8
COL.COLO4_25761 Corchorus olitorius HOM05D002623 ORTHO05D002826 1.1e-06 55.8 47 61.7
Migut.L02028 Erythranthe guttata HOM05D002623 ORTHO05D002826 1.1e-06 55.8 51 56.9
Solyc09g014750.1 Solanum lycopersicum HOM05D002623 ORTHO05D002826 1.1e-06 55.8 51 56.9
PGSC0003DMG400008497 Solanum tuberosum HOM05D002623 ORTHO05D002826 1.1e-06 55.8 51 56.9
HPP92_012035 Vanilla planifolia HOM05D002623 ORTHO05D002826 1.1e-06 55.8 43 67.4
CAN.G350.50 Capsicum annuum HOM05D002623 ORTHO05D002826 1.5e-06 55.5 51 56.9
ClCG04G006910 Citrullus lanatus HOM05D002623 ORTHO05D002826 1.5e-06 55.5 52 57.7
Ciclev10013203m.g Citrus clementina HOM05D002623 ORTHO05D002826 1.5e-06 55.5 50 58.0
ECA238G2208 Erigeron canadensis HOM05D002623 ORTHO05D002826 1.5e-06 55.5 50 56.0
PSO339G4395 Papaver somniferum HOM05D002623 ORTHO05D002826 1.5e-06 55.5 51 54.9
SMO358G0198 Selaginella moellendorffii HOM05D002623 ORTHO05D002826 1.5e-06 55.5 47 61.7
Sopen09g007600 Solanum pennellii HOM05D002623 ORTHO05D002826 1.5e-06 55.5 52 59.6
THA.LOC104810109 Tarenaya hassleriana HOM05D002623 ORTHO05D002826 1.5e-06 55.5 46 63.0
CANSAT35G2001 Cannabis sativa HOM05D002623 ORTHO05D002826 1.9e-06 55.1 46 60.9
Haze_21026 Corylus avellana HOM05D002623 ORTHO05D002826 1.9e-06 55.1 46 60.9
CsaV3_4G026350 Cucumis sativus L. HOM05D002623 ORTHO05D002826 1.9e-06 55.1 52 57.7
Glyma.01G119600 Glycine max HOM05D002623 ORTHO05D002826 1.9e-06 55.1 48 56.2
Lsat_1_v5_gn_2_124221 Lactuca sativa HOM05D002623 ORTHO05D002826 1.9e-06 55.1 50 58.0
Lsat_1_v5_gn_5_150761 Lactuca sativa HOM05D002623 ORTHO05D002826 1.9e-06 55.1 47 59.6
Oeu048272.1 Olea europaea HOM05D002623 ORTHO05D002826 1.9e-06 55.1 47 61.7
AUR62018784 Chenopodium quinoa HOM05D002623 ORTHO05D002826 2.5e-06 54.7 51 52.9
Dinv13158 Davidia involucrata HOM05D002623 ORTHO05D002826 2.5e-06 54.7 47 61.7
Nn2g13170 Nelumbo nucifera HOM05D002623 ORTHO05D002826 2.5e-06 54.7 47 61.7
Prupe.2G252100 Prunus persica HOM05D002623 ORTHO05D002826 2.5e-06 54.7 46 60.9
Prupe.6G280300 Prunus persica HOM05D002623 ORTHO05D002826 2.5e-06 54.7 46 60.9
GSVIVG01032796001 Vitis vinifera HOM05D002623 ORTHO05D002826 2.5e-06 54.7 47 59.6
Ca_07661_v3 Cicer arietinum L. HOM05D002623 ORTHO05D002826 3.3e-06 54.3 54 57.4
FvH4_7g24640 Fragaria vesca HOM05D002623 ORTHO05D002826 3.3e-06 54.3 46 63.0
HanXRQChr13g0406581 Helianthus annuus HOM05D002623 ORTHO05D002826 3.3e-06 54.3 47 59.6
RcHm_v2.0_Chr3g0462601 Rosa chinensis HOM05D002623 ORTHO05D002826 3.3e-06 54.3 46 58.7
SEGI_05780 Sequoiadendron giganteum HOM05D002623 ORTHO05D002826 3.3e-06 54.3 47 57.4
AagrBONN_evm.TU.Sc2ySwM_228.224 Anthoceros agrestis HOM05D002623 ORTHO05D002826 4.3e-06 53.9 50 56.0
C01p28900 Brassica napus HOM05D002623 ORTHO05D002826 4.3e-06 53.9 52 59.6
Cc05_g00080 Coffea canephora HOM05D002623 ORTHO05D002826 4.3e-06 53.9 53 50.9
Lalb_Chr07g0192351 Lupinus albus HOM05D002623 ORTHO05D002826 4.3e-06 53.9 48 54.2
MD04G1121100 Malus domestica HOM05D002623 ORTHO05D002826 4.3e-06 53.9 46 58.7
Mapoly0009s0218 Marchantia polymorpha HOM05D002623 ORTHO05D002826 4.3e-06 53.9 47 61.7
RcHm_v2.0_Chr3g0462621 Rosa chinensis HOM05D002623 ORTHO05D002826 4.3e-06 53.9 46 58.7
Sed0016912 Sechium edule HOM05D002623 ORTHO05D002826 4.3e-06 53.9 46 63.0
Hund14875 Selenicereus undatus HOM05D002623 ORTHO05D002826 4.3e-06 53.9 46 63.0
SEGI_12433 Sequoiadendron giganteum HOM05D002623 ORTHO05D002826 4.3e-06 53.9 46 58.7
Aqoxy4G02497 Aquilegia oxysepala HOM05D002623 ORTHO05D002826 5.6e-06 53.5 47 59.6
arahy.Tifrunner.gnm1.ann1.J970EA Arachis hypogaea HOM05D002623 ORTHO05D002826 5.6e-06 53.5 47 59.6
Carub.0004s2238 Capsella rubella HOM05D002623 ORTHO05D002826 5.6e-06 53.5 47 55.3
CiPaw.02G193500 Carya illinoinensis HOM05D002623 ORTHO05D002826 5.6e-06 53.5 50 58.0
CiPaw.10G157800 Carya illinoinensis HOM05D002623 ORTHO05D002826 7.4e-06 53.1 39 69.2
HanXRQChr17g0552411 Helianthus annuus HOM05D002623 ORTHO05D002826 7.4e-06 53.1 50 54.0
Aa31LG5G19410 Aethionema arabicum HOM05D002623 ORTHO05D002826 9.6e-06 52.8 47 55.3
Lj3A949T21 Lonicera japonica HOM05D002623 ORTHO05D002826 9.6e-06 52.8 47 61.7
MD00G1062000 Malus domestica HOM05D002623 ORTHO05D002826 9.6e-06 52.8 46 56.5
GSVIVG01032795001 Vitis vinifera HOM05D002623 ORTHO05D002826 9.6e-06 52.8 47 57.4


User provided reference genes

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