Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 0.0e+00 1414.4 700 100.0
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 2.7e-273 945.3 693 65.9
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.3e-267 926.4 692 65.6
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 4.3e-263 911.4 691 64.1
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 9.1e-253 877.1 691 63.2
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 1.5e-252 876.3 694 61.2
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.6e-252 875.5 694 62.5
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 4.5e-252 874.8 715 60.6
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 2.2e-251 872.5 697 61.5
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 2.9e-251 872.1 697 60.8
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 3.8e-251 871.7 689 62.4
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 1.4e-250 869.8 697 60.8
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 1.4e-250 869.8 694 61.5
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 2.5e-250 869.0 694 62.1
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 3.2e-250 868.6 694 61.4
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 1.2e-249 866.7 701 60.9
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 1.2e-249 866.7 694 61.2
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 2.1e-249 865.9 694 61.8
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 2.1e-249 865.9 694 61.4
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 2.7e-249 865.5 697 60.8
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 3.6e-249 865.1 697 60.8
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 4.7e-249 864.8 694 61.7
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 7.9e-249 864.0 691 60.9
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 1.8e-248 862.8 694 61.2
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 1.8e-248 862.8 697 60.5
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 3.0e-248 862.1 695 61.2
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 3.9e-248 861.7 694 62.0
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 3.9e-248 861.7 697 61.0
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 3.9e-248 861.7 695 60.4
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 5.1e-248 861.3 699 60.4
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 5.1e-248 861.3 694 60.8
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 6.7e-248 860.9 697 60.4
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 8.8e-248 860.5 697 60.4
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 1.1e-247 860.1 697 59.8
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 2.0e-247 859.4 698 60.5
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 2.0e-247 859.4 700 59.9
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 2.6e-247 859.0 694 60.7
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 2.6e-247 859.0 697 60.5
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 3.3e-247 858.6 691 61.2
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 3.3e-247 858.6 697 60.5
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 3.3e-247 858.6 694 60.4
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 3.3e-247 858.6 695 61.2
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 4.4e-247 858.2 694 60.1
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 4.4e-247 858.2 697 60.8
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 5.7e-247 857.8 697 60.8
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.7e-247 857.8 697 60.7
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 7.4e-247 857.4 695 60.7
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 9.7e-247 857.1 691 60.9
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 9.7e-247 857.1 697 60.3
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 1.3e-246 856.7 697 59.7
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 1.7e-246 856.3 697 59.7
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 2.2e-246 855.9 697 60.1
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 2.2e-246 855.9 697 59.7
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 2.8e-246 855.5 698 60.5
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.8e-246 855.5 697 59.5
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 2.8e-246 855.5 697 59.5
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 2.8e-246 855.5 697 60.7
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 2.8e-246 855.5 691 59.9
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 3.7e-246 855.1 697 60.4
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 3.7e-246 855.1 698 59.3
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 3.7e-246 855.1 697 59.5
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 4.8e-246 854.7 697 60.4
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 4.8e-246 854.7 697 60.0
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 4.8e-246 854.7 694 60.7
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 6.3e-246 854.4 697 60.1
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 6.3e-246 854.4 697 60.0
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 6.3e-246 854.4 691 60.5
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 8.2e-246 854.0 697 60.0
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 8.2e-246 854.0 697 60.3
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 1.4e-245 853.2 694 59.8
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 1.8e-245 852.8 703 60.2
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 2.4e-245 852.4 697 60.1
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.4e-245 852.4 699 60.7
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 2.4e-245 852.4 697 60.1
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 3.1e-245 852.0 700 60.4
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 7.0e-245 850.9 700 60.3
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 7.0e-245 850.9 709 59.0
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 1.2e-244 850.1 700 60.0
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 1.2e-244 850.1 697 60.1
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 1.6e-244 849.7 698 60.0
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 2.0e-244 849.4 699 59.5
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 3.5e-244 848.6 740 57.3
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 4.5e-244 848.2 700 59.4
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 4.5e-244 848.2 698 60.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 4.5e-244 848.2 698 59.7
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-244 847.8 700 60.1
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 5.9e-244 847.8 700 59.9
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 5.9e-244 847.8 700 59.4
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 7.7e-244 847.4 700 59.4
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 1.7e-243 846.3 700 59.4
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 2.2e-243 845.9 700 59.3
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 3.8e-243 845.1 698 59.7
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 3.8e-243 845.1 696 59.5
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 6.5e-243 844.3 700 59.3
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 1.5e-242 843.2 698 59.0
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 3.2e-242 842.0 715 58.7
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 4.2e-242 841.6 691 59.9
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 5.5e-242 841.3 697 59.0
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 9.4e-242 840.5 739 57.0
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 8.0e-241 837.4 700 58.3
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 2.6e-239 832.4 694 58.9
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 4.4e-239 831.6 693 57.3
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 7.5e-239 830.9 632 63.9
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 3.7e-238 828.6 714 59.0
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 3.7e-238 828.6 691 58.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 3.5e-236 822.0 744 55.4
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 3.5e-236 822.0 744 55.4
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 5.9e-236 821.2 712 58.1
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 1.3e-235 820.1 661 62.2
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 1.7e-235 819.7 712 58.0
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 2.9e-235 818.9 702 57.5
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 3.8e-235 818.5 711 57.8
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 6.1e-233 811.2 691 59.0
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 4.0e-232 808.5 664 59.5
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 2.0e-231 806.2 694 59.1
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 1.3e-230 803.5 611 63.8
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 8.3e-230 800.8 756 54.2
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 1.1e-229 800.4 694 57.5
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 1.8e-229 799.7 705 56.0
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 2.4e-229 799.3 796 52.0
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 4.2e-226 788.5 697 56.5
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 5.2e-224 781.6 699 56.1
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 2.6e-223 779.2 697 55.2
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 1.4e-221 773.5 632 60.0
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 4.7e-217 758.4 786 51.4
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 4.1e-213 745.3 621 59.1
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 9.2e-213 744.2 617 58.7
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 6.8e-208 728.0 698 52.9
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 2.3e-203 713.0 585 59.8
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 3.7e-198 695.7 715 53.1
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 9.5e-194 681.0 697 50.6
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 8.1e-193 677.9 702 50.1
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.3e-192 676.4 707 51.1
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 7.1e-189 664.8 529 62.9
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 5.6e-170 602.1 471 63.7
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 1.5e-143 514.2 503 51.9
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 1.1e-130 471.5 419 54.7
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 6.7e-123 445.7 423 53.0
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 1.0e-107 395.2 366 53.0
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 3.1e-104 383.6 300 63.7
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.2e-103 381.7 314 58.9
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 5.2e-99 366.3 279 65.2
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 4.4e-98 363.2 304 59.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.0e-94 349.7 310 56.5
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 3.9e-86 323.6 353 53.8
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 3.9e-86 323.6 283 57.6
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.2e-71 275.4 312 48.7
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 9.3e-64 249.2 218 55.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 3.6e-60 237.3 392 41.3
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 3.5e-55 220.7 180 54.4
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 4.0e-51 207.2 206 51.9
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 4.2e-48 197.2 219 47.9
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 2.3e-46 191.4 168 52.4
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 2.5e-45 188.0 186 52.7
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 2.5e-40 171.4 349 36.4
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 3.2e-40 171.0 172 54.1
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 5.3e-27 127.1 171 43.9
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 5.0e-25 120.6 98 54.1
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 8.5e-25 119.8 101 51.5
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 1.5e-21 109.0 167 41.9
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 4.5e-18 97.4 60 66.7
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 2.9e-17 94.7 77 54.5
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 9.4e-16 89.7 112 44.6
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.0e-14 86.3 60 70.0
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 3.3e-13 81.3 151 33.8
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 3.3e-13 81.3 108 42.6
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 8.2e-12 76.6 151 32.5
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 1.4e-11 75.9 109 41.3
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 3.1e-11 74.7 158 36.7
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 2.0e-10 72.0 49 65.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 3.5e-10 71.2 113 38.1
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 8.5e-09 66.6 50 68.0
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 4.2e-08 64.3 125 34.4
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 1.8e-06 58.9 44 75.0


User provided reference genes

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